jgi.p|Nanoce1779_2|565034, mRNA_3276 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|565034
Unique Name	mRNA_3276
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1548
Alignment location	scaffold_7:1088010..1089842 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	565120
Track	FilteredModels2
ProteinId	565034

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1088010..1089842 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565034	gene_3276	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|565034	mRNA_3276-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3276	CDS_3276	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1088010..1089842+
coding sequence from alignment at scaffold_7:1088010..1089842+

mRNA sequence

>mRNA_3276 ID=mRNA_3276|Name=jgi.p|Nanoce1779_2|565034|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ATGCTGGCGAAGAATAAACGGACGGCGAGGACCGTATGGTATAAGACCTA
CGAGCAGGGGGGGTTGGTGTATATCTTCCCCGATGCCATGAGGGCAGGGG
CGATCGAGCAGCACGTGAAGCCTTTCCTCATACCCGAAGCAGAGGATCCG
TCGTTTCGGGTGGTGGAAGGCGTGTGTGAGATCAAGGCGAGCGCGAATTT
GGTGGTTGAGAACTTGCTTGATATGCTTCACATTTCTTACGTACACTCGT
TTGGTAACATGCAGGAACCGCTGCCATTTGAGGAGAATTATGAATACTTT
TTTGACGACGAGGCGTCCCAATTGCTGCCATACGCGAGGACGACCTTCAA
ATACCGGGCAGGGCCAACGAGCATCAGTAAAGTGGTGGGGAAAATTCAGG
AGGTGGTGGTGGAGAATGAGTTCCACTTGCCCTACACCACCGTGACGCGC
GTCAAGTTCGGCCAGGACGTCAAGACGATCTACGTGGTGGCTGTGCCTGT
TGAGGACGGGTTGACGGTAGTCCACTACAAGCTGTATCGAAATTTCATGT
ATGTTCACCCAAGGGACGAGTCAATTGTGAATAAAGGCCTGGATCAGTTT
TTCCAGTCTGTCATGCGCTTGACCCTGAATGAGGATAAGGATATATTGGA
GTCGTTGTACCAGGAGCACCAGGAGGGTTATGTCCTGAGTAGATATGATA
AGCCCTTGAAGATTTTTAGGAAGACGATGAAGGAGTTTATGGAGGCGAGC
AGGGCGAGGGAGGGTATGGCGGAAAGGCGGGCATTGGAGATGGAGTTGTT
AAGATTGATAGAACGGACGGAGAGGGGGAGGAGGGCCACCCGGGGTCAGC
ATGCAACGATTTTGTCGATTGTCAAGGGGTTGGAGAAGGGCTTTGCACGC
CAGTTTGAGAGGGAGGAAGGGAACATGGGCGAGGTCGTGATTGAGGACAG
TGCTGTAAACGGGACCTGGCATCTGGTCTATGCGAATCCGGGTGACCTGT
CTGCCCTTCCTCCCGCCTCCGAGGAGGAGGAAATGGGGAGGCAGCAATGG
CAGAAGGGCAGGAAGAGGGTGTTGCGGCCGGAACGCCTGCGCTCAGCGGG
TGGAGAGAGATATTTGCTTGACTTTACCCCGAGTAAAGGCCGGCCATTGT
GGGCGGATACGGACGAAAGCACGCAAACGATCGACACGGCTAACAATTTA
TTGAGCAATACGGCGGTTTACCAAGGGCTGCTGGGTATCACGACGAAGGT
GGAATTGAACGGCGTGTTGTCCACACCGGGAATAGGAAAGGGAGGGAGGG
AGGGGAAGGAGAGAGATGGGGCAGGAAAAGGGCATAGACAGGATGTACAG
TTTACGTCGGCGAAGGTGGATGTCGGGGGTTTTCAGGTGATGTTCCCTCA
TATGGACGTATTTGGGATAAGTGGTTGGTTGGACACAACATTTGTGGATG
AGCATATAAGGATTTGTCGGGGAAATCGCGGATCAGTTTTCGTGTTGACG
CGTCGGCCGTTGGTTGCTCCAGGCAAGGTGGGAAAGGAGGAGATTTAG

