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Properties
| Property Name | Value |
|---|
| TranscriptId | 585235 |
| Track | FilteredModels2 |
| ProteinId | 585149 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:1066046..1068543 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3270 ID=mRNA_3270|Name=jgi.p|Nanoce1779_2|585149|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
AGCCACAGTAGGCATGCGTCGACACGGCTGGAATCTCCTTCGACGCGCGA
CGCGGGGGCACCACCTGGCACCGGTAGCTTTTTTATCGTCGAGCAGACAA
GCTACCGCGGCATCCAATGCCACCTTTCCCTTGACTTCCCTCCATCGAAG
CCCTACGTCCCCTGCCTCCTCCATCTCCTCACCCTGTCATGCTACACCTC
ACACTACAACGACGGCAACTGCCGCTGCCTTGTTGCTGGGCGCGCTGCTC
CTAGGACAAGATCACGAAAATGTTGCGGCTCAGGACGCGAAGGTATTTCG
TTTCTTAGCGTGTAGGATAGCAGGCCTCTATTTGGTAACGCAGAGCGCCC
AATGTCACATTTGCTGCGTTCCTATCCATTTCTTTTTCTCTCCTCTCCAC
GGATCATCAACAAGCATGAAGAATGTTGCATTGCAATCGTCAGAGGATAA
TTATCAACTCATCTTCTTTCTTGTCTTTCATCCCTCCCTCGCGTTCGGTA
TACCCGCAGACTCTCCCTCCCAAAGGCTCTGCTCACGGCAATGGCCTCGG
CCGCTACTTCGTCGCTGACGCTGTCGAAGCCGCCGCACCCGCCGTGGCCA
ACATAACAGTTAACATCAAATTCCACGCAGGGAGGTGGATGCCTACATAT
GCGACACAGTCAGGTTCCGGGTTTGTGATCTCAGAAGATGGGCTGGTGGT
GACGAACGCACATGTGGTTGCCTCAAGCATAGGAGAGGACAATCCGGTAA
TGATAACCCTGACGGATGGACGGAGATTTTCAGGGAAGGTGCACAGCGTT
GACACTCGTACCGACGTAGCCCTGCTGCAAGTAGAGACCAAGGGACAAAA
GCTGCCAGTGGCTCGGATCGGTCAAAGCTCGAGCTTGCGGCCGGGCGAAT
GGGTGGTGGCGTTGGGGAGCCCCCAGGGGTTGGCCAACACTGTGACTGTG
GGAATCGTGAGTGCGGTGGCAAGGCTGGGATCGGAGTTGGGGTTATTGCA
CACCAGGGCGGAGTATATCCAGACGGACGCCGCGATTAATGCTGGGAATT
CGGGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTATTAGCAGC
ATGAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCCATTGACAG
CGCCTACCAGATTATAAAACAACTTGTCAAATACAAGCGAGTCCGCCGTC
CTTATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGTTTGAAGCCC
ACCAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGTAAAGCCGGG
GAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGATCGTAGAGA
TCGATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAGAAAATTGGA
TTGGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGAGGGGGAAGG
AAAACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGAGGGGGGAGT
GAGGGAGAAGGAGGTACAGACGGAAAGGGGGACGATGAGAGAATTTACGA
CTGTAGGGAGAAAGTATAGGAGGTGGTGAGGAGAGAAGGAAGAATATGGT
AGGATTGTGTTTTGAAAACAGAAAAAAACAGGAGAAATGTTATG back to topprotein sequence of jgi.p|Nanoce1779_2|585149 >mRNA_3270-protein ID=mRNA_3270-protein|Name=jgi.p|Nanoce1779_2|585149|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MLHCNRQRIIINSSSFLSFIPPSRSVYPQTLPPKGSAHGNGLGRYFVADA
