jgi.p|Nanoce1779_2|402322, mRNA_3273 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|402322
Unique Name	mRNA_3273
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2815
Alignment location	scaffold_7:1072564..1075378 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	402408
Track	FilteredModels2
ProteinId	402322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1072564..1075378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|402322	gene_3273	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|402322	mRNA_3273-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3273	CDS_3273	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1072564..1075378-
coding sequence from alignment at scaffold_7:1072564..1075378-

mRNA sequence

>mRNA_3273 ID=mRNA_3273|Name=jgi.p|Nanoce1779_2|402322|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp
TAAAAGGCTCGCAGTGGGCTCTCTTCATTGTCTTTCTTCCTCCAACTTCC
CCTCGCTCCTCACCAATATCTCCTATTATTACGACATTTCTTTCCTCCCT
TCATCCTCCTCTCACCTCTCCACGAAACCCTAACCCATCCAACTCCTCTT
CTCCCCTCAAAGTCCTTCATCAACGACCTAGCTTCCAAACTTCTTGGAGG
CCAGGCCATTCTGGGAACCGGCCACCATCATCACCGCAATCTCACCACGC
AAGTCCTCAGTCTGGAGGACCTAGTCCTCTTCAAAATACAAGAGTTCCGG
CTTCAATTCTTGGCAAAATGTCTACAAATTCACACCTTGTCGGGGAAGAA
TCATTTGGTGCTTTCCTTGACACATTTTGACCTGTTGACTGATGTCTTGC
GGGTTATTTTAAGGGAGGCGAATAACCAGGAGGACCACTTGAGTATTCGG
ATGGTGTACCTCGTGTCAGAATTAAGTGGGACTTACCTTGGACAAGGAGG
GCAGGGTGGGCATCTGTTTTTGCGAACACTTAAGATGGCATTGAGCAAGC
ATGAGGCGTGGCAGAATCTGGGATTTTATGAGCACGTGCTGGATGAGTGC
GTGGCGAGGGATAAACAGCATTGGATGCATCTTCAGGGCCCCTTGTCCGA
GATTCTTAGTTTTGAGATTCACAACGAGGAGATCATTGCATTGTTGCTTT
CGTTTCGATTCAAAGCCTTGCTGGGCGCGATTGAGCAGTTGAAGATGGGA
GAGGAGGGGGGGCAGGTTAAGGAGGGATTGATCGAGGGGCTATTAGATTA
TTGCCGACGAGTGCACGGAGTTGAGTTTGAGAGGGGGCAAGTCATGGGGC
CTCTGGAGACGCCGTTTATGCTCTGGTTGTTGGATGTGGCGGTGAGGGCG
TGGCAGTTGCCGAAGTTGGAAGAAGGAGGGGCAGGGGGGTTGGAGAAGGG
GGATGCGAGTCAGAGTCGTGGAAGTAGCTGTAGCGGGAGCAGGGGAGGAG
