jgi.p|Nanoce1779_2|585179, mRNA_3277 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585179
Unique NamemRNA_3277
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1472
Alignment locationscaffold_7:1091126..1092723 -

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Properties
Property NameValue
TranscriptId585265
TrackFilteredModels2
ProteinId585179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1091126..1092723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585179gene_3277Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585179mRNA_3277-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3277CDS_3277Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3277 ID=mRNA_3277|Name=jgi.p|Nanoce1779_2|585179|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
CGCCAATCAGCGGAGAGAGCCTCTTTTCTTCAAGGCCAACTCTGACACCC
ATACCCACGCCCCATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGA
AACGAGCAAGTATATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCT
TGTCCCGCAAGGCGTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTG
CAGAACGCCGCCTTTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTA
TCACTAGCCGCCATCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATG
GGTTTTATTGGTTTGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCT
TTCCAAGACTGACCTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCA
TGGCTATTCTCCAAGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAA
ATCGCGCAGACAACTCAAATTATCATGACTATGCTCCCGGCCACGCAGCA
CGTGGAAGCCGTGGTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGA
CACTCCTAATTGATGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTA
GCCGCTCAAGCCCTTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAG
TGGTGGTATAGGGGGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAG
GAGAGGCGAAGAGCGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATG
GGCAAGAAGGTCGTCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAA
AATATGCAACAACTTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAG
CTATGCGTCTGGGCGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGG
GTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCACGGAACTTTACAACCC
CTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAAATGACTACCAAGGGG
GATTCACCTCTAGGTTAATGCAGAAAGATTTAGGAATTGCGGGGGATGTA
GCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGGAGCGGTGGCGCAGCA
GGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCGGGAAGGACTTTTCAA
GCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAAGGGAAAAGGAAGGGG
TAGGTGGGAGTAGGGGAGAGAGGATATTAGTAGGTAGCAGAGTAATGGAA
GAAGAACAAAGAGTGGCTCTCGCGAATAAAGAGAGGGAGGGAGTAGGAGA
GCGGCAACGGTGGAGCTTCTGTGTAATAGTCAGACTACAGTTAAATACCA
ATCTGTGAGTGCAAAATGAACACATGTCAAGCCAGTAGGGCAGCAGCAGG
GAAACAAATGTGGACCCGTTCCTTTATGCCAGGGAATGACGATAGAAGAA