VEAAAPAVANITVNIKFHAGRWMPTYATQSGSGFVISEDGLVVTNAHVVA
SSIGEDNPVMITLTDGRRFSGKVHSVDTRTDVALLQVETKGQKLPVARIG
QSSSLRPGEWVVALGSPQGLANTVTVGIVSAVARLGSELGLLHTRAEYIQ
TDAAINAGNSGGPLVNLDGEVVGISSMKLEYSDGIGFAIPIDSAYQIIKQ
LVKYKRVRRPYVGLSFRLVTVEGLKPTKETKEVGMLVLEVKPGSPAEKAG
LQEGDVIVEIDGAKVRGLGDVTEKIGLEPERTFQVKVIREGEGKQMVMGV
TSVADERGE* back to topmRNA from alignment at scaffold_7:1066046..1068543+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3270 ID=mRNA_3270|Name=jgi.p|Nanoce1779_2|585149|organism=Nannochloropsis oceanica|type=mRNA|length=2498bp|location=Sequence derived from alignment at scaffold_7:1066046..1068543+ (Nannochloropsis oceanica)
AGCCACAGTAGGCATGCGTCGACACGGCTGGAATCTCCTTCGACGCGCGA
CGCGGGGGCACCACCTGGCACCGGTAGCTTTTTTATCGTCGAGCAGGTTA
GTCAAAGTGAAGGGCACTTGGCCCCTGAGTGGAACATATCGACAGACGAG
GCTTGTATGTGAGTCGTACAGGTCCCAAGTCCACTTAAGCCGGCCCTGTA
TACCCTTATACACTGTACAGACAAGCTACCGCGGCATCCAATGCCACCTT
TCCCTTGACTTCCCTCCATCGAAGCCCTACGTCCCCTGCCTCCTCCATCT
CCTCACCCTGTCATGCTACACCTCACACTACAACGACGGCAACTGCCGCT
GCCTTGTTGCTGGGCGCGCTGCTCCTAGGACAAGATCACGAAAATGTTGC
GGCTCAGGACGCGAAGGTATTTCGTTTCTTAGCGTGTAGGATAGCAGGCC
TCTATTTGGTAACGCAGAGCGCCCAATGTCACATTTGCTGCGTTCCTATC
CATTTCTTTTTCTCTCCTCTCCACGGATCATCAACAAGCATGAAGAATGT
TGCATTGCAATCGTCAGAGGATAATTATCAACTCATCTTCTTTCTTGTCT
TTCATCCCTCCCTCGCGTTCGGTATACCCGCAGACTCTCCCTCCCAAAGG
CTCTGCTCACGGCAATGGCCTCGGCCGCTACTTCGTCGCTGACGCTGTCG
AAGCCGCCGCACCCGCCGTGGCCAACATAACAGTTAACATCAAATTCCAC
GCAGGGAGGTGGATGCCTACATATGCGACACAGTCAGGTACGATAAGCTC
CGATTCGATGCATGCGGGAGAAAAGGAGGGAGGGAGGGAGGGAGGGAGGA
AGGAAGGAAGGGAAGGGGTAAGGACTCGTGAGTACTAGCACTTTACCAAC
ACGGTTCTGACCTCGCGTCTTCCTTTCTTAGAGCCTTCATAACGATCCTT
TGGACCTATACCAAGGCAAGGCATACCCATCATAACGCACCCTGATCCAA
CTAATGAAACGCTTTACGCGCACATTCAGGTTCCGGGTTTGTGATCTCAG
AAGATGGGCTGGTGGTGACGAACGCACATGTGGTTGCCTCAAGCATAGGA
GAGGACAATCCGGTAATGATAACCCTGACGGATGGACGGAGATTTTCAGG
GAAGGTAAGGGAAAAAGGAAAAGGAGAAAGTGAAAAGGAGCGAGGGGTTG
TGGCTCCTATTTGAAAAGCCAGTAGTATGCTAACTTTCCCCTCCCTCCCT
CCCTCCATCTCTCCCCCGCTCCGTTCCTCCTTTCCTCATTTCCTCCCGTT
CCACCAGGTGCACAGCGTTGACACTCGTACCGACGTAGCCCTGCTGCAAG
TAGAGACCAAGGGACAAAAGCTGCCAGTGGCTCGGATCGGTCAAAGCTCG
AGCTTGCGGCCGGGCGAATGGGTGGTGGCGTTGGGGAGCCCCCAGGGGTT
GGCCAACACTGTGACTGTGGGAATCGTGAGTGCGGTGGCAAGGCTGGGAT
CGGAGTTGGGGTTATTGCACACCAGGGCGGAGTATATCCAGACGGACGCC
GCGATTAATGCTGGGAATTCGGGTGCGTTGCGTGGTTCCATTGTACTTAT