GGGTGGAAACGTACGTGCAGACGATGAGAAGGCGGTCCTCTTTATCGTCG
ATGGCGTGCTCAACCACGGCCAAGTCATCCGTGAGTAACATGTTACGATG
GGCCATCGAGGTGACGACACGAGCTGCACATGGGTCTAGCTTGGGGTTCT
CGATCCATCACGAACTCCTGCGCTTTGTCCTTGACCGACTAGCGGCCAAC
CCCCAGAAAATCAACCTGCTCTCGCAAAGTGCCTTCCCCTCCAGCGGTAA
CGACAATTGCAGGAGCAGCAGCAGTAATAATGGCAGTAGAAGTGATAGTG
GTTTGTGTTTGTGTGGTCGCTCACGTAGGGTTTGGCGGGTCTTGGGAGGG
TATGGAGAGCAGCTTGAGAACATACGGCGCTTTCTCCCCCTCCTGCTTTG
CGAGGGGTGCTTTCGTACGGTGTGCCACGATCGATCAATGGAGCTGTTAC
GGCTACAACAGACGGTTGGGATGGCTCCTTTGCCTGCATCGGAGATATGG
ACCCCGATGTCGATTTCCGAGTTTGTTTTTCCTCGGCCTTGTTCTTTTTC
AGTAGAGATGGGTCAGCGGCTGCCATCCCAATGTAGGGGAGAGAGAGAGA
CGGAGAAGGAGGAGGGGCTGCAAAGGAAGATATCGTTGTCCAGCAGTAGC
TGCCTTCGCAATAGTGGTAGTAGCAGCGGCAGTGGTAGCAGCGCGAGAGG
GTCTGGTGTGGAAGCTGCTGCTCCAGTCATGACTCCACGTATGCCCACCA
TTCACAGTATGAGAAGCAGCAAGTGCAGGCTTTCTTCTTCCTCCACTTCC
TCCACTTCCTCTTCTCCTCGGCAGACACGTCGACCTTCAGAGCAGCAACT
GGCGCCAGGCCGACGGAAGAGGAGCGAGGATGTTAGTTGCTCTTACTCCT
CGAAGCCCTCCTCTTTAGCAGCAACAACAGCAGCAACAGGAGCGGGCGCC
GATTCCAGCCCTCCTTACCACGCACAATCACGACGGTATCGCAGCAGTAG
CAGCGTGAGTAGCACCTCGTCCTCCTCCGCCTCCCCCCGTAACCCCGCCT
CCACCAGGATCGACAACAGCAACCATCACACTGTCCGTAGAGACCAAGAA
CGCGCCTGCTCCCGTATGTCCTTCTCTTCCTCCTCTTCCTCCTCCTCCCC
CTTCTCCTATCCATCCTCCACTTCCGTCTCCATGCCTCTCTCCCACCCTC
TTACCTCTTTGCAGAGCACCGCCCGAGCTAATCGCCGTTCATCTTCAGGG
CCAAGAGACGCCACGATGGTATCGGCGAGTCGACGACGAGAAGAGAGGGA
GAACATGCATTTGACGCTCTTGAGGGAGGAAGGAATGGAAGTACTGAAGC
ACGGTAGATTTGGATGTGTCATTCCTCACTATCGCTTTTTATTTGTGGAT
CGCGAGGAGCTTTATTGGTGTCGACGGGAGGAGGTGGGGAAGAGGAAGAG
GCAGCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGAGGAGGGGAAAGG
GGAGCTTGTTGTTGCGGAATCTGATGCAAGTGAAGCTGAAGAAGAGAGCG
AGGATTGTTTCTCTAGAGTTTAAGGAAAGGTCATTGGTCGTGGAGGCGTT
GGGGGGTGAAGAGTTTGATGTGCTTGCGGGAATTTTCACAAGGGTTATGA
GTGAGAATATGGGGGGAAACAGAGGGCCGGTTGTGATCACTCGCGGGAAG
AGGTATTAGGGAGGGAAGGAGGGGGTGGACAGAAGGAGGCAAGGAATAAA
GCGATGGTAAAAGGGTGGAAAGAAATGGATAAGTTTAAGGGTTTACATCG
TGGTGCGCGTGCGGC