AGCAGATTTTCAACAAAGGGAA
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protein sequence of jgi.p|Nanoce1779_2|585179

>mRNA_3277-protein ID=mRNA_3277-protein|Name=jgi.p|Nanoce1779_2|585179|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MNCWPCPARRLLYRDMTSSFLCRTPPFLRDRTPDPLVIITSRHQSTSNSS
SPIKMGFIGLGQMGSRMASNLLSKTDLPVVIYDTNPKAMAILQGKGARLA
SSVEEIAQTTQIIMTMLPATQHVEAVVGQVLIPHAKAGTLLIDGSTIDPT
ASKALAAQALTRGLEMVDAPVSGGIGGAEAGTLTFMVGGEAKSVEKAEAF
ILKHMGKKVVHCGGPGTGAVAKICNNLVLGVNMIGVAEAMRLGVALGMDP
LILNGVLNSSSGRSWVTELYNPCPGVIPSAPSSNDYQGGFTSRLMQKDLG
IAGDVANKVGGVPLPLGAVAQQVYALMQVAGWGGKDFSSVYKFLEGASIE
GKRKG*
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mRNA from alignment at scaffold_7:1091126..1092723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3277 ID=mRNA_3277|Name=jgi.p|Nanoce1779_2|585179|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_7:1091126..1092723- (Nannochloropsis oceanica)
CGCCAATCAGCGGAGAGAGCCTCTTTTCTTCAAGGCCAACTCTGACACCC
ATACCCACGCCCCATACAGTACAGGAAATTCTGCGTGCACCACCAAAGGA
AACGAGCAAGTATATACTCAAGTGAAAGCTTGATCATGAATTGCTGGCCT
TGTCCCGCAAGGCGTCTCCTATATCGCGACATGACCTCCTCCTTTCTCTG
CAGAACGCCGCCTTTTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTA
TCACTAGCCGCCATCAGAGCACCTCAAACTCTTCATCGCCGATTAAAATG
GGTTTTATTGGTTTGGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCT
TTCCAAGACTGACCTCCCAGTCGTCATCTATGACACCAACCCGAAGGCCA
TGGCTATTCTCCAAGGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAA
ATCGCGCAGACAACTCAAATTATCATGACTATGCTCCCGGCCACGCAGCA
CGTGGAAGCCGTGGTGGGACAGGTACTCATCCCACACGCCAAGGCAGGGA
CACTCCTAATTGATGGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTA
GCCGCTCAAGCCCTTACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAG
TGGTGGTATAGGGGGAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAG
GAGAGGCGAAGAGCGTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATG
GGCAAGAAGGTCGTCCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAA
AATATGCAACAACTTAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAG
CTATGCGTCTGGGCGTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGG
GTGCGTTACTCAATCCCTCTCCCTGAATTCCTCCTCCCCTCCCTGCCGTG
TCCTCTGCCAGACCCATTACCCACCCATACATAAATTCACCCCGGCCAAC
TCTCCCTTGTTCCCTCCCTCTCTCAGGTCCTCAACTCCTCCAGCGGCCGC
TCCTGGGTCACGGAACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGC
CCCTTCCTCAAATGACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGA
AAGATTTAGGAATTGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCC
TTGCCCTTGGGAGCGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGC
TGGGTGGGGCGGGAAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGG
CTTCAATTGAAGGGAAAAGGAAGGGGTAGGTGGGAGTAGGGGAGAGAGGA
TATTAGTAGGTAGCAGAGTAATGGAAGAAGAACAAAGAGTGGCTCTCGCG
AATAAAGAGAGGGAGGGAGTAGGAGAGCGGCAACGGTGGAGCTTCTGTGT
AATAGTCAGACTACAGTTAAATACCAATCTGTGAGTGCAAAATGAACACA
TGTCAAGCCAGTAGGGCAGCAGCAGGGAAACAAATGTGGACCCGTTCCTT
TATGCCAGGGAATGACGATAGAAGAAAGCAGATTTTCAACAAAGGGAA
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Coding sequence (CDS) from alignment at scaffold_7:1091126..1092723-

>mRNA_3277 ID=mRNA_3277|Name=jgi.p|Nanoce1779_2|585179|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_7:1091126..1092723- (Nannochloropsis oceanica)
GTCCTCAACTCCTCCAGCGGCCGCTCCTGGGTCACGGAACTTTACAACCC
CTGCCCGGGCGTTATTCCGTCCGCCCCTTCCTCAAATGACTACCAAGGGG
GATTCACCTCTAGGTTAATGCAGAAAGATTTAGGAATTGCGGGGGATGTA
GCAAACAAAGTGGGAGGGGTCCCCTTGCCCTTGGGAGCGGTGGCGCAGCA
GGTATATGCGCTGATGCAGGTCGCTGGGTGGGGCGGGAAGGACTTTTCAA
GCGTGTATAAGTTTCTGGAGGGGGCTTCAATTGAAGGGAAAAGGAAGGGG
TAGATGAATTGCTGGCCTTGTCCCGCAAGGCGTCTCCTATATCGCGACAT
GACCTCCTCCTTTCTCTGCAGAACGCCGCCTTTTTTGAGGGACCGCACTC
CCGATCCCCTTGTCATTATCACTAGCCGCCATCAGAGCACCTCAAACTCT
TCATCGCCGATTAAAATGGGTTTTATTGGTTTGGGACAAATGGGGTCGCG
CATGGCGAGCAATTTGCTTTCCAAGACTGACCTCCCAGTCGTCATCTATG
ACACCAACCCGAAGGCCATGGCTATTCTCCAAGGAAAAGGCGCCCGCCTT
GCCAGCTCCGTCGAGGAAATCGCGCAGACAACTCAAATTATCATGACTAT
GCTCCCGGCCACGCAGCACGTGGAAGCCGTGGTGGGACAGGTACTCATCC
CACACGCCAAGGCAGGGACACTCCTAATTGATGGTAGCACCATTGACCCC
ACGGCAAGCAAGGCCTTAGCCGCTCAAGCCCTTACTCGAGGCCTCGAAAT
GGTTGATGCCCCCGTGAGTGGTGGTATAGGGGGAGCAGAGGCCGGGACGC
TGACTTTCATGGTGGGAGGAGAGGCGAAGAGCGTCGAGAAAGCCGAGGCG
TTTATATTGAAGCACATGGGCAAGAAGGTCGTCCATTGCGGCGGGCCTGG
CACGGGGGCCGTTGCCAAAATATGCAACAACTTAGTGCTGGGAGTGAATA
TGATTGGCGTCGCGGAAGCTATGCGTCTGGGCGTGGCCTTGGGGATGGAC
CCCCTGATCTTAAACGGGGTCCTCAACTCCTCCAGCGGCCGCTCCTGGGT
CACGGAACTTTACAACCCCTGCCCGGGCGTTATTCCGTCCGCCCCTTCCT
CAAATGACTACCAAGGGGGATTCACCTCTAGGTTAATGCAGAAAGATTTA
GGAATTGCGGGGGATGTAGCAAACAAAGTGGGAGGGGTCCCCTTGCCCTT
GGGAGCGGTGGCGCAGCAGGTATATGCGCTGATGCAGGTCGCTGGGTGGG
GCGGGAAGGACTTTTCAAGCGTGTATAAGTTTCTGGAGGGGGCTTCAATT
GAAGGGAAAAGGAAGGGGTAGATGAATTGCTGGCCTTGTCCCGCAAGGCG
TCTCCTATATCGCGACATGACCTCCTCCTTTCTCTGCAGAACGCCGCCTT
TTTTGAGGGACCGCACTCCCGATCCCCTTGTCATTATCACTAGCCGCCAT
CAGAGCACCTCAAACTCTTCATCGCCGATTAAAATGGGTTTTATTGGTTT
GGGACAAATGGGGTCGCGCATGGCGAGCAATTTGCTTTCCAAGACTGACC
TCCCAGTCGTCATCTATGACACCAACCCGAAGGCCATGGCTATTCTCCAA
GGAAAAGGCGCCCGCCTTGCCAGCTCCGTCGAGGAAATCGCGCAGACAAC
TCAAATTATCATGACTATGCTCCCGGCCACGCAGCACGTGGAAGCCGTGG
TGGGACAGGTACTCATCCCACACGCCAAGGCAGGGACACTCCTAATTGAT
GGTAGCACCATTGACCCCACGGCAAGCAAGGCCTTAGCCGCTCAAGCCCT
TACTCGAGGCCTCGAAATGGTTGATGCCCCCGTGAGTGGTGGTATAGGGG
GAGCAGAGGCCGGGACGCTGACTTTCATGGTGGGAGGAGAGGCGAAGAGC
GTCGAGAAAGCCGAGGCGTTTATATTGAAGCACATGGGCAAGAAGGTCGT
CCATTGCGGCGGGCCTGGCACGGGGGCCGTTGCCAAAATATGCAACAACT
TAGTGCTGGGAGTGAATATGATTGGCGTCGCGGAAGCTATGCGTCTGGGC
GTGGCCTTGGGGATGGACCCCCTGATCTTAAACGGG
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Synonyms
Publications