jgi.p|Nanoce1779_2|629493, mRNA_3259 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629493
Unique Name	mRNA_3259
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1373
Alignment location	scaffold_7:1033871..1035364 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629579
Track	FilteredModels2
ProteinId	629493

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1033871..1035364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629493	gene_3259	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629493	mRNA_3259-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3259	CDS_3259	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1033871..1035364+
coding sequence from alignment at scaffold_7:1033871..1035364+

mRNA sequence

>mRNA_3259 ID=mRNA_3259|Name=jgi.p|Nanoce1779_2|629493|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
CTCACGACTTCTTTATTCTTTCCTTCGAGTCAGCACGGAGAAGGCTTTAG
GCCTGCATGACTTGCATGCGTGCACGGAAATAATGCTCCGTGGCTTATTG
TTGTTGGACTGATGCTTCTTGAGGGGGCCCTGAGCCCAACCTCCCCACAA
CGACTCAGACTTTCGAAGGCGATGCCGAGCAGTCATGCCCCCTGTCCTCA
TTACATCCACCTCCAAACCACATCACCACAACCATTACATAAGGCTACAG
CTGGATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGG
GATGGGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGC
TTGGCCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAA
GACCATCATCGTCACAGGCAGCAACACAGGCATAGGCAAGGCTACTGCTC
TAAACATTGCAAAGATGGGTGCCACCGTCGTTTTGGCATGCCGCTCTCTG
GAGCGGGCTAAGGCGGCTCAAGAAGATATGCTGGTGGCGCTCAAGGCCCT
GGACACCTCTCGATACGATTTCCCCTTCGCTGCGAAAGGAACTTTTGTCT
GTTTGCCCTTGGATTTGAGCAGCTTTGCGTCCATCAAGGCTTTTGCCCAG
GAATACCGTGCTAAATTTAAGCGCTTGGATGCTCTTGTGCTGAACGCTGG
ATTGGCCAATGGCTCTGGGACAACCAAGGAGGGTTTCGAGGTGATGATGG
GGACCAACTACCTCGGGCACTTTTACCTGGTTAAGTTACTGTTGGACGTG
CTCAAAGCCACCCCGGACTCCCGCGTCGTGAGCGTGTCCTCTTTGATGCA
TGAATTCGGCTGCTTGGATTGGCAAGGAAGCCTGCAGAATAAATACAGCT
CTCTAAAAGACCGTCTCTTCTCAAGTCGTTACAATGATTCCAAGCTTGCC
CTGGTACTACTCACGCTCGAGCTCCGGCACCGTCTCAAGGGGACGTCCGT
CCGAGCCGTGGCTGTCTCACCTGGAGCAGTTGCCTCAGATATTTGGCGTA
GCTTTCCGTCATGGTACAAACGGCTTGTGCTTGACCCCGTGTCCTCCCTC
GCATTCCTCTCCAACGAGCAAGGAAGCATTCCGAGTGTCCATGCCGCTAC
CCACCGAGCATTGCCTTTGGAGGACAATGAAAACGAGACGGATGTCGTGT
ATTTCCACCCGTATTGGTCACCTTCTTCGCGATTTCTCATGCCGTTTGAA
GTCATGGGACCTTTCCATGGCTTCATTCGGGCCGGGCCGCGTTTGCCCGC
GAATGCGCGGGCTGTGGCAAAGGAATTGTGGTATCAGAGTGATAAACTTG
TCATCCAGCACGCTCCAGCATAA

protein sequence of jgi.p|Nanoce1779_2|629493

>mRNA_3259-protein ID=mRNA_3259-protein|Name=jgi.p|Nanoce1779_2|629493|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MLTPLHWVWNGPLALGWVVGSSIVFPVLRKLGLAAEPNTLDFTNDMRGKT
IIVTGSNTGIGKATALNIAKMGATVVLACRSLERAKAAQEDMLVALKALD
TSRYDFPFAAKGTFVCLPLDLSSFASIKAFAQEYRAKFKRLDALVLNAGL
ANGSGTTKEGFEVMMGTNYLGHFYLVKLLLDVLKATPDSRVVSVSSLMHE
FGCLDWQGSLQNKYSSLKDRLFSSRYNDSKLALVLLTLELRHRLKGTSVR
AVAVSPGAVASDIWRSFPSWYKRLVLDPVSSLAFLSNEQGSIPSVHAATH
RALPLEDNENETDVVYFHPYWSPSSRFLMPFEVMGPFHGFIRAGPRLPAN
ARAVAKELWYQSDKLVIQHAPA*