protein sequence of jgi.p|Nanoce1779_2|402322

>mRNA_3273-protein ID=mRNA_3273-protein|Name=jgi.p|Nanoce1779_2|402322|organism=Nannochloropsis oceanica|type=polypeptide|length=753bp
MVYLVSELSGTYLGQGGQGGHLFLRTLKMALSKHEAWQNLGFYEHVLDEC
VARDKQHWMHLQGPLSEILSFEIHNEEIIALLLSFRFKALLGAIEQLKMG
EEGGQVKEGLIEGLLDYCRRVHGVEFERGQVMGPLETPFMLWLLDVAVRA
WQLPKLEEGGAGGLEKGDASQSRGSSCSGSRGGGVETYVQTMRRRSSLSS
MACSTTAKSSVSNMLRWAIEVTTRAAHGSSLGFSIHHELLRFVLDRLAAN
PQKINLLSQSAFPSSGNDNCRSSSSNNGSRSDSGLCLCGRSRRVWRVLGG
YGEQLENIRRFLPLLLCEGCFRTVCHDRSMELLRLQQTVGMAPLPASEIW
TPMSISEFVFPRPCSFSVEMGQRLPSQCRGERETEKEEGLQRKISLSSSS
CLRNSGSSSGSGSSARGSGVEAAAPVMTPRMPTIHSMRSSKCRLSSSSTS
STSSSPRQTRRPSEQQLAPGRRKRSEDVSCSYSSKPSSLAATTAATGAGA
DSSPPYHAQSRRYRSSSSVSSTSSSSASPRNPASTRIDNSNHHTVRRDQE
RACSRMSFSSSSSSSSPFSYPSSTSVSMPLSHPLTSLQSTARANRRSSSG
PRDATMVSASRRREERENMHLTLLREEGMEVLKHGRFGCVIPHYRFLFVD
REELYWCRREEVGKRKRQQQQQQQQQQQQRRGKGSLLLRNLMQVKLKKRA
RIVSLEFKERSLVVEALGGEEFDVLAGIFTRVMSENMGGNRGPVVITRGK
RY*