TCATCTACCCACCCCTTTGTAATTATATGTTCATTTAGTTGATAAAAATG
CATATCCTATTCATTTACTAATTTTCGATTTCTTTCTCTTCATTTCAATC
TATTAGTAGATCTTACATTTTCCTAATCCACCAAATTACGAAATTCGAAA
AACAGGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTATTAGCA
GCATGAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCCATTGAC
AGCGCCTACCAGGTAAAACTGTGGTGATGGCTAGTCGACCAACCCCGGGG
AGCGAGGGAGGGAAGGATAGCTCTACTGAATCGAGACTACTTGAGGATTG
ATTCAAAAACATTATTTATTCATCCATTCTACTCCCTGAAATTGCCTCCC
TACTGGTAAACCAGATTATAAAACAACTTGTCAAATACAAGCGAGTCCGC
CGTCCTTATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGTTTGAA
GCCCACCAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGTAAAGC
CGGGGAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGATCGTA
GAGATCGATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAGAAAAT
TGGATTGGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGAGGGGG
AAGGAAAACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGAGGGGG
GAGTGAGGGAGAAGGAGGTACAGACGGAAAGGGGGACGATGAGAGAATTT
ACGACTGTAGGGAGAAAGTATAGGAGGTGGTGAGGAGAGAAGGAAGAATA
TGGTAGGATTGTGTTTTGAAAACAGAAAAAAACAGGAGAAATGTTATG back to topCoding sequence (CDS) from alignment at scaffold_7:1066046..1068543+ >mRNA_3270 ID=mRNA_3270|Name=jgi.p|Nanoce1779_2|585149|organism=Nannochloropsis oceanica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_7:1066046..1068543+ (Nannochloropsis oceanica)
ATGTTGCATTGCAATCGTCAGAGGATAATTATCAACTCATCTTCTTTCTT
GTCTTTCATCCCTCCCTCGCGTTCGGTATACCCGCAGACTCTCCCTCCCA
AAGGCTCTGCTCACGGCAATGGCCTCGGCCGCTACTTCGTCGCTGACGCT
GTCGAAGCCGCCGCACCCGCCGTGGCCAACATAACAGTTAACATCAAATT
CCACGCAGGGAGGTGGATGCCTACATATGCGACACAGTCAGGTTCCGGGT
TTGTGATCTCAGAAGATGGGCTGGTGGTGACGAACGCACATGTGGTTGCC
TCAAGCATAGGAGAGGACAATCCGGTAATGATAACCCTGACGGATGGACG
GAGATTTTCAGGGAAGGTGCACAGCGTTGACACTCGTACCGACGTAGCCC
TGCTGCAAGTAGAGACCAAGGGACAAAAGCTGCCAGTGGCTCGGATCGGT
CAAAGCTCGAGCTTGCGGCCGGGCGAATGGGTGGTGGCGTTGGGGAGCCC
CCAGGGGTTGGCCAACACTGTGACTGTGGGAATCGTGAGTGCGGTGGCAA
GGCTGGGATCGGAGTTGGGGTTATTGCACACCAGGGCGGAGTATATCCAG
ACGGACGCCGCGATTAATGCTGGGAATTCGGGTGGACCCCTGGTTAACCT
TGATGGAGAGGTGGTGGGTATTAGCAGCATGAAGCTCGAGTACTCGGACG
GCATCGGGTTTGCAATTCCCATTGACAGCGCCTACCAGATTATAAAACAA
CTTGTCAAATACAAGCGAGTCCGCCGTCCTTATGTCGGCCTCTCCTTCCG
CCTCGTCACCGTCGAAGGTTTGAAGCCCACCAAAGAGACAAAAGAGGTGG
GCATGTTGGTACTCGAAGTAAAGCCGGGGAGCCCGGCAGAGAAAGCAGGG
TTGCAGGAAGGAGATGTGATCGTAGAGATCGATGGGGCTAAAGTGAGGGG
GTTGGGAGATGTGACGGAGAAAATTGGATTGGAGCCGGAGAGGACGTTCC