protein sequence of jgi.p|Nanoce1779_2|565034

>mRNA_3276-protein ID=mRNA_3276-protein|Name=jgi.p|Nanoce1779_2|565034|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MLAKNKRTARTVWYKTYEQGGLVYIFPDAMRAGAIEQHVKPFLIPEAEDP
SFRVVEGVCEIKASANLVVENLLDMLHISYVHSFGNMQEPLPFEENYEYF
FDDEASQLLPYARTTFKYRAGPTSISKVVGKIQEVVVENEFHLPYTTVTR
VKFGQDVKTIYVVAVPVEDGLTVVHYKLYRNFMYVHPRDESIVNKGLDQF
FQSVMRLTLNEDKDILESLYQEHQEGYVLSRYDKPLKIFRKTMKEFMEAS
RAREGMAERRALEMELLRLIERTERGRRATRGQHATILSIVKGLEKGFAR
QFEREEGNMGEVVIEDSAVNGTWHLVYANPGDLSALPPASEEEEMGRQQW
QKGRKRVLRPERLRSAGGERYLLDFTPSKGRPLWADTDESTQTIDTANNL
LSNTAVYQGLLGITTKVELNGVLSTPGIGKGGREGKERDGAGKGHRQDVQ
FTSAKVDVGGFQVMFPHMDVFGISGWLDTTFVDEHIRICRGNRGSVFVLT
RRPLVAPGKVGKEEI*

mRNA from alignment at scaffold_7:1088010..1089842+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3276 ID=mRNA_3276|Name=jgi.p|Nanoce1779_2|565034|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at scaffold_7:1088010..1089842+ (Nannochloropsis oceanica)
ATGCTGGCGAAGAATAAACGGACGGCGAGGACCGTATGGTATAAGACCTA
CGAGCAGGGGGGGTTGGTGTATATCTTCCCCGATGCCATGAGGGCAGGGG
CGATCGAGCAGCACGTGAAGCCTTTCCTCATACCCGAAGCAGAGGATCCG
TCGTTTCGGGTGGTGGAAGGCGTGTGTGAGATCAAGGCGAGCGCGAATTT
GGTGGTTGAGAACTTGCTTGATATGCTTCACATTTCTTACGTACACTCGT
TTGGTAACATGCAGGAACCGCTGCCATTTGAGGAGAATTATGAATACTTT
TTTGACGACGAGGCGTCCCAATTGCTGCCATACGCGAGGACGACCTTCAA
ATACCGGGCAGGGCCAACGAGCATCAGTAAAGTGGTGGGGAAAATTCAGG
AGGTGGTGGTGGAGAATGAGTTCCACTTGCCCTACACCACCGTGACGCGC
GTCAAGTTCGGCCAGGACGTCAAGACGATCTACGTGGTGGCTGTGCCTGT
TGAGGACGGGTTGACGGTAGTCCACTACAAGCTGTATCGAAATTTCATGT
ATGTTCACCCAAGGGACGAGTCAATTGTGAATAAAGGCCTGGATCAGTTT
TTCCAGTCTGTCATGCGCTTGACCCTGAATGAGGATAAGGATATATTGGA
GTCGTTGTACCAGGAGCACCAGGAGGGTTATGTCCTGAGTAGATATGATA
AGCCCTTGAAGATTTTTAGGAAGACGATGAAGGAGTTTATGGAGGCGAGC
AGGGCGAGGGAGGGTATGGCGGAAAGGCGGGCATTGGAGATGGAGTTGTT
AAGATTGATAGAACGGACGGAGAGGGGGAGGAGGGCCACCCGGGGTCAGC
ATGCAACGATTTTGTCGATTGTCAAGGGGTTGGAGAAGGGCTTTGCACGC
CAGTTTGAGAGGGAGGAAGGGAACATGGGCGAGGTCGTGATTGAGGACAG
TGCTGTAAACGGGACCTGGCATCTGGTCTATGCGAATCCGGGTGACCTGT
CTGCCCTTCCTCCCGCCTCCGAGGAGGAGGAAATGGGGAGGCAGCAATGG
CAGAAGGGCAGGAAGAGGGTGTTGCGGCCGGTGCCGGATGCCACGGCTGC
AGCTGCTGCTAGTGCTCGACGCCTTATGACCCCCGCGCAGCAACAGGCAG
CCTCCCGGCAACAGCGCAAGCAGCAGCAGCAGCAGCAGCAGGTAGAGGAA
GATGGATCTACCTCTCCTCCTTATTCGTCTCATCACTTTCCTTCTCCTCC
ATCTCCTACCCCTGTCCCTGTTTCTACTGCTACAACTGCTGCTGCTGCTC
CTCGCTCTCCGCGTGAGGCTGAAGATGTCTTGTTATATTCCGAAGAGGGA
TCTGCGCGGTTGCAGGAACGCCTGCGCTCAGCGGGTGGAGAGAGATATTT
GCTTGACTTTACCCCGAGTAAAGGCCGGCCATTGTGGGCGGATACGGACG
AAAGCACGCAAACGATCGACACGGCTAACAATTTATTGAGCAATACGGCG
GTTTACCAAGGGCTGCTGGGTATCACGACGAAGGTGGAATTGAACGGCGT
GTTGTCCACACCGGGAATAGGAAAGGGAGGGAGGGAGGGGAAGGAGAGAG
ATGGGGCAGGAAAAGGGCATAGACAGGATGTACAGTTTACGTCGGCGAAG
GTGGATGTCGGGGGTTTTCAGGTGATGTTCCCTCATATGGACGTATTTGG
GATAAGTGGTTGGTTGGACACAACATTTGTGGATGAGCATATAAGGATTT
GTCGGGGAAATCGCGGATCAGTTTTCGTGTTGACGCGTCGGCCGTTGGTT
GCTCCAGGCAAGGTGGGAAAGGAGGAGATTTAG