mRNA from alignment at scaffold_7:1033871..1035364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3259 ID=mRNA_3259|Name=jgi.p|Nanoce1779_2|629493|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at scaffold_7:1033871..1035364+ (Nannochloropsis oceanica)
CTCACGACTTCTTTATTCTTTCCTTCGAGTCAGCACGGAGAAGGCTTTAG
GCCTGCATGACTTGCATGCGTGCACGGAAATAATGCTCCGTGGCTTATTG
TTGTTGGACTGATGCTTCTTGAGGGGGCCCTGAGCCCAACCTCCCCACAA
CGACTCAGACTTTCGAAGGCGATGCCGAGCAGTCATGCCCCCTGTCCTCA
TTACATCCACCTCCAAACCACATCACCACAACCATTACATAAGGCTACAG
CTGGATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGG
GATGGGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGC
TTGGCCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAA
GACCATCATCGTCACAGGTAAATTTCTTTGCTCCTTAGGCCCTCATTTAC
TCCCTCCTTCCTTCCATTCCGAAAGCGGGGTATGTGCGAGAGAAGGTTAG
AACGGAAAGACTGATGCCTCTTCTATCATTTTCCCCAGGCAGCAACACAG
GCATAGGCAAGGCTACTGCTCTAAACATTGCAAAGATGGGTGCCACCGTC
GTTTTGGCATGCCGCTCTCTGGAGCGGGCTAAGGCGGCTCAAGAAGATAT
GCTGGTGGCGCTCAAGGCCCTGGACACCTCTCGATACGATTTCCCCTTCG
CTGCGAAAGGAACTTTTGTCTGTTTGCCCTTGGATTTGAGCAGCTTTGCG
TCCATCAAGGCTTTTGCCCAGGAATACCGTGCTAAATTTAAGCGCTTGGA
TGCTCTTGTGCTGAACGCTGGATTGGCCAATGGCTCTGGGACAACCAAGG
AGGGTTTCGAGGTGATGATGGGGACCAACTACCTCGGGCACTTTTACCTG
GTTAAGTTACTGTTGGACGTGCTCAAAGCCACCCCGGACTCCCGCGTCGT
GAGCGTGTCCTCTTTGATGCATGAATTCGGCTGCTTGGATTGGCAAGGAA
GCCTGCAGAATAAATACAGCTCTCTAAAAGACCGTCTCTTCTCAAGTCGT
TACAATGATTCCAAGCTTGCCCTGGTACTACTCACGCTCGAGCTCCGGCA
CCGTCTCAAGGGGACGTCCGTCCGAGCCGTGGCTGTCTCACCTGGAGCAG
TTGCCTCAGATATTTGGCGTAGCTTTCCGTCATGGTACAAACGGCTTGTG
CTTGACCCCGTGTCCTCCCTCGCATTCCTCTCCAACGAGCAAGGAAGCAT
TCCGAGTGTCCATGCCGCTACCCACCGAGCATTGCCTTTGGAGGACAATG
AAAACGAGACGGATGTCGTGTATTTCCACCCGTATTGGTCACCTTCTTCG
CGATTTCTCATGCCGTTTGAAGTCATGGGACCTTTCCATGGCTTCATTCG
GGCCGGGCCGCGTTTGCCCGCGAATGCGCGGGCTGTGGCAAAGGAATTGT
GGTATCAGAGTGATAAACTTGTCATCCAGCACGCTCCAGCATAA

Coding sequence (CDS) from alignment at scaffold_7:1033871..1035364+

>mRNA_3259 ID=mRNA_3259|Name=jgi.p|Nanoce1779_2|629493|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_7:1033871..1035364+ (Nannochloropsis oceanica)
ATGTTGACTCCCCTGCATTGGGTTTGGAATGGACCCCTTGCCCTGGGATG
GGTCGTAGGGTCTTCTATCGTCTTCCCAGTGCTGCGGAAATTAGGCTTGG
CCGCTGAGCCCAACACACTGGATTTTACAAATGACATGCGAGGCAAGACC
ATCATCGTCACAGGCAGCAACACAGGCATAGGCAAGGCTACTGCTCTAAA
CATTGCAAAGATGGGTGCCACCGTCGTTTTGGCATGCCGCTCTCTGGAGC
GGGCTAAGGCGGCTCAAGAAGATATGCTGGTGGCGCTCAAGGCCCTGGAC
ACCTCTCGATACGATTTCCCCTTCGCTGCGAAAGGAACTTTTGTCTGTTT
GCCCTTGGATTTGAGCAGCTTTGCGTCCATCAAGGCTTTTGCCCAGGAAT
ACCGTGCTAAATTTAAGCGCTTGGATGCTCTTGTGCTGAACGCTGGATTG
GCCAATGGCTCTGGGACAACCAAGGAGGGTTTCGAGGTGATGATGGGGAC
CAACTACCTCGGGCACTTTTACCTGGTTAAGTTACTGTTGGACGTGCTCA
AAGCCACCCCGGACTCCCGCGTCGTGAGCGTGTCCTCTTTGATGCATGAA
TTCGGCTGCTTGGATTGGCAAGGAAGCCTGCAGAATAAATACAGCTCTCT
AAAAGACCGTCTCTTCTCAAGTCGTTACAATGATTCCAAGCTTGCCCTGG
TACTACTCACGCTCGAGCTCCGGCACCGTCTCAAGGGGACGTCCGTCCGA
GCCGTGGCTGTCTCACCTGGAGCAGTTGCCTCAGATATTTGGCGTAGCTT
TCCGTCATGGTACAAACGGCTTGTGCTTGACCCCGTGTCCTCCCTCGCAT
TCCTCTCCAACGAGCAAGGAAGCATTCCGAGTGTCCATGCCGCTACCCAC
CGAGCATTGCCTTTGGAGGACAATGAAAACGAGACGGATGTCGTGTATTT
CCACCCGTATTGGTCACCTTCTTCGCGATTTCTCATGCCGTTTGAAGTCA
TGGGACCTTTCCATGGCTTCATTCGGGCCGGGCCGCGTTTGCCCGCGAAT
GCGCGGGCTGTGGCAAAGGAATTGTGGTATCAGAGTGATAAACTTGTCAT
CCAGCACGCTCCAGCATAAATGTTGACTCCCCTGCATTGGGTTTGGAATG
GACCCCTTGCCCTGGGATGGGTCGTAGGGTCTTCTATCGTCTTCCCAGTG
CTGCGGAAATTAGGCTTGGCCGCTGAGCCCAACACACTGGATTTTACAAA
TGACATGCGAGGCAAGACCATCATCGTCACAGGCAGCAACACAGGCATAG
GCAAGGCTACTGCTCTAAACATTGCAAAGATGGGTGCCACCGTCGTTTTG
GCATGCCGCTCTCTGGAGCGGGCTAAGGCGGCTCAAGAAGATATGCTGGT
GGCGCTCAAGGCCCTGGACACCTCTCGATACGATTTCCCCTTCGCTGCGA
AAGGAACTTTTGTCTGTTTGCCCTTGGATTTGAGCAGCTTTGCGTCCATC
AAGGCTTTTGCCCAGGAATACCGTGCTAAATTTAAGCGCTTGGATGCTCT
TGTGCTGAACGCTGGATTGGCCAATGGCTCTGGGACAACCAAGGAGGGTT
TCGAGGTGATGATGGGGACCAACTACCTCGGGCACTTTTACCTGGTTAAG
TTACTGTTGGACGTGCTCAAAGCCACCCCGGACTCCCGCGTCGTGAGCGT
GTCCTCTTTGATGCATGAATTCGGCTGCTTGGATTGGCAAGGAAGCCTGC
AGAATAAATACAGCTCTCTAAAAGACCGTCTCTTCTCAAGTCGTTACAAT
GATTCCAAGCTTGCCCTGGTACTACTCACGCTCGAGCTCCGGCACCGTCT
CAAGGGGACGTCCGTCCGAGCCGTGGCTGTCTCACCTGGAGCAGTTGCCT
CAGATATTTGGCGTAGCTTTCCGTCATGGTACAAACGGCTTGTGCTTGAC
CCCGTGTCCTCCCTCGCATTCCTCTCCAACGAGCAAGGAAGCATTCCGAG
TGTCCATGCCGCTACCCACCGAGCATTGCCTTTGGAGGACAATGAAAACG
AGACGGATGTCGTGTATTTCCACCCGTATTGGTCACCTTCTTCGCGATTT
CTCATGCCGTTTGAