jgi.p|Nanoce1779_2|576985, mRNA_327 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576985
Unique Name	mRNA_327
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1493
Alignment location	scaffold_3:810910..812718 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577071
Track	FilteredModels2
ProteinId	576985

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:810910..812718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576985	gene_327	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576985	mRNA_327-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_327	CDS_327	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:810910..812718+
coding sequence from alignment at scaffold_3:810910..812718+

mRNA sequence

>mRNA_327 ID=mRNA_327|Name=jgi.p|Nanoce1779_2|576985|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
ACAGGCTATACGCCACGGGACTTGGTAGGGTAGAGCATTTATCCATCCTG
CGGGGCCCATCCGAGAGCAACGTAAAAAAGCATGGCAAGTGGCAGTGCCA
TCGCCCCTTCCCTCCTGCAGCCGCCCCCCCATGTAAGCACTGTTCGTGAG
CAAGATGTGCACCATCGCCCATTCCTCACCCGCACATATTCACACAACTA
CAAGCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGCAGGTA
TGGCCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGGGACTC
GGAGGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATACCTTGT
GCGTCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGTGGCCA
TCCTCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACGGGCAA
GTCGTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAAGCGGT
CTGTGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTAGGGCAGC
TAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGCTGACG
TTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGATTTGCG
GAATACCCCCTCCACCTCTTGGGCAGAAAAGAATGGCAAGCCCTCGTCCG
CTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGCATTTT
TCCTTAACGTCCAATCAGATGACAGAATATCGGCAGCGATACGACGATCT
GGTGACGTTCACGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAACG
CCCTGGACTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGCC
GACGTGGGAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCAA
CCTTCACAAGCGACGCCGGTAAGAGAAAAATACCAATCTTGCGTCGGTTG
ATTCGTGGACGTGAACAACTGCGATCAATGCTTAACTTTATTGTGCCATA
TTTCAATTCTAAACCCCACATACCAATCTTCTTCTACGAAGCTCCAGGGC
CTCGTCCTTCTCACCCGTCTCAATCATCCCCGGAATCGCCTCCCACGCCC
ACAAGAGTCCCTCTGCACTCGATGCTCGCCATGAGAAATGCAACCTCTAC
TGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATGGCTGAAAG
GGGCAAAGTGTCAAGAAAAATGCTGCTAGTCCTGTTGCTTGTGGCGATAT
TCTTGGGACACAAAGTGAGGGAAAATTTTGGGTTGTGGTGGTGGTTCTTC
TAAGTAGACGGGAAAAATGAATGAGCGAGTGAGCAATCGAGAGAGAACGA
AAGAGAGACCGAGATAGAGGAAGGAAGAAGAGATGATTTTGAGTACGTAC
GCAGAGAAAGACCGCGAAGAATGTAAAATCAAATGGTTTTGGA

protein sequence of jgi.p|Nanoce1779_2|576985

>mRNA_327-protein ID=mRNA_327-protein|Name=jgi.p|Nanoce1779_2|576985|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MASGSAIAPSLLQPPPHVSTVREQDVHHRPFLTRTYSHNYKLSISPCGKT
VVGEAGMAKTLVTVSNPTSDPGLGGVAFKIKTTKPKRYLVRPNQSILMAG
ERREVAILMSPEKQAEARQEHGQVVMDKFQVVYLPLNKAVCDSFEKSGDV
KEQVGQLERLWQLADKRAVCKLTFEVEIALQEETSTQDLRNTPSTSWAEK
NGKPSSAPSSVGELHSPGSVMHFSLTSNQMTEYRQRYDDLVTFTVALTNE
RDLLINALDSVKLQLRRELSSHADVGKLGPEDAVNYELLNLHKRRR*

mRNA from alignment at scaffold_3:810910..812718+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_327 ID=mRNA_327|Name=jgi.p|Nanoce1779_2|576985|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_3:810910..812718+ (Nannochloropsis oceanica)
ACAGGCTATACGCCACGGGACTTGGTAGGGTAGAGCATTTATCCATCCTG
CGGGGCCCATCCGAGAGCAACGTAAAAAAGCATGGCAAGTGGCAGTGCCA
TCGCCCCTTCCCTCCTGCAGCCGCCCCCCCATGTAAGCACTGTTCGTGAG
CAAGATGTGCACCATCGCCCATTCCTCACCCGCACATATTCACACAACTA
CAAGCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGCAGGTA
TGGCCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGGGACTC
GGAGGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATACCTTGT
GCGTCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGTGGCCA
TCCTCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACGGGCAA
GTCGTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAAGCGGT
CTGTGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTACGGAGTA
TATGAAATGACTTACTTTTCGGGTCTATTTGGCTTCATCTGATGACCTTC
ACTAACGTCCGTCCCGTTTTTTACGAATGTTCCCTTACCGCCCTTCTGTC
GACTTCTTTTAAACGTAGGTAGGGCAGCTAGAGCGGCTTTGGCAGCTAGC
CGACAAGCGAGCTGTATGTAAGCTGACGTTTGAAGTGGAAATAGCCTTAC
AAGAGGAAACCTCTACCCAAGATTTGCGGAATACCCCCTCCACCTCTTGG
GCAGAAAAGAATGGCAAGCCCTCGTCCGCTCCGTCCTCGGTGGGCGAGCT
GCACAGCCCTGGGTCCGTCATGCATTTTTCCTTAACGTCCAATCAGGTAG
GCTATGTTTAAATTTGTAAGTCAAAGGGAAAATCCATTAACTCATATCTT
TCTCTATTGATTTTTTACTCCCTTGCAGATGACAGAATATCGGCAGCGAT
ACGACGATCTGGTGACGTTCACGGTCAGTGAATCCTCCCTTTGTCCCCTT
TCTCATTTTTGCTGTCTATACTGCCGCTTTTCATTTTTGTTGCACGCCAA
TAACAACCCATTCTCCACTTCTACTCCAGGTGGCACTTACCAATGAAAGG
GACCTGCTCATCAACGCCCTGGACTCCGTCAAACTGCAGCTACGGCGAGA
GTTGTCAAGCCATGCCGACGTGGGAAAATTGGGACCAGAGGATGCGGTAA
ACTATGAGCTTCTCAACCTTCACAAGCGACGCCGGTAAGAGAAAAATACC
AATCTTGCGTCGGTTGATTCGTGGACGTGAACAACTGCGATCAATGCTTA
ACTTTATTGTGCCATATTTCAATTCTAAACCCCACATACCAATCTTCTTC
TACGAAGCTCCAGGGCCTCGTCCTTCTCACCCGTCTCAATCATCCCCGGA
ATCGCCTCCCACGCCCACAAGAGTCCCTCTGCACTCGATGCTCGCCATGA
GAAATGCAACCTCTACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTATGGCTGAAAGGGGCAAAGTGTCAAGAAAAATGCTGCTAGTCCTG
TTGCTTGTGGCGATATTCTTGGGACACAAAGTGAGGGAAAATTTTGGGTT
GTGGTGGTGGTTCTTCTAAGTAGACGGGAAAAATGAATGAGCGAGTGAGC
AATCGAGAGAGAACGAAAGAGAGACCGAGATAGAGGAAGGAAGAAGAGAT
GATTTTGAGTACGTACGCAGAGAAAGACCGCGAAGAATGTAAAATCAAAT
GGTTTTGGA

Coding sequence (CDS) from alignment at scaffold_3:810910..812718+

>mRNA_327 ID=mRNA_327|Name=jgi.p|Nanoce1779_2|576985|organism=Nannochloropsis oceanica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_3:810910..812718+ (Nannochloropsis oceanica)
ATGGCAAGTGGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCGCCCCCCCA
TGTAAGCACTGTTCGTGAGCAAGATGTGCACCATCGCCCATTCCTCACCC
GCACATATTCACACAACTACAAGCTGTCAATTTCTCCGTGTGGCAAGACA
GTTGTGGGCGAAGCAGGTATGGCCAAGACTCTCGTGACCGTGAGTAATCC
CACGTCGGACCCGGGACTCGGAGGTGTGGCTTTCAAAATCAAGACCACAA
AGCCAAAGCGATACCTTGTGCGTCCCAATCAAAGCATCCTTATGGCAGGG
GAGCGAAGAGAAGTGGCCATCCTCATGTCTCCCGAGAAACAGGCGGAAGC
ACGACAGGAGCACGGGCAAGTCGTAATGGACAAGTTCCAAGTGGTGTACT
TGCCTCTGAACAAAGCGGTCTGTGATAGCTTTGAAAAATCAGGAGATGTC
AAGGAGCAGGTAGGGCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCG
AGCTGTATGTAAGCTGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAA
CCTCTACCCAAGATTTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAG
AATGGCAAGCCCTCGTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCC
TGGGTCCGTCATGCATTTTTCCTTAACGTCCAATCAGATGACAGAATATC
GGCAGCGATACGACGATCTGGTGACGTTCACGGTGGCACTTACCAATGAA
AGGGACCTGCTCATCAACGCCCTGGACTCCGTCAAACTGCAGCTACGGCG
AGAGTTGTCAAGCCATGCCGACGTGGGAAAATTGGGACCAGAGGATGCGG
TAAACTATGAGCTTCTCAACCTTCACAAGCGACGCCGGTAAATGGCAAGT
GGCAGTGCCATCGCCCCTTCCCTCCTGCAGCCGCCCCCCCATGTAAGCAC
TGTTCGTGAGCAAGATGTGCACCATCGCCCATTCCTCACCCGCACATATT
CACACAACTACAAGCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGC
GAAGCAGGTATGGCCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGA
CCCGGGACTCGGAGGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGC
GATACCTTGTGCGTCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGA
GAAGTGGCCATCCTCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGA
GCACGGGCAAGTCGTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGA
ACAAAGCGGTCTGTGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAG
GTAGGGCAGCTAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATG
TAAGCTGACGTTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCC
AAGATTTGCGGAATACCCCCTCCACCTCTTGGGCAGAAAAGAATGGCAAG
CCCTCGTCCGCTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGT
CATGCATTTTTCCTTAACGTCCAATCAGATGACAGAATATCGGCAGCGAT
ACGACGATCTGGTGACGTTCACGGTGGCACTTACCAATGAAAGGGACCTG
CTCATCAACGCCCTGGACTCCGTCAAACTGCAGCTACGGCGAGAGTTGTC
AAGCCATGCCGACGTGGGAAAATTGGGACCAGAGGATGCGGTAAACTATG
AGCTTCTCAACCTTCACAAGCGACGCCGGTAAATGGCAAGTGGCAGTGCC
ATCGCCCCTTCCCTCCTGCAGCCGCCCCCCCATGTAAGCACTGTTCGTGA
GCAAGATGTGCACCATCGCCCATTCCTCACCCGCACATATTCACACAACT
ACAAGCTGTCAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGCAGGT
ATGGCCAAGACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGGGACT
CGGAGGTGTGGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATACCTTG
TGCGTCCCAATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGTGGCC
ATCCTCATGTCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACGGGCA
AGTCGTAATGGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAAGCGG
TCTGTGATAGCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTAGGGCAG
CTAGAGCGGCTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGCTGAC
GTTTGAAGTGGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGATTTGC
GGAATACCCCCTCCACCTCTTGGGCAGAAAAGAATGGCAAGCCCTCGTCC
GCTCCGTCCTCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGCATTT
TTCCTTAACGTCCAATCAGATGACAGAATATCGGCAGCGATACGACGATC
TGGTGACGTTCACGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAAC
GCCCTGGACTCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGC
CGACGTGGGAAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCA
ACCTTCACAAGCGACGCCGGTAAATGGCAAGTGGCAGTGCCATCGCCCCT
TCCCTCCTGCAGCCGCCCCCCCATGTAAGCACTGTTCGTGAGCAAGATGT
GCACCATCGCCCATTCCTCACCCGCACATATTCACACAACTACAAGCTGT
CAATTTCTCCGTGTGGCAAGACAGTTGTGGGCGAAGCAGGTATGGCCAAG
ACTCTCGTGACCGTGAGTAATCCCACGTCGGACCCGGGACTCGGAGGTGT
GGCTTTCAAAATCAAGACCACAAAGCCAAAGCGATACCTTGTGCGTCCCA
ATCAAAGCATCCTTATGGCAGGGGAGCGAAGAGAAGTGGCCATCCTCATG
TCTCCCGAGAAACAGGCGGAAGCACGACAGGAGCACGGGCAAGTCGTAAT
GGACAAGTTCCAAGTGGTGTACTTGCCTCTGAACAAAGCGGTCTGTGATA
GCTTTGAAAAATCAGGAGATGTCAAGGAGCAGGTAGGGCAGCTAGAGCGG
CTTTGGCAGCTAGCCGACAAGCGAGCTGTATGTAAGCTGACGTTTGAAGT
GGAAATAGCCTTACAAGAGGAAACCTCTACCCAAGATTTGCGGAATACCC
CCTCCACCTCTTGGGCAGAAAAGAATGGCAAGCCCTCGTCCGCTCCGTCC
TCGGTGGGCGAGCTGCACAGCCCTGGGTCCGTCATGCATTTTTCCTTAAC
GTCCAATCAGATGACAGAATATCGGCAGCGATACGACGATCTGGTGACGT
TCACGGTGGCACTTACCAATGAAAGGGACCTGCTCATCAACGCCCTGGAC
TCCGTCAAACTGCAGCTACGGCGAGAGTTGTCAAGCCATGCCGACGTGGG
AAAATTGGGACCAGAGGATGCGGTAAACTATGAGCTTCTCAACCTTCACA
AGCGACGCCGGTAA

Synonyms

Publications