Coding sequence (CDS) from alignment at scaffold_7:1088010..1089842+

>mRNA_3276 ID=mRNA_3276|Name=jgi.p|Nanoce1779_2|565034|organism=Nannochloropsis oceanica|type=CDS|length=3096bp|location=Sequence derived from alignment at scaffold_7:1088010..1089842+ (Nannochloropsis oceanica)
ATGCTGGCGAAGAATAAACGGACGGCGAGGACCGTATGGTATAAGACCTA
CGAGCAGGGGGGGTTGGTGTATATCTTCCCCGATGCCATGAGGGCAGGGG
CGATCGAGCAGCACGTGAAGCCTTTCCTCATACCCGAAGCAGAGGATCCG
TCGTTTCGGGTGGTGGAAGGCGTGTGTGAGATCAAGGCGAGCGCGAATTT
GGTGGTTGAGAACTTGCTTGATATGCTTCACATTTCTTACGTACACTCGT
TTGGTAACATGCAGGAACCGCTGCCATTTGAGGAGAATTATGAATACTTT
TTTGACGACGAGGCGTCCCAATTGCTGCCATACGCGAGGACGACCTTCAA
ATACCGGGCAGGGCCAACGAGCATCAGTAAAGTGGTGGGGAAAATTCAGG
AGGTGGTGGTGGAGAATGAGTTCCACTTGCCCTACACCACCGTGACGCGC
GTCAAGTTCGGCCAGGACGTCAAGACGATCTACGTGGTGGCTGTGCCTGT
TGAGGACGGGTTGACGGTAGTCCACTACAAGCTGTATCGAAATTTCATGT
ATGTTCACCCAAGGGACGAGTCAATTGTGAATAAAGGCCTGGATCAGTTT
TTCCAGTCTGTCATGCGCTTGACCCTGAATGAGGATAAGGATATATTGGA
GTCGTTGTACCAGGAGCACCAGGAGGGTTATGTCCTGAGTAGATATGATA
AGCCCTTGAAGATTTTTAGGAAGACGATGAAGGAGTTTATGGAGGCGAGC
AGGGCGAGGGAGGGTATGGCGGAAAGGCGGGCATTGGAGATGGAGTTGTT
AAGATTGATAGAACGGACGGAGAGGGGGAGGAGGGCCACCCGGGGTCAGC
ATGCAACGATTTTGTCGATTGTCAAGGGGTTGGAGAAGGGCTTTGCACGC
CAGTTTGAGAGGGAGGAAGGGAACATGGGCGAGGTCGTGATTGAGGACAG
TGCTGTAAACGGGACCTGGCATCTGGTCTATGCGAATCCGGGTGACCTGT
CTGCCCTTCCTCCCGCCTCCGAGGAGGAGGAAATGGGGAGGCAGCAATGG
CAGAAGGGCAGGAAGAGGGTGTTGCGGCCGGAACGCCTGCGCTCAGCGGG
TGGAGAGAGATATTTGCTTGACTTTACCCCGAGTAAAGGCCGGCCATTGT
GGGCGGATACGGACGAAAGCACGCAAACGATCGACACGGCTAACAATTTA
TTGAGCAATACGGCGGTTTACCAAGGGCTGCTGGGTATCACGACGAAGGT
GGAATTGAACGGCGTGTTGTCCACACCGGGAATAGGAAAGGGAGGGAGGG
AGGGGAAGGAGAGAGATGGGGCAGGAAAAGGGCATAGACAGGATGTACAG
TTTACGTCGGCGAAGGTGGATGTCGGGGGTTTTCAGGTGATGTTCCCTCA
