jgi.p|Nanoce1779_2|625265, mRNA_3264 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625265
Unique NamemRNA_3264
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1634
Alignment locationscaffold_7:1050771..1052651 -

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Properties
Property NameValue
TranscriptId625351
TrackFilteredModels2
ProteinId625265
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1050771..1052651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625265gene_3264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625265mRNA_3264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3264CDS_3264Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3264 ID=mRNA_3264|Name=jgi.p|Nanoce1779_2|625265|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp
ATGGCGGAGGAGCTCATTGACTCGACCATCCGCAGCAGCGTGGCGCCGGC
GCGGGAGGTGTCTTACAGTGTGTGTGGGACAGTATTCAAGGTGGATAAGG
TCTATCAGGATTTGAAGCCAGTGGGCAAGGGATCGTATGGCATTGTCTGC
TCGGCATCAAATTCGGAGACGAATGAGAACGTGGCCATAAAGCGCGTATC
TCCCATCTCCACCCACGTCATCGATGCCAAGCACGTCCTGCGAGAAATCC
GAATGATGCGCCATTTAGGCACACACGAGAACATAATTACCCTTAAAGAC
CTCTTTCTCCGAGAATCTGAAGACGAGCTCTACATCGTCATGGAGCTCCT
CGACTCTGATCTCCATCGAATCATCCAATCTAAACAAGCGCTTTCGGACG
CCCACTTCCGCTTCTTCATGCACCAAGTCCTGAAGGGCCTGAAATTCCTT
CACGACCACCGCATAATCCACCGCGATCTCAAACCTGGCAATCTTCTTGT
CACGCGCTCCTGTGAGCTACGGATCACCGATTTCGGCCTCGCCCGGGCTC
GGCCCGCGGGGAAAGGTCCAAATCCCGATGAGTCGATTGAAGAGCCCATG
ACTGAGCACGTGGTTACCCGCTGGTATCGACCGCCAGAACTGATGCTGTG
CCCTGACGGGTTGTACGATTACGCGGTGGACATGTGGAGTGTTGGGTGCA
TTTTTGCTGAGCTCTTGGGCAGGAAACCCTTGTTTCCCGGTAAGAATTTC
GTCCATCAGTTGACATTGATATTTGATGTGATTGGCGCGCCGAGGGCACA
GGAGGTCGCGCACGTGAAGAGTAGTCAAGCAAAGCGTTTCTTGGAGTCAG
TGGCCGCGAAGAAGAAGGTGCCGTTTGCGACGCTTTTCCCTGAGGCCAGC
CGGGAAGCATTGTCGTTGTTAGGGTCGCTGTTGGTGTTTGACCCTTCCAA
TCGATTAACGGTCGATGAGGCGTTGGGCCATAAGTACTTTGAGCCCTTGC
GGAACTCGGCGCAATTGCAGCAGCAGCAGCTGGCGGCGGAGGCGGCTCAA
GCGTTGTTGCCTCCCCCAAAGCTGGATTTTTCGTTTGAACAAGGACATCT
GAGCAAGGGGCAGCTGAAGCACATGATTTATAGGGAGCTGCAGCATCTAT
GGGCAGGAGACCGCCCACCACCTCCCGGCATTTGCAACAACAGCAACAGC
AGGCAGCCGCTATCTCCTCCTCCTCGCCCTCCCTGGACTCGGACGACGGC
CTAAATCCCACTGATCTATCCGCTTCCGTCTCATCTACCACCTCCACCAC
CATGTCCCAAGCTCCCACTCAACGCGCGGGCATGAACATTAACCACAACG
CCAGCAATGGTCAACACCAACTCAGCGGCAGTGGCTGCCCTGGTCCTCAT
GAGCAGGCTTCGACGGGGTATTTCTCCGCCTCCCAAGCCTCCTCTCAATT
CTCTGTGTCTGGTGCATCGTCAGCATCGGGTACCGCCAGCAGCAGCGCGG
CAGGCCCAACGCCGCCTTTGCAGCGGTCATGGGGAAATGGAAGTGGGAGT
GGAGGCGGGGGAGGGAGGGATCGGCAGAAGCGACTGCAGAAGAAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
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protein sequence of jgi.p|Nanoce1779_2|625265

>mRNA_3264-protein ID=mRNA_3264-protein|Name=jgi.p|Nanoce1779_2|625265|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MAEELIDSTIRSSVAPAREVSYSVCGTVFKVDKVYQDLKPVGKGSYGIVC
SASNSETNENVAIKRVSPISTHVIDAKHVLREIRMMRHLGTHENIITLKD
LFLRESEDELYIVMELLDSDLHRIIQSKQALSDAHFRFFMHQVLKGLKFL
HDHRIIHRDLKPGNLLVTRSCELRITDFGLARARPAGKGPNPDESIEEPM
TEHVVTRWYRPPELMLCPDGLYDYAVDMWSVGCIFAELLGRKPLFPGKNF
VHQLTLIFDVIGAPRAQEVAHVKSSQAKRFLESVAAKKKVPFATLFPEAS
REALSLLGSLLVFDPSNRLTVDEALGHKYFEPLRNSAQLQQQQLAAEAAQ
ALLPPPKLDFSFEQGHLSKGQLKHMIYRELQHLWAGDRPPPPGICNNSNS
RQPLSPPPRPPWTRTTA*
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mRNA from alignment at scaffold_7:1050771..1052651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3264 ID=mRNA_3264|Name=jgi.p|Nanoce1779_2|625265|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp|location=Sequence derived from alignment at scaffold_7:1050771..1052651- (Nannochloropsis oceanica)
ATGGCGGAGGAGCTCATTGACTCGACCATCCGCAGCAGCGTGGCGCCGGC
GCGGGAGGTGTCTTACAGTGTGTGTGGGACAGTATTCAAGGTGGATAAGG
TCTATCAGGATTTGAAGCCAGTGGGCAAGGGATCGTATGGCATTGTCTGC
TCGGCATCAAATTCGGAGACGAATGAGAACGTGGCCATAAAGCGCGTATC
TCCCATCTCCACCCACGTCATCGATGCCAAGCACGTCCTGCGAGAAATCC
GAATGATGCGCCATTTAGGCACACACGAGAACATAATTACCCTTAAAGAC
CTCTTTCTCCGAGAATCTGAAGACGAGCTCTACATCGTCATGGAGCTCCT
CGACTCTGATCTCCATCGAATCATCCAATCTAAACAAGCGCTTTCGGACG
CCCACTTCCGCTTCTTCATGCACCAAGTCCTGAAGGGCCTGAAATTCCTT
CACGACCACCGCATAATCCACCGCGATCTCAAACCTGGCAATCTTCTTGT
CACGCGCTCCTGTGAGCTACGGATCACCGATTTCGGCCTCGCCCGGGCTC
GGCCCGCGGGGAAAGGTCCAAATCCCGATGAGTCGATTGAAGAGCCCATG
ACTGAGCACGTGGTTACCCGCTGGTATCGACCGCCAGAACTGATGCTGTG
CCCTGACGGGTTGTACGATTACGCGGTGGACATGTGGAGTGTTGGGTGCA
TTTTTGCTGAGCTCTTGGGCAGGAAACCCTTGTTTCCCGGTAAGAATTTC
GTCCATCAGTTGACATTGATATTTGATGTGATTGGCGCGCCGAGGGCACA
GGAGGTCGCGCACGTGAAGAGTAGTCAAGCAAAGCGTTTCTTGGAGTCAG
TGGCCGCGAAGAAGAAGGTGCCGTTTGCGACGCTTTTCCCTGAGGCCAGC
CGGGAAGCATTGTCGTTGTTAGGGTCGCTGTTGGTGTTTGACCCTTCCAA
TCGATTAACGGTCGATGAGGCGTTGGGCCATAAGTACTTTGAGCCCTTGC
GGAACTCGGCGCAATTGCAGCAGCAGCAGCTGGCGGCGGAGGCGGCTCAA
GCGTTGTTGCCTCCCCCAAAGCTGGATTTTTCGTTTGAACAAGGACATCT
GAGCAAGGGGCAGCTGAAGCACATGATTTATAGGGAGGTGGAATCGTTTA
GAAGGGAGAGGAGGGAGGCTTTGGGGCTGGGCCCGGAGGAGGAGACGGAG
GAGGTGAAGGATGGAAATGTAGCAGAGAAGGCTATGGAGGAAGGCGTAGA
GGTAGCCGGGGAGGGAAGGGAGAAGGACGGGATGGAGAGAGTGCCGGGGG
TTGTGAAACCTGTCGGAGGAGCGCAGGGACTGGCGAGTCGACGGCCCTCG
GCTATTTCGAGGGGAGCTGCTGCTGTTGCCGCAGCTGCAGCATCTATGGG
CAGGAGACCGCCCACCACCTCCCGGCATTTGCAACAACAGCAACAGCAGG
CAGCCGCTATCTCCTCCTCCTCGCCCTCCCTGGACTCGGACGACGGCCTA
AATCCCACTGATCTATCCGCTTCCGTCTCATCTACCACCTCCACCACCAT
GTCCCAAGCTCCCACTCAACGCGCGGGCATGAACATTAACCACAACGCCA
GCAATGGTCAACACCAACTCAGCGGCAGTGGCTGCCCTGGTCCTCATGAG
CAGGCTTCGACGGGGTATTTCTCCGCCTCCCAAGCCTCCTCTCAATTCTC
TGTGTCTGGTGCATCGTCAGCATCGGGTACCGCCAGCAGCAGCGCGGCAG
GCCCAACGCCGCCTTTGCAGCGGTCATGGGGAAATGGAAGTGGGAGTGGA
GGCGGGGGAGGGAGGGATCGGCAGAAGCGACTGCAGAAGAAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at scaffold_7:1050771..1052651-

>mRNA_3264 ID=mRNA_3264|Name=jgi.p|Nanoce1779_2|625265|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_7:1050771..1052651- (Nannochloropsis oceanica)
CTGCAGCATCTATGGGCAGGAGACCGCCCACCACCTCCCGGCATTTGCAA
CAACAGCAACAGCAGGCAGCCGCTATCTCCTCCTCCTCGCCCTCCCTGGA
CTCGGACGACGGCCTAAATGGCGGAGGAGCTCATTGACTCGACCATCCGC
AGCAGCGTGGCGCCGGCGCGGGAGGTGTCTTACAGTGTGTGTGGGACAGT
ATTCAAGGTGGATAAGGTCTATCAGGATTTGAAGCCAGTGGGCAAGGGAT
CGTATGGCATTGTCTGCTCGGCATCAAATTCGGAGACGAATGAGAACGTG
GCCATAAAGCGCGTATCTCCCATCTCCACCCACGTCATCGATGCCAAGCA
CGTCCTGCGAGAAATCCGAATGATGCGCCATTTAGGCACACACGAGAACA
TAATTACCCTTAAAGACCTCTTTCTCCGAGAATCTGAAGACGAGCTCTAC
ATCGTCATGGAGCTCCTCGACTCTGATCTCCATCGAATCATCCAATCTAA
ACAAGCGCTTTCGGACGCCCACTTCCGCTTCTTCATGCACCAAGTCCTGA
AGGGCCTGAAATTCCTTCACGACCACCGCATAATCCACCGCGATCTCAAA
CCTGGCAATCTTCTTGTCACGCGCTCCTGTGAGCTACGGATCACCGATTT
CGGCCTCGCCCGGGCTCGGCCCGCGGGGAAAGGTCCAAATCCCGATGAGT
CGATTGAAGAGCCCATGACTGAGCACGTGGTTACCCGCTGGTATCGACCG
CCAGAACTGATGCTGTGCCCTGACGGGTTGTACGATTACGCGGTGGACAT
GTGGAGTGTTGGGTGCATTTTTGCTGAGCTCTTGGGCAGGAAACCCTTGT
TTCCCGGTAAGAATTTCGTCCATCAGTTGACATTGATATTTGATGTGATT
GGCGCGCCGAGGGCACAGGAGGTCGCGCACGTGAAGAGTAGTCAAGCAAA
GCGTTTCTTGGAGTCAGTGGCCGCGAAGAAGAAGGTGCCGTTTGCGACGC
TTTTCCCTGAGGCCAGCCGGGAAGCATTGTCGTTGTTAGGGTCGCTGTTG
GTGTTTGACCCTTCCAATCGATTAACGGTCGATGAGGCGTTGGGCCATAA
GTACTTTGAGCCCTTGCGGAACTCGGCGCAATTGCAGCAGCAGCAGCTGG
CGGCGGAGGCGGCTCAAGCGTTGTTGCCTCCCCCAAAGCTGGATTTTTCG
TTTGAACAAGGACATCTGAGCAAGGGGCAGCTGAAGCACATGATTTATAG
GGAGCTGCAGCATCTATGGGCAGGAGACCGCCCACCACCTCCCGGCATTT
GCAACAACAGCAACAGCAGGCAGCCGCTATCTCCTCCTCCTCGCCCTCCC
TGGACTCGGACGACGGCCTAAATGGCGGAGGAGCTCATTGACTCGACCAT
CCGCAGCAGCGTGGCGCCGGCGCGGGAGGTGTCTTACAGTGTGTGTGGGA
CAGTATTCAAGGTGGATAAGGTCTATCAGGATTTGAAGCCAGTGGGCAAG
GGATCGTATGGCATTGTCTGCTCGGCATCAAATTCGGAGACGAATGAGAA
CGTGGCCATAAAGCGCGTATCTCCCATCTCCACCCACGTCATCGATGCCA
AGCACGTCCTGCGAGAAATCCGAATGATGCGCCATTTAGGCACACACGAG
AACATAATTACCCTTAAAGACCTCTTTCTCCGAGAATCTGAAGACGAGCT
CTACATCGTCATGGAGCTCCTCGACTCTGATCTCCATCGAATCATCCAAT
CTAAACAAGCGCTTTCGGACGCCCACTTCCGCTTCTTCATGCACCAAGTC
CTGAAGGGCCTGAAATTCCTTCACGACCACCGCATAATCCACCGCGATCT
CAAACCTGGCAATCTTCTTGTCACGCGCTCCTGTGAGCTACGGATCACCG
ATTTCGGCCTCGCCCGGGCTCGGCCCGCGGGGAAAGGTCCAAATCCCGAT
GAGTCGATTGAAGAGCCCATGACTGAGCACGTGGTTACCCGCTGGTATCG
ACCGCCAGAACTGATGCTGTGCCCTGACGGGTTGTACGATTACGCGGTGG
ACATGTGGAGTGTTGGGTGCATTTTTGCTGAGCTCTTGGGCAGGAAACCC
TTGTTTCCCGGTAAGAATTTCGTCCATCAGTTGACATTGATATTTGATGT
GATTGGCGCGCCGAGGGCACAGGAGGTCGCGCACGTGAAGAGTAGTCAAG
CAAAGCGTTTCTTGGAGTCAGTGGCCGCGAAGAAGAAGGTGCCGTTTGCG
ACGCTTTTCCCTGAGGCCAGCCGGGAAGCATTGTCGTTGTTAGGGTCGCT
GTTGGTGTTTGACCCTTCCAATCGATTAACGGTCGATGAGGCGTTGGGCC
ATAAGTACTTTGAGCCCTTGCGGAACTCGGCGCAATTGCAGCAGCAGCAG
CTGGCGGCGGAGGCGGCTCAAGCGTTGTTGCCTCCCCCAAAGCTGGATTT
TTCGTTTGAACAAGGACATCTGAGCAAGGGGCAGCTGAAGCACATGATTT
ATAGGGAG
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Synonyms
Publications