jgi.p|Nanoce1779_2|585159, mRNA_3272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585159
Unique NamemRNA_3272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1314
Alignment locationscaffold_7:1071239..1072552 +

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Properties
Property NameValue
TranscriptId585245
TrackFilteredModels2
ProteinId585159
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1071239..1072552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585159gene_3272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585159mRNA_3272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3272CDS_3272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3272 ID=mRNA_3272|Name=jgi.p|Nanoce1779_2|585159|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
GCTGACAGCAGGCTTGGCATCTTCGGGTGCGGGTCCGATCTGGGGCCGAG
ATTTCGCATGCCAAATCTCATTGACCACCGGCGCAACCACGCTGGCAATG
GTAGTGGGCGAGCACATCATTGTAATAGACATGTGAACTCTCCTTCGCCG
TGGCCCTTTTCCAAATCTCTTTGTCTACAATCGGGAGGGTGGGCGAGGTC
GATCGACCTCCTTGCCCTCCTCTGATACCCTCCTCCGGGACAGACAAACC
TAATGCGATTTCCACATCATCATATCCGCCGTAGGCGTCCGTCTTCTTGC
CTAACACGTCGAATCCTTTCTATTTGCCTCTATCTAGCTCTTCACTGTCT
CCGCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTCCTCAATGAAGCAG
CGGCCTCCGTCAAGCACGACCGTGTAAATGACGACGACGAAAACATACAC
GACGCCCCCCCGCCGCCTCCGACGCCATTGCACACCGATATGCGTGCTCA
GCGATGTAAAGGCAACATCCTGGAGTCGTTATCGGAAATCAGTCTGGAGA
ATGAGGATGCGGATGAAGGCGGGGCCTGGCCGCAGCGCCCGGGAGGGAGC
ATGCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGGCCATCGAGAAAGT
GCGGAACCAGATAAATGCTTTGAACGCCGTGCCGTCTCGAGGCGGTGCGA
GTCCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGCAGCATCAGGAGGA
AAGCTGTCGTTTGCCTTGCCCTCGGCCTTGGACCAGGCCACAGCTTCCTT
TGGGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGGATGCACAGCGGCG
GCGGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGGCGGAAAGGGTTCA
GGACGCAAGGCGGTGTTATCAACGAAAGCTAGGCAGCGGAAGGTGGTAGG
GACCGAGAGGGAGGAGGCGTACAACGACAGGCTGACAGGTCGGGTGGTGA
AGCACAATAAGCGTAAGGAGCGCATGGAGCGACTCCGACGTGTTTATTGA
ACAATATGATTGATTGGTCCGAGATCGGGAAGGTGGGAGCTGTAAAAATA
ATTGAAGGAGAGGAGGGAAGGATAGAAAGGCAGAAGCTGAGAAGGGAAAG
CTCACATGTAATCACGATGTCCGCAGCCAGCCAGCAAAAACGTTAAACGA
GAGCTAATGATATCAAAATACCGGAAGCTGTGCTTCCAGTAACTGTTCTG
CATTGGAAAACATCACACCCAACAGAAGGAAGGAAAGAAACAATCATGCA
GTCAATGTACTTAA
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protein sequence of jgi.p|Nanoce1779_2|585159

>mRNA_3272-protein ID=mRNA_3272-protein|Name=jgi.p|Nanoce1779_2|585159|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRFPHHHIRRRRPSSCLTRRILSICLYLALHCLRNMSGADCRGQVLNEAA
ASVKHDRVNDDDENIHDAPPPPPTPLHTDMRAQRCKGNILESLSEISLEN
EDADEGGAWPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGAS
PAASYRSGGGAAASGGKLSFALPSALDQATASFGGETETLASFDRMHSGG
GKGRGQGGIGSGGKGSGRKAVLSTKARQRKVVGTEREEAYNDRLTGRVVK
HNKRKERMERLRRVY*
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mRNA from alignment at scaffold_7:1071239..1072552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3272 ID=mRNA_3272|Name=jgi.p|Nanoce1779_2|585159|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at scaffold_7:1071239..1072552+ (Nannochloropsis oceanica)
GCTGACAGCAGGCTTGGCATCTTCGGGTGCGGGTCCGATCTGGGGCCGAG
ATTTCGCATGCCAAATCTCATTGACCACCGGCGCAACCACGCTGGCAATG
GTAGTGGGCGAGCACATCATTGTAATAGACATGTGAACTCTCCTTCGCCG
TGGCCCTTTTCCAAATCTCTTTGTCTACAATCGGGAGGGTGGGCGAGGTC
GATCGACCTCCTTGCCCTCCTCTGATACCCTCCTCCGGGACAGACAAACC
TAATGCGATTTCCACATCATCATATCCGCCGTAGGCGTCCGTCTTCTTGC
CTAACACGTCGAATCCTTTCTATTTGCCTCTATCTAGCTCTTCACTGTCT
CCGCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTCCTCAATGAAGCAG
CGGCCTCCGTCAAGCACGACCGTGTAAATGACGACGACGAAAACATACAC
GACGCCCCCCCGCCGCCTCCGACGCCATTGCACACCGATATGCGTGCTCA
GCGATGTAAAGGCAACATCCTGGAGTCGTTATCGGAAATCAGTCTGGAGA
ATGAGGATGCGGATGAAGGCGGGGCCTGGCCGCAGCGCCCGGGAGGGAGC
ATGCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGGCCATCGAGAAAGT
GCGGAACCAGATAAATGCTTTGAACGCCGTGCCGTCTCGAGGCGGTGCGA
GTCCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGCAGCATCAGGAGGA
AAGCTGTCGTTTGCCTTGCCCTCGGCCTTGGACCAGGCCACAGCTTCCTT
TGGGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGGATGCACAGCGGCG
GCGGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGGCGGAAAGGGTTCA
GGACGCAAGGCGGTGTTATCAACGAAAGCTAGGCAGCGGAAGGTGGTAGG
GACCGAGAGGGAGGAGGCGTACAACGACAGGCTGACAGGTCGGGTGGTGA
AGCACAATAAGCGTAAGGAGCGCATGGAGCGACTCCGACGTGTTTATTGA
ACAATATGATTGATTGGTCCGAGATCGGGAAGGTGGGAGCTGTAAAAATA
ATTGAAGGAGAGGAGGGAAGGATAGAAAGGCAGAAGCTGAGAAGGGAAAG
CTCACATGTAATCACGATGTCCGCAGCCAGCCAGCAAAAACGTTAAACGA
GAGCTAATGATATCAAAATACCGGAAGCTGTGCTTCCAGTAACTGTTCTG
CATTGGAAAACATCACACCCAACAGAAGGAAGGAAAGAAACAATCATGCA
GTCAATGTACTTAA
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Coding sequence (CDS) from alignment at scaffold_7:1071239..1072552+

>mRNA_3272 ID=mRNA_3272|Name=jgi.p|Nanoce1779_2|585159|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_7:1071239..1072552+ (Nannochloropsis oceanica)
ATGCGATTTCCACATCATCATATCCGCCGTAGGCGTCCGTCTTCTTGCCT
AACACGTCGAATCCTTTCTATTTGCCTCTATCTAGCTCTTCACTGTCTCC
GCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTCCTCAATGAAGCAGCG
GCCTCCGTCAAGCACGACCGTGTAAATGACGACGACGAAAACATACACGA
CGCCCCCCCGCCGCCTCCGACGCCATTGCACACCGATATGCGTGCTCAGC
GATGTAAAGGCAACATCCTGGAGTCGTTATCGGAAATCAGTCTGGAGAAT
GAGGATGCGGATGAAGGCGGGGCCTGGCCGCAGCGCCCGGGAGGGAGCAT
GCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGGCCATCGAGAAAGTGC
GGAACCAGATAAATGCTTTGAACGCCGTGCCGTCTCGAGGCGGTGCGAGT
CCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGCAGCATCAGGAGGAAA
GCTGTCGTTTGCCTTGCCCTCGGCCTTGGACCAGGCCACAGCTTCCTTTG
GGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGGATGCACAGCGGCGGC
GGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGGCGGAAAGGGTTCAGG
ACGCAAGGCGGTGTTATCAACGAAAGCTAGGCAGCGGAAGGTGGTAGGGA
CCGAGAGGGAGGAGGCGTACAACGACAGGCTGACAGGTCGGGTGGTGAAG
CACAATAAGCGTAAGGAGCGCATGGAGCGACTCCGACGTGTTTATTGA
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Synonyms
Publications