AAGTCAAGGTGATCAGGGAGGGGGAAGGAAAACAGATGGTGATGGGTGTG
ACAAGCGTGGCGGATGAGAGGGGGGAGTGAATGTTGCATTGCAATCGTCA
GAGGATAATTATCAACTCATCTTCTTTCTTGTCTTTCATCCCTCCCTCGC
GTTCGGTATACCCGCAGACTCTCCCTCCCAAAGGCTCTGCTCACGGCAAT
GGCCTCGGCCGCTACTTCGTCGCTGACGCTGTCGAAGCCGCCGCACCCGC
CGTGGCCAACATAACAGTTAACATCAAATTCCACGCAGGGAGGTGGATGC
CTACATATGCGACACAGTCAGGTTCCGGGTTTGTGATCTCAGAAGATGGG
CTGGTGGTGACGAACGCACATGTGGTTGCCTCAAGCATAGGAGAGGACAA
TCCGGTAATGATAACCCTGACGGATGGACGGAGATTTTCAGGGAAGGTGC
ACAGCGTTGACACTCGTACCGACGTAGCCCTGCTGCAAGTAGAGACCAAG
GGACAAAAGCTGCCAGTGGCTCGGATCGGTCAAAGCTCGAGCTTGCGGCC
GGGCGAATGGGTGGTGGCGTTGGGGAGCCCCCAGGGGTTGGCCAACACTG
TGACTGTGGGAATCGTGAGTGCGGTGGCAAGGCTGGGATCGGAGTTGGGG
TTATTGCACACCAGGGCGGAGTATATCCAGACGGACGCCGCGATTAATGC
TGGGAATTCGGGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTA
TTAGCAGCATGAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCC
ATTGACAGCGCCTACCAGATTATAAAACAACTTGTCAAATACAAGCGAGT
CCGCCGTCCTTATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGTT
TGAAGCCCACCAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGTA
AAGCCGGGGAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGAT
CGTAGAGATCGATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAGA
AAATTGGATTGGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGAG
GGGGAAGGAAAACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGAG
GGGGGAGTGAATGTTGCATTGCAATCGTCAGAGGATAATTATCAACTCAT
CTTCTTTCTTGTCTTTCATCCCTCCCTCGCGTTCGGTATACCCGCAGACT
CTCCCTCCCAAAGGCTCTGCTCACGGCAATGGCCTCGGCCGCTACTTCGT
CGCTGACGCTGTCGAAGCCGCCGCACCCGCCGTGGCCAACATAACAGTTA
ACATCAAATTCCACGCAGGGAGGTGGATGCCTACATATGCGACACAGTCA
GGTTCCGGGTTTGTGATCTCAGAAGATGGGCTGGTGGTGACGAACGCACA
TGTGGTTGCCTCAAGCATAGGAGAGGACAATCCGGTAATGATAACCCTGA
CGGATGGACGGAGATTTTCAGGGAAGGTGCACAGCGTTGACACTCGTACC
GACGTAGCCCTGCTGCAAGTAGAGACCAAGGGACAAAAGCTGCCAGTGGC
TCGGATCGGTCAAAGCTCGAGCTTGCGGCCGGGCGAATGGGTGGTGGCGT
TGGGGAGCCCCCAGGGGTTGGCCAACACTGTGACTGTGGGAATCGTGAGT
GCGGTGGCAAGGCTGGGATCGGAGTTGGGGTTATTGCACACCAGGGCGGA
GTATATCCAGACGGACGCCGCGATTAATGCTGGGAATTCGGGTGGACCCC
TGGTTAACCTTGATGGAGAGGTGGTGGGTATTAGCAGCATGAAGCTCGAG
TACTCGGACGGCATCGGGTTTGCAATTCCCATTGACAGCGCCTACCAGAT
TATAAAACAACTTGTCAAATACAAGCGAGTCCGCCGTCCTTATGTCGGCC
TCTCCTTCCGCCTCGTCACCGTCGAAGGTTTGAAGCCCACCAAAGAGACA
AAAGAGGTGGGCATGTTGGTACTCGAAGTAAAGCCGGGGAGCCCGGCAGA
GAAAGCAGGGTTGCAGGAAGGAGATGTGATCGTAGAGATCGATGGGGCTA
AAGTGAGGGGGTTGGGAGATGTGACGGAGAAAATTGGATTGGAGCCGGAG
AGGACGTTCCAAGTCAAGGTGATCAGGGAGGGGGAAGGAAAACAGATGGT
GATGGGTGTGACAAGCGTGGCGGATGAGAGGGGGGAGTGAATGTTGCATT
GCAATCGTCAGAGGATAATTATCAACTCATCTTCTTTCTTGTCTTTCATC
CCTCCCTCGCGTTCGGTATACCCGCAGACTCTCCCTCCCAAAGGCTCTGC
TCACGGCAATGGCCTCGGCCGCTACTTCGTCGCTGACGCTGTCGAAGCCG
CCGCACCCGCCGTGGCCAACATAACAGTTAACATCAAATTCCACGCAGGG
AGGTGGATGCCTACATATGCGACACAGTCAGGTTCCGGGTTTGTGATCTC
AGAAGATGGGCTGGTGGTGACGAACGCACATGTGGTTGCCTCAAGCATAG
GAGAGGACAATCCGGTAATGATAACCCTGACGGATGGACGGAGATTTTCA
GGGAAGGTGCACAGCGTTGACACTCGTACCGACGTAGCCCTGCTGCAAGT
AGAGACCAAGGGACAAAAGCTGCCAGTGGCTCGGATCGGTCAAAGCTCGA
GCTTGCGGCCGGGCGAATGGGTGGTGGCGTTGGGGAGCCCCCAGGGGTTG
GCCAACACTGTGACTGTGGGAATCGTGAGTGCGGTGGCAAGGCTGGGATC
GGAGTTGGGGTTATTGCACACCAGGGCGGAGTATATCCAGACGGACGCCG
CGATTAATGCTGGGAATTCGGGTGGACCCCTGGTTAACCTTGATGGAGAG
GTGGTGGGTATTAGCAGCATGAAGCTCGAGTACTCGGACGGCATCGGGTT
TGCAATTCCCATTGACAGCGCCTACCAGATTATAAAACAACTTGTCAAAT
ACAAGCGAGTCCGCCGTCCTTATGTCGGCCTCTCCTTCCGCCTCGTCACC
GTCGAAGGTTTGAAGCCCACCAAAGAGACAAAAGAGGTGGGCATGTTGGT
ACTCGAAGTAAAGCCGGGGAGCCCGGCAGAGAAAGCAGGGTTGCAGGAAG
GAGATGTGATCGTAGAGATCGATGGGGCTAAAGTGAGGGGGTTGGGAGAT
GTGACGGAGAAAATTGGATTGGAGCCGGAGAGGACGTTCCAAGTCAAGGT
GATCAGGGAGGGGGAAGGAAAACAGATGGTGATGGGTGTGACAAGCGTGG
CGGATGAGAGGGGGGAGTGAATGTTGCATTGCAATCGTCAGAGGATAATT
ATCAACTCATCTTCTTTCTTGTCTTTCATCCCTCCCTCGCGTTCGGTATA
CCCGCAGACTCTCCCTCCCAAAGGCTCTGCTCACGGCAATGGCCTCGGCC
GCTACTTCGTCGCTGACGCTGTCGAAGCCGCCGCACCCGCCGTGGCCAAC
ATAACAGTTAACATCAAATTCCACGCAGGGAGGTGGATGCCTACATATGC
GACACAGTCAGGTTCCGGGTTTGTGATCTCAGAAGATGGGCTGGTGGTGA
CGAACGCACATGTGGTTGCCTCAAGCATAGGAGAGGACAATCCGGTAATG
ATAACCCTGACGGATGGACGGAGATTTTCAGGGAAGGTGCACAGCGTTGA
CACTCGTACCGACGTAGCCCTGCTGCAAGTAGAGACCAAGGGACAAAAGC
TGCCAGTGGCTCGGATCGGTCAAAGCTCGAGCTTGCGGCCGGGCGAATGG
GTGGTGGCGTTGGGGAGCCCCCAGGGGTTGGCCAACACTGTGACTGTGGG
AATCGTGAGTGCGGTGGCAAGGCTGGGATCGGAGTTGGGGTTATTGCACA
CCAGGGCGGAGTATATCCAGACGGACGCCGCGATTAATGCTGGGAATTCG
GGTGGACCCCTGGTTAACCTTGATGGAGAGGTGGTGGGTATTAGCAGCAT
GAAGCTCGAGTACTCGGACGGCATCGGGTTTGCAATTCCCATTGACAGCG
CCTACCAGATTATAAAACAACTTGTCAAATACAAGCGAGTCCGCCGTCCT
TATGTCGGCCTCTCCTTCCGCCTCGTCACCGTCGAAGGTTTGAAGCCCAC
CAAAGAGACAAAAGAGGTGGGCATGTTGGTACTCGAAGTAAAGCCGGGGA
GCCCGGCAGAGAAAGCAGGGTTGCAGGAAGGAGATGTGATCGTAGAGATC
GATGGGGCTAAAGTGAGGGGGTTGGGAGATGTGACGGAGAAAATTGGATT
GGAGCCGGAGAGGACGTTCCAAGTCAAGGTGATCAGGGAGGGGGAAGGAA
AACAGATGGTGATGGGTGTGACAAGCGTGGCGGATGAGAGGGGGGAGTGA back to top
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