mRNA from alignment at scaffold_7:1072564..1075378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3273 ID=mRNA_3273|Name=jgi.p|Nanoce1779_2|402322|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp|location=Sequence derived from alignment at scaffold_7:1072564..1075378- (Nannochloropsis oceanica)
TAAAAGGCTCGCAGTGGGCTCTCTTCATTGTCTTTCTTCCTCCAACTTCC
CCTCGCTCCTCACCAATATCTCCTATTATTACGACATTTCTTTCCTCCCT
TCATCCTCCTCTCACCTCTCCACGAAACCCTAACCCATCCAACTCCTCTT
CTCCCCTCAAAGTCCTTCATCAACGACCTAGCTTCCAAACTTCTTGGAGG
CCAGGCCATTCTGGGAACCGGCCACCATCATCACCGCAATCTCACCACGC
AAGTCCTCAGTCTGGAGGACCTAGTCCTCTTCAAAATACAAGAGTTCCGG
CTTCAATTCTTGGCAAAATGTCTACAAATTCACACCTTGTCGGGGAAGAA
TCATTTGGTGCTTTCCTTGACACATTTTGACCTGTTGACTGATGTCTTGC
GGGTTATTTTAAGGGAGGCGAATAACCAGGAGGACCACTTGAGTATTCGG
ATGGTGTACCTCGTGTCAGAATTAAGTGGGACTTACCTTGGACAAGGAGG
GCAGGGTGGGCATCTGTTTTTGCGAACACTTAAGATGGCATTGAGCAAGC
ATGAGGCGTGGCAGAATCTGGGATTTTATGAGCACGTGCTGGATGAGTGC
GTGGCGAGGGATAAACAGCATTGGATGCATCTTCAGGGCCCCTTGTCCGA
GATTCTTAGTTTTGAGATTCACAACGAGGAGATCATTGCATTGTTGCTTT
CGTTTCGATTCAAAGCCTTGCTGGGCGCGATTGAGCAGTTGAAGATGGGA
GAGGAGGGGGGGCAGGTTAAGGAGGGATTGATCGAGGGGCTATTAGATTA
TTGCCGACGAGTGCACGGAGTTGAGTTTGAGAGGGGGCAAGTCATGGGGC
CTCTGGAGACGCCGTTTATGCTCTGGTTGTTGGATGTGGCGGTGAGGGCG
TGGCAGTTGCCGAAGTTGGAAGAAGGAGGGGCAGGGGGGTTGGAGAAGGG
GGATGCGAGTCAGAGTCGTGGAAGTAGCTGTAGCGGGAGCAGGGGAGGAG
GGGTGGAAACGTACGTGCAGACGATGAGAAGGCGGTCCTCTTTATCGTCG
ATGGCGTGCTCAACCACGGCCAAGTCATCCGTGAGTAACATGTTACGATG
GGCCATCGAGGTGACGACACGAGCTGCACATGGGTCTAGCTTGGGGTTCT
CGATCCATCACGAACTCCTGCGCTTTGTCCTTGACCGACTAGCGGCCAAC
CCCCAGAAAATCAACCTGCTCTCGCAAAGTGCCTTCCCCTCCAGCGGTAA
CGACAATTGCAGGAGCAGCAGCAGTAATAATGGCAGTAGAAGTGATAGTG
GTTTGTGTTTGTGTGGTCGCTCACGTAGGGTTTGGCGGGTCTTGGGAGGG
TATGGAGAGCAGCTTGAGAACATACGGCGCTTTCTCCCCCTCCTGCTTTG
CGAGGGGTGCTTTCGTACGGTGTGCCACGATCGATCAATGGAGCTGTTAC
GGCTACAACAGACGGTTGGGATGGCTCCTTTGCCTGCATCGGAGATATGG
ACCCCGATGTCGATTTCCGAGTTTGTTTTTCCTCGGCCTTGTTCTTTTTC
AGTAGAGATGGGTCAGCGGCTGCCATCCCAATGTAGGGGAGAGAGAGAGA
CGGAGAAGGAGGAGGGGCTGCAAAGGAAGATATCGTTGTCCAGCAGTAGC
TGCCTTCGCAATAGTGGTAGTAGCAGCGGCAGTGGTAGCAGCGCGAGAGG
GTCTGGTGTGGAAGCTGCTGCTCCAGTCATGACTCCACGTATGCCCACCA
TTCACAGTATGAGAAGCAGCAAGTGCAGGCTTTCTTCTTCCTCCACTTCC
TCCACTTCCTCTTCTCCTCGGCAGACACGTCGACCTTCAGAGCAGCAACT
GGCGCCAGGCCGACGGAAGAGGAGCGAGGATGTTAGTTGCTCTTACTCCT
CGAAGCCCTCCTCTTTAGCAGCAACAACAGCAGCAACAGGAGCGGGCGCC
GATTCCAGCCCTCCTTACCACGCACAATCACGACGGTATCGCAGCAGTAG
CAGCGTGAGTAGCACCTCGTCCTCCTCCGCCTCCCCCCGTAACCCCGCCT
CCACCAGGATCGACAACAGCAACCATCACACTGTCCGTAGAGACCAAGAA
CGCGCCTGCTCCCGTATGTCCTTCTCTTCCTCCTCTTCCTCCTCCTCCCC
CTTCTCCTATCCATCCTCCACTTCCGTCTCCATGCCTCTCTCCCACCCTC
TTACCTCTTTGCAGAGCACCGCCCGAGCTAATCGCCGTTCATCTTCAGGG
CCAAGAGACGCCACGATGGTATCGGCGAGTCGACGACGAGAAGAGAGGGA
GAACATGCATTTGACGCTCTTGAGGGAGGAAGGAATGGAAGTACTGAAGC
ACGGTAGATTTGGATGTGTCATTCCTCACTATCGCTTTTTATTTGTGGAT
CGCGAGGAGCTTTATTGGTGTCGACGGGAGGAGGTGGGGAAGAGGAAGAG
GCAGCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGAGGAGGGGAAAGG
GGAGCTTGTTGTTGCGGAATCTGATGCAAGTGAAGCTGAAGAAGAGAGCG
AGGATTGTTTCTCTAGAGTTTAAGGAAAGGTCATTGGTCGTGGAGGCGTT
GGGGGGTGAAGAGTTTGATGTGCTTGCGGGAATTTTCACAAGGGTTATGA
GTGAGAATATGGGGGGAAACAGAGGGCCGGTTGTGATCACTCGCGGGAAG
AGGTATTAGGGAGGGAAGGAGGGGGTGGACAGAAGGAGGCAAGGAATAAA
GCGATGGTAAAAGGGTGGAAAGAAATGGATAAGTTTAAGGGTTTACATCG
TGGTGCGCGTGCGGC

Coding sequence (CDS) from alignment at scaffold_7:1072564..1075378-

>mRNA_3273 ID=mRNA_3273|Name=jgi.p|Nanoce1779_2|402322|organism=Nannochloropsis oceanica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_7:1072564..1075378- (Nannochloropsis oceanica)
ATGGTGTACCTCGTGTCAGAATTAAGTGGGACTTACCTTGGACAAGGAGG
GCAGGGTGGGCATCTGTTTTTGCGAACACTTAAGATGGCATTGAGCAAGC
ATGAGGCGTGGCAGAATCTGGGATTTTATGAGCACGTGCTGGATGAGTGC
GTGGCGAGGGATAAACAGCATTGGATGCATCTTCAGGGCCCCTTGTCCGA
GATTCTTAGTTTTGAGATTCACAACGAGGAGATCATTGCATTGTTGCTTT
CGTTTCGATTCAAAGCCTTGCTGGGCGCGATTGAGCAGTTGAAGATGGGA
GAGGAGGGGGGGCAGGTTAAGGAGGGATTGATCGAGGGGCTATTAGATTA
TTGCCGACGAGTGCACGGAGTTGAGTTTGAGAGGGGGCAAGTCATGGGGC
CTCTGGAGACGCCGTTTATGCTCTGGTTGTTGGATGTGGCGGTGAGGGCG
TGGCAGTTGCCGAAGTTGGAAGAAGGAGGGGCAGGGGGGTTGGAGAAGGG
GGATGCGAGTCAGAGTCGTGGAAGTAGCTGTAGCGGGAGCAGGGGAGGAG
GGGTGGAAACGTACGTGCAGACGATGAGAAGGCGGTCCTCTTTATCGTCG
ATGGCGTGCTCAACCACGGCCAAGTCATCCGTGAGTAACATGTTACGATG
GGCCATCGAGGTGACGACACGAGCTGCACATGGGTCTAGCTTGGGGTTCT
CGATCCATCACGAACTCCTGCGCTTTGTCCTTGACCGACTAGCGGCCAAC
CCCCAGAAAATCAACCTGCTCTCGCAAAGTGCCTTCCCCTCCAGCGGTAA
CGACAATTGCAGGAGCAGCAGCAGTAATAATGGCAGTAGAAGTGATAGTG
GTTTGTGTTTGTGTGGTCGCTCACGTAGGGTTTGGCGGGTCTTGGGAGGG
TATGGAGAGCAGCTTGAGAACATACGGCGCTTTCTCCCCCTCCTGCTTTG
CGAGGGGTGCTTTCGTACGGTGTGCCACGATCGATCAATGGAGCTGTTAC
GGCTACAACAGACGGTTGGGATGGCTCCTTTGCCTGCATCGGAGATATGG
ACCCCGATGTCGATTTCCGAGTTTGTTTTTCCTCGGCCTTGTTCTTTTTC
AGTAGAGATGGGTCAGCGGCTGCCATCCCAATGTAGGGGAGAGAGAGAGA
CGGAGAAGGAGGAGGGGCTGCAAAGGAAGATATCGTTGTCCAGCAGTAGC
TGCCTTCGCAATAGTGGTAGTAGCAGCGGCAGTGGTAGCAGCGCGAGAGG
GTCTGGTGTGGAAGCTGCTGCTCCAGTCATGACTCCACGTATGCCCACCA
TTCACAGTATGAGAAGCAGCAAGTGCAGGCTTTCTTCTTCCTCCACTTCC
TCCACTTCCTCTTCTCCTCGGCAGACACGTCGACCTTCAGAGCAGCAACT
GGCGCCAGGCCGACGGAAGAGGAGCGAGGATGTTAGTTGCTCTTACTCCT
CGAAGCCCTCCTCTTTAGCAGCAACAACAGCAGCAACAGGAGCGGGCGCC
GATTCCAGCCCTCCTTACCACGCACAATCACGACGGTATCGCAGCAGTAG
CAGCGTGAGTAGCACCTCGTCCTCCTCCGCCTCCCCCCGTAACCCCGCCT
CCACCAGGATCGACAACAGCAACCATCACACTGTCCGTAGAGACCAAGAA
CGCGCCTGCTCCCGTATGTCCTTCTCTTCCTCCTCTTCCTCCTCCTCCCC
CTTCTCCTATCCATCCTCCACTTCCGTCTCCATGCCTCTCTCCCACCCTC
TTACCTCTTTGCAGAGCACCGCCCGAGCTAATCGCCGTTCATCTTCAGGG
CCAAGAGACGCCACGATGGTATCGGCGAGTCGACGACGAGAAGAGAGGGA
GAACATGCATTTGACGCTCTTGAGGGAGGAAGGAATGGAAGTACTGAAGC
ACGGTAGATTTGGATGTGTCATTCCTCACTATCGCTTTTTATTTGTGGAT
CGCGAGGAGCTTTATTGGTGTCGACGGGAGGAGGTGGGGAAGAGGAAGAG
GCAGCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGAGGAGGGGAAAGG
GGAGCTTGTTGTTGCGGAATCTGATGCAAGTGAAGCTGAAGAAGAGAGCG
AGGATTGTTTCTCTAGAGTTTAAGGAAAGGTCATTGGTCGTGGAGGCGTT
GGGGGGTGAAGAGTTTGATGTGCTTGCGGGAATTTTCACAAGGGTTATGA
GTGAGAATATGGGGGGAAACAGAGGGCCGGTTGTGATCACTCGCGGGAAG
AGGTATTAG

Synonyms

Publications