jgi.p|Nanoce1779_2|585141, mRNA_3267 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585141
Unique NamemRNA_3267
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length999
Alignment locationscaffold_7:1059768..1060766 +

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Properties
Property NameValue
TranscriptId585227
TrackFilteredModels2
ProteinId585141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1059768..1060766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585141gene_3267Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585141mRNA_3267-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3267CDS_3267Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3267 ID=mRNA_3267|Name=jgi.p|Nanoce1779_2|585141|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
AGACAGGCCACAGGCACGATCAGATTGACATTAGCTTCCGTCGTATCGCC
TTATCTTTGCCTTTCAACCGCTCCGCCATCCTTTCCGCTGTGCTGTGTAT
CAAGCCCACCATCAGCACAATGTCGGTACGATCCTGCAGTTTAGCTGTCC
TAGGACAAAAGCGTGCCTTGCTCGCTGCAATACAACCCGCTCAGTACACG
CAGCCCTGTGTATTGGTTGGAGGTGGAAGCATGGGACAGCATTTACGTCA
CTCCTTGGATCATTACCGCAAGTTATTTGAAGGCGTTGCCTCTCCTTCCT
CCTCTACTGGAGCCTCCTCCTCTCCGACCATCACTACCATCCAGTACGAC
GTCCGGGACCGCGGCACGGCGATCGAGAGCGACTTAGCTGCTGCACGACG
GGAGGTGGACCGACTGATGACCGAGATTCAAGCGCTGCCCGACGAGGCGT
TGACTCGGCCCGTGCAAGCCGCGTTTGTTCTATCGGCAGGAGGGGAGCAA
GCCTCGTTGCCCTCGACGCTGGGGAGGGAATTAGGGTTCTGCACCCATCA
TGCCATACATCATCATGCCTTGATTAGGGTGATTGCCTCAGCATTGAATA
TAAATGCCAAATTACCATCTGATTTTGGATTGGCTCCCTCAACCGCACAT
TACCAAAAATCGAATGCGCCTATTCCTCCTCCTACTTCTTCATCCTCTTC
CTCCTCTCCGTAGTCTTCCTGAGCGGAGGGAGATCACTGTCAATTAAAGG
CAGAGGAGGAGATAAATGCGAGAGTAAAAAATGTGCATACATGGTGGAAG
CTGGCGTGATGCTTCGTATAAATGTAGTACCTGATTGACCAGGAGTGCGA
GAGACCCAAAAAAGTGTATATGCGAAGGCTTCAGAAACAATCAAAAGAGG
ATATCATCCACTATCTGCATCTTTCCATATTGCTGATGCTACTGCTCTTC
TCTTCGTGCTTTTTTTGATATTCTTCTTATAGTCCCGCTCTTCTTCCTT
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protein sequence of jgi.p|Nanoce1779_2|585141

>mRNA_3267-protein ID=mRNA_3267-protein|Name=jgi.p|Nanoce1779_2|585141|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSVRSCSLAVLGQKRALLAAIQPAQYTQPCVLVGGGSMGQHLRHSLDHYR
KLFEGVASPSSSTGASSSPTITTIQYDVRDRGTAIESDLAAARREVDRLM
TEIQALPDEALTRPVQAAFVLSAGGEQASLPSTLGRELGFCTHHAIHHHA
LIRVIASALNINAKLPSDFGLAPSTAHYQKSNAPIPPPTSSSSSSSP*
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mRNA from alignment at scaffold_7:1059768..1060766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3267 ID=mRNA_3267|Name=jgi.p|Nanoce1779_2|585141|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at scaffold_7:1059768..1060766+ (Nannochloropsis oceanica)
AGACAGGCCACAGGCACGATCAGATTGACATTAGCTTCCGTCGTATCGCC
TTATCTTTGCCTTTCAACCGCTCCGCCATCCTTTCCGCTGTGCTGTGTAT
CAAGCCCACCATCAGCACAATGTCGGTACGATCCTGCAGTTTAGCTGTCC
TAGGACAAAAGCGTGCCTTGCTCGCTGCAATACAACCCGCTCAGTACACG
CAGCCCTGTGTATTGGTTGGAGGTGGAAGCATGGGACAGCATTTACGTCA
CTCCTTGGATCATTACCGCAAGTTATTTGAAGGCGTTGCCTCTCCTTCCT
CCTCTACTGGAGCCTCCTCCTCTCCGACCATCACTACCATCCAGTACGAC
GTCCGGGACCGCGGCACGGCGATCGAGAGCGACTTAGCTGCTGCACGACG
GGAGGTGGACCGACTGATGACCGAGATTCAAGCGCTGCCCGACGAGGCGT
TGACTCGGCCCGTGCAAGCCGCGTTTGTTCTATCGGCAGGAGGGGAGCAA
GCCTCGTTGCCCTCGACGCTGGGGAGGGAATTAGGGTTCTGCACCCATCA
TGCCATACATCATCATGCCTTGATTAGGGTGATTGCCTCAGCATTGAATA
TAAATGCCAAATTACCATCTGATTTTGGATTGGCTCCCTCAACCGCACAT
TACCAAAAATCGAATGCGCCTATTCCTCCTCCTACTTCTTCATCCTCTTC
CTCCTCTCCGTAGTCTTCCTGAGCGGAGGGAGATCACTGTCAATTAAAGG
CAGAGGAGGAGATAAATGCGAGAGTAAAAAATGTGCATACATGGTGGAAG
CTGGCGTGATGCTTCGTATAAATGTAGTACCTGATTGACCAGGAGTGCGA
GAGACCCAAAAAAGTGTATATGCGAAGGCTTCAGAAACAATCAAAAGAGG
ATATCATCCACTATCTGCATCTTTCCATATTGCTGATGCTACTGCTCTTC
TCTTCGTGCTTTTTTTGATATTCTTCTTATAGTCCCGCTCTTCTTCCTT
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Coding sequence (CDS) from alignment at scaffold_7:1059768..1060766+

>mRNA_3267 ID=mRNA_3267|Name=jgi.p|Nanoce1779_2|585141|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_7:1059768..1060766+ (Nannochloropsis oceanica)
ATGTCGGTACGATCCTGCAGTTTAGCTGTCCTAGGACAAAAGCGTGCCTT
GCTCGCTGCAATACAACCCGCTCAGTACACGCAGCCCTGTGTATTGGTTG
GAGGTGGAAGCATGGGACAGCATTTACGTCACTCCTTGGATCATTACCGC
AAGTTATTTGAAGGCGTTGCCTCTCCTTCCTCCTCTACTGGAGCCTCCTC
CTCTCCGACCATCACTACCATCCAGTACGACGTCCGGGACCGCGGCACGG
CGATCGAGAGCGACTTAGCTGCTGCACGACGGGAGGTGGACCGACTGATG
ACCGAGATTCAAGCGCTGCCCGACGAGGCGTTGACTCGGCCCGTGCAAGC
CGCGTTTGTTCTATCGGCAGGAGGGGAGCAAGCCTCGTTGCCCTCGACGC
TGGGGAGGGAATTAGGGTTCTGCACCCATCATGCCATACATCATCATGCC
TTGATTAGGGTGATTGCCTCAGCATTGAATATAAATGCCAAATTACCATC
TGATTTTGGATTGGCTCCCTCAACCGCACATTACCAAAAATCGAATGCGC
CTATTCCTCCTCCTACTTCTTCATCCTCTTCCTCCTCTCCGTAG
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Synonyms
Publications