TATGGACGTATTTGGGATAAGTGGTTGGTTGGACACAACATTTGTGGATG
AGCATATAAGGATTTGTCGGGGAAATCGCGGATCAGTTTTCGTGTTGACG
CGTCGGCCGTTGGTTGCTCCAGGCAAGGTGGGAAAGGAGGAGATTTAGAT
GCTGGCGAAGAATAAACGGACGGCGAGGACCGTATGGTATAAGACCTACG
AGCAGGGGGGGTTGGTGTATATCTTCCCCGATGCCATGAGGGCAGGGGCG
ATCGAGCAGCACGTGAAGCCTTTCCTCATACCCGAAGCAGAGGATCCGTC
GTTTCGGGTGGTGGAAGGCGTGTGTGAGATCAAGGCGAGCGCGAATTTGG
TGGTTGAGAACTTGCTTGATATGCTTCACATTTCTTACGTACACTCGTTT
GGTAACATGCAGGAACCGCTGCCATTTGAGGAGAATTATGAATACTTTTT
TGACGACGAGGCGTCCCAATTGCTGCCATACGCGAGGACGACCTTCAAAT
ACCGGGCAGGGCCAACGAGCATCAGTAAAGTGGTGGGGAAAATTCAGGAG
GTGGTGGTGGAGAATGAGTTCCACTTGCCCTACACCACCGTGACGCGCGT
CAAGTTCGGCCAGGACGTCAAGACGATCTACGTGGTGGCTGTGCCTGTTG
AGGACGGGTTGACGGTAGTCCACTACAAGCTGTATCGAAATTTCATGTAT
GTTCACCCAAGGGACGAGTCAATTGTGAATAAAGGCCTGGATCAGTTTTT
CCAGTCTGTCATGCGCTTGACCCTGAATGAGGATAAGGATATATTGGAGT
CGTTGTACCAGGAGCACCAGGAGGGTTATGTCCTGAGTAGATATGATAAG
CCCTTGAAGATTTTTAGGAAGACGATGAAGGAGTTTATGGAGGCGAGCAG
GGCGAGGGAGGGTATGGCGGAAAGGCGGGCATTGGAGATGGAGTTGTTAA
GATTGATAGAACGGACGGAGAGGGGGAGGAGGGCCACCCGGGGTCAGCAT
GCAACGATTTTGTCGATTGTCAAGGGGTTGGAGAAGGGCTTTGCACGCCA
GTTTGAGAGGGAGGAAGGGAACATGGGCGAGGTCGTGATTGAGGACAGTG
CTGTAAACGGGACCTGGCATCTGGTCTATGCGAATCCGGGTGACCTGTCT
GCCCTTCCTCCCGCCTCCGAGGAGGAGGAAATGGGGAGGCAGCAATGGCA
GAAGGGCAGGAAGAGGGTGTTGCGGCCGGAACGCCTGCGCTCAGCGGGTG
GAGAGAGATATTTGCTTGACTTTACCCCGAGTAAAGGCCGGCCATTGTGG
GCGGATACGGACGAAAGCACGCAAACGATCGACACGGCTAACAATTTATT
GAGCAATACGGCGGTTTACCAAGGGCTGCTGGGTATCACGACGAAGGTGG
AATTGAACGGCGTGTTGTCCACACCGGGAATAGGAAAGGGAGGGAGGGAG
GGGAAGGAGAGAGATGGGGCAGGAAAAGGGCATAGACAGGATGTACAGTT
TACGTCGGCGAAGGTGGATGTCGGGGGTTTTCAGGTGATGTTCCCTCATA
TGGACGTATTTGGGATAAGTGGTTGGTTGGACACAACATTTGTGGATGAG
CATATAAGGATTTGTCGGGGAAATCGCGGATCAGTTTTCGTGTTGACGCG
TCGGCCGTTGGTTGCTCCAGGCAAGGTGGGAAAGGAGGAGATTTAG

Synonyms

Publications