jgi.p|Nanoce1779_2|585142, mRNA_3268 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585142
Unique NamemRNA_3268
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length897
Alignment locationscaffold_7:1060767..1061990 -

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Properties
Property NameValue
TranscriptId585228
TrackFilteredModels2
ProteinId585142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1060767..1061990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585142gene_3268Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585142mRNA_3268-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3268CDS_3268Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3268 ID=mRNA_3268|Name=jgi.p|Nanoce1779_2|585142|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
GGTGGTTGTCCTCTTGGCGGCCGTAAAGGTGCAAGCGGACTCGGCAGACC
TCTACGCAGTACAGTGCGCCAAGGCCTTCGGAAAAGCTCTAAAGGCCGCG
ACTGCCGAGATCGAGTCCTTAAAAAGCGAAGTAGCAGAAGGCAAGCTCGT
TTCCAATTTTGGTGCCAAGGCCGATGCGATCTGCAATACTGCCTTGAGCA
CCTTCGCGATGGAGGCCCCGGACGCCGACAAGGATCCTATCAAGGTTCAG
ATTCACGATAAGCAAGTGGAGGAGCTGGAGAAATCGATGGATCCGCCTCT
GAATGTCTTGTTTATCCGTCAGTTGCTCACTCTGCGTGATAAGGCCCTAC
AGCGGTACAAGACCCAGGCGAAGGGGACGGAGACGAGCGATTACGAAGCC
ATGCAAGCCGCCGATGCCTACTTCTCCTCGGAAGCCGAGGCCTGCGTCCG
CGCCGGATCCGACTGGGATTACGCCGCCGAACGTGCCAGTCTGCAGCAAA
CCATGAATTTCATCGCTCAGAAGAACAAGAAGCTGCTCGACGTCAAGTCT
CAAGCTGCCCAAACCCAGCAGCAAACGATGGCCCTCCTCCAACAGCAGCA
ATCCCAAATGATGCAACTCCAGAACGCCCTCGGCGGCGGCTCCCCCCTTA
ACCTGGGCCTAAGCTACCGTATCCCCGATACGAACATCAATGTTCAATAC
ACTTTCCAACAGGGGCGAACCAACGTCCAGTTTACATGCATTCCTGATGA
CCAAGCTCCCTTCCTGGGCCCGCAGGGTTTTACGCACGGTATTGGCCCGG
GCAACTTGGGAGTAACGGTTAATTTGAATGTTTAGATGATTTAGGGGGGA
AAGGAGGGAGATAGGGAGGAGGGAGGAGGGGAAGAGGGGGGTTCGCA
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protein sequence of jgi.p|Nanoce1779_2|585142

>mRNA_3268-protein ID=mRNA_3268-protein|Name=jgi.p|Nanoce1779_2|585142|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MEAPDADKDPIKVQIHDKQVEELEKSMDPPLNVLFIRQLLTLRDKALQRY
KTQAKGTETSDYEAMQAADAYFSSEAEACVRAGSDWDYAAERASLQQTMN
FIAQKNKKLLDVKSQAAQTQQQTMALLQQQQSQMMQLQNALGGGSPLNLG
LSYRIPDTNINVQYTFQQGRTNVQFTCIPDDQAPFLGPQGFTHGIGPGNL
GVTVNLNV*
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mRNA from alignment at scaffold_7:1060767..1061990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3268 ID=mRNA_3268|Name=jgi.p|Nanoce1779_2|585142|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_7:1060767..1061990- (Nannochloropsis oceanica)
GGTGGTTGTCCTCTTGGCGGCCGTAAAGGTGCAAGCGGACTCGGCAGACC
TCTACGCAGTACAGTGCGCCAAGGTAAGAGAGGCTAAAGGTGTGATTGAG
GATATGAGGGGAGGAAGGGGCTGGAATGGCTCTCTGGCCTCGGCCTTGTT
AGGTGAGATTTCTCGTCGACGATGATGATGGGTGAGCCCCCGTGAGACAT
GTTCTCAAGGGCTTGTGGTATAAATGATGGGACTTCAAGACCAAGCAAGA
GGAAGGATTTTTCGTCTGTGCATATCTTGAGAAATCGCGTGGAAGAGTCT
TGTGACGCCGAGCTCATTCATTTCCCCACCCTACACCCCAAACCCCCATT
TCCATCTCACCTCCCTCCCACCTCTGGTCCCCCTCCGTCCCCTCCGATAG
GCCTTCGGAAAAGCTCTAAAGGCCGCGACTGCCGAGATCGAGTCCTTAAA
AAGCGAAGTAGCAGAAGGCAAGCTCGTTTCCAATTTTGGTGCCAAGGCCG
ATGCGATCTGCAATACTGCCTTGAGCACCTTCGCGATGGAGGCCCCGGAC
GCCGACAAGGATCCTATCAAGGTTCAGATTCACGATAAGCAAGTGGAGGA
GCTGGAGAAATCGATGGATCCGCCTCTGAATGTCTTGTTTATCCGTCAGT
TGCTCACTCTGCGTGATAAGGCCCTACAGCGGTACAAGACCCAGGCGAAG
GGGACGGAGACGAGCGATTACGAAGCCATGCAAGCCGCCGATGCCTACTT
CTCCTCGGAAGCCGAGGCCTGCGTCCGCGCCGGATCCGACTGGGATTACG
CCGCCGAACGTGCCAGTCTGCAGCAAACCATGAATTTCATCGCTCAGAAG
AACAAGAAGCTGCTCGACGTCAAGTCTCAAGCTGCCCAAACCCAGCAGCA
AACGATGGCCCTCCTCCAACAGCAGCAATCCCAAATGATGCAACTCCAGA
ACGCCCTCGGCGGCGGCTCCCCCCTTAACCTGGGCCTAAGCTACCGTATC
CCCGATACGAACATCAATGTTCAATACACTTTCCAACAGGGGCGAACCAA
CGTCCAGTTTACATGCATTCCTGATGACCAAGCTCCCTTCCTGGGCCCGC
AGGGTTTTACGCACGGTATTGGCCCGGGCAACTTGGGAGTAACGGTTAAT
TTGAATGTTTAGATGATTTAGGGGGGAAAGGAGGGAGATAGGGAGGAGGG
AGGAGGGGAAGAGGGGGGTTCGCA
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Coding sequence (CDS) from alignment at scaffold_7:1060767..1061990-

>mRNA_3268 ID=mRNA_3268|Name=jgi.p|Nanoce1779_2|585142|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_7:1060767..1061990- (Nannochloropsis oceanica)
ATGGAGGCCCCGGACGCCGACAAGGATCCTATCAAGGTTCAGATTCACGA
TAAGCAAGTGGAGGAGCTGGAGAAATCGATGGATCCGCCTCTGAATGTCT
TGTTTATCCGTCAGTTGCTCACTCTGCGTGATAAGGCCCTACAGCGGTAC
AAGACCCAGGCGAAGGGGACGGAGACGAGCGATTACGAAGCCATGCAAGC
CGCCGATGCCTACTTCTCCTCGGAAGCCGAGGCCTGCGTCCGCGCCGGAT
CCGACTGGGATTACGCCGCCGAACGTGCCAGTCTGCAGCAAACCATGAAT
TTCATCGCTCAGAAGAACAAGAAGCTGCTCGACGTCAAGTCTCAAGCTGC
CCAAACCCAGCAGCAAACGATGGCCCTCCTCCAACAGCAGCAATCCCAAA
TGATGCAACTCCAGAACGCCCTCGGCGGCGGCTCCCCCCTTAACCTGGGC
CTAAGCTACCGTATCCCCGATACGAACATCAATGTTCAATACACTTTCCA
ACAGGGGCGAACCAACGTCCAGTTTACATGCATTCCTGATGACCAAGCTC
CCTTCCTGGGCCCGCAGGGTTTTACGCACGGTATTGGCCCGGGCAACTTG
GGAGTAACGGTTAATTTGAATGTTTAG
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Synonyms
Publications