jgi.p|Nanoce1779_2|585097, mRNA_3260 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585097
Unique Name	mRNA_3260
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2073
Alignment location	scaffold_7:1035663..1037735 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585183
Track	FilteredModels2
ProteinId	585097

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1035663..1037735 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585097	gene_3260	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585097	mRNA_3260-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3260	CDS_3260	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1035663..1037735+
coding sequence from alignment at scaffold_7:1035663..1037735+

mRNA sequence

>mRNA_3260 ID=mRNA_3260|Name=jgi.p|Nanoce1779_2|585097|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
CCCGGACATACGGTCCCAAAATACATCCTTGCTTCGATGCTGCCGCTGCT
GCTGCTGCTGCAGCCACGCCACACCACTCTCACTGCCTCTATGTACGCAT
ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC
CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC
TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT
TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG
GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA
TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA
AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC
CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA
TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG
TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA
TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG
TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC
CGGTACGTGAAGAGTTTGGGAACGGGGGGAGGCTGGAGGGACGGAAAGAG
TAGCTAAGCGTCGGACCTTGTCACAAGCCAGACGGTGAATGTTTGTATGG
TTCTATAAATTTGTGCATGGTTACGATGTATTGCAATCCAGCTTGCCAGC
TTCAAACCTAATTGGGGTGGAAGATAGGCTTAATTATGGAATCGAGAGCC
CTCCCGGCAGTTTATTCAAGATCGCGTGTGCGCTACTGTCAGTACATCTT
AAGGACGAATCTTGTCGTCTGATTTCATGCATCCTTCATATTTTTCCGTA
GCTGATCGAGAAGCAGTGCCAAACCAAACACGACACAAAAGCCTCCTGAC
TACTTCCATCCCCACAAACAGGACAAAGACCTAGATCTGCAGCTCATGAT
CTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCGAGAGG
AAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGGAGCAG
CTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGACGCCG
ACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAAGCATC
TGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAACTCGG
GCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTGAATGG
TGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTCTTTCA
AGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAGATGTA
AATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGGTTCCC
GGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTCGGAAG
TGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCTTGGGC
GATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCAGAATG
CTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAGTTATG
AGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAATTTGG
GGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTGAAGCG
GTATAAGATTCGTGTGTAATAGCAAATGAAAGGATGTGGGTCAAAGATCG
TTAGTGGGGTGGACATGGAAACAAATGTTGTGTTGACATGTGCATTGCAT
TATTACCTTGGATAGGGTCCTGATATACCGGTGTTCGGCGAGACAGGCAG
AATTATAAAGTACCATGCACAAAATCAAATTTTCGAAATCGCTTTGATTA
AAAGAACCCACAAAACCACTCAA

protein sequence of jgi.p|Nanoce1779_2|585097

>mRNA_3260-protein ID=mRNA_3260-protein|Name=jgi.p|Nanoce1779_2|585097|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MISNYTVPALATGLRDREETLQLCAHLLANGDLEQLERVLHPYQAGLITR
RRRKTRSLDLAGGLTSKHLNMLRKYLQRSPRQLTRAVSLRASVVIPLCNV
NGVASVLFERRSSLVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIG
FPARSVDVLGVLRCDWSEVHKITGIGVTPVVGFLGDLTKRELSPNPDEVA
ECFTIPLATLLDEEHWSYEEEKGTVVFVGGPHVIWGLTAHLLLIFMKDIL
KRYKIRV*

mRNA from alignment at scaffold_7:1035663..1037735+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3260 ID=mRNA_3260|Name=jgi.p|Nanoce1779_2|585097|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp|location=Sequence derived from alignment at scaffold_7:1035663..1037735+ (Nannochloropsis oceanica)
CCCGGACATACGGTCCCAAAATACATCCTTGCTTCGATGCTGCCGCTGCT
GCTGCTGCTGCAGCCACGCCACACCACTCTCACTGCCTCTATGTACGCAT
ACACAGTCAAATAATCGTCAACCATCATGCTGCGAACGGTCCTGCGCCGC
CGACTTTTGTTGGGACGTAGCCGCAGCACGCCATCATTAGCAGCACCAGC
TTCACTCTTCCGACACCGGCCACCATCACTCACACCAAGCACACTTGGGT
TGTCCCGGGTGCTGCACCCGCAACGCATATCGTTTGAGAGCTACTTCTCG
GCAACGTTTTCGACATTTGACGACTCCTTGCCGCACAGGGACAGCCCCCA
TCATAAGAAGAAGAAGCGGGCAAGAGACCCTCTAACGGCCCGTGCAGCCA
AGGAGACCCCAGCTCCTGCTTCCGTCGAAGAACTTAAGCAGCACCATCAC
CCGCCGGCCATTGATAACAGCGGTATCCTGCAGGAAGGGGAGGACGAACA
TCGGCCGCCCGCCATCGCCGTGCGCGGGGCGCAGATGAAGGGGGGCAACG
TGGTATGGCGGGCCTCCGGGGATGAAGTCAAGCAGGCCAAGCCAGCGCAA
TGGGAGAAGGTCAGCGCGGAAGAAAATTTGCGCAGTACCATCAAAGAGAG
TAAAGTCGGTCCGTTTGATCCGAACTTTAAGTCGTTAGGTGTCATCGAGC
CGGTACGTGAAGAGTTTGGGAACGGGGGGAGGCTGGAGGGACGGAAAGAG
TAGCTAAGCGTCGGACCTTGTCACAAGCCAGACGGTGAATGTTTGTATGG
TTCTATAAATTTGTGCATGGTTACGATGTATTGCAATCCAGCTTGCCAGC
TTCAAACCTAATTGGGGTGGAAGATAGGCTTAATTATGGAATCGAGAGCC
CTCCCGGCAGTTTATTCAAGATCGCGTGTGCGCTACTGTCAGTACATCTT
AAGGACGAATCTTGTCGTCTGATTTCATGCATCCTTCATATTTTTCCGTA
GCTGATCGAGAAGCAGTGCCAAACCAAACACGACACAAAAGCCTCCTGAC
TACTTCCATCCCCACAAACAGGACAAAGACCTAGATCTGCAGCTCATGAT
CTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCGAGAGG
AAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGGAGCAG
CTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGACGCCG
ACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAAGCATC
TGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAACTCGG
GCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTGAATGG
TGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTCTTTCA
AGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAGATGTA
AATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGGTTCCC
GGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTCGGAAG
TGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCTTGGGC
GATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCAGAATG
CTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAGTTATG
AGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAATTTGG
GGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTGAAGCG
GTATAAGATTCGTGTGTAATAGCAAATGAAAGGATGTGGGTCAAAGATCG
TTAGTGGGGTGGACATGGAAACAAATGTTGTGTTGACATGTGCATTGCAT
TATTACCTTGGATAGGGTCCTGATATACCGGTGTTCGGCGAGACAGGCAG
AATTATAAAGTACCATGCACAAAATCAAATTTTCGAAATCGCTTTGATTA
AAAGAACCCACAAAACCACTCAA

Coding sequence (CDS) from alignment at scaffold_7:1035663..1037735+

>mRNA_3260 ID=mRNA_3260|Name=jgi.p|Nanoce1779_2|585097|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_7:1035663..1037735+ (Nannochloropsis oceanica)
ATGATCTCAAACTACACCGTACCGGCGCTCGCCACCGGCCTTCGAGATCG
AGAGGAAACTCTGCAACTCTGTGCCCATCTCCTGGCCAACGGCGACCTGG
AGCAGCTTGAACGCGTGCTCCATCCTTATCAAGCAGGCCTCATCACGCGA
CGCCGACGGAAAACACGCAGTTTGGACTTGGCTGGAGGTTTGACCTCCAA
GCATCTGAACATGCTGCGGAAGTATCTGCAGCGCTCTCCGCGGCAATTAA
CTCGGGCGGTGTCCCTACGCGCATCTGTCGTGATCCCTCTCTGCAATGTG
AATGGTGTGGCCTCTGTGCTCTTTGAGCGACGCTCTAGCTTGGTCCGCTC
TTTCAAGAACCAAGTCTGTTTCCCTGGTGGTATGGTGGAAGAGTCTTTAG
ATGTAAATATTATTGAGACATCGTTACGAGAGATGGAAGAAGAGATTGGG
TTCCCGGCTAGATCGGTGGATGTGCTGGGGGTCCTGCGCTGTGACTGGTC
GGAAGTGCACAAAATTACAGGTATCGGTGTCACGCCCGTCGTCGGCTTCT
TGGGCGATTTGACCAAGCGCGAGCTGTCCCCGAATCCAGACGAGGTAGCA
GAATGCTTTACGATTCCCTTGGCAACGCTCTTGGACGAGGAGCACTGGAG
TTATGAGGAGGAGAAGGGCACGGTGGTGTTTGTCGGTGGGCCCCACGTAA
TTTGGGGCCTCACGGCCCATTTACTTCTTATCTTCATGAAAGACATTTTG
AAGCGGTATAAGATTCGTGTGTAA

Synonyms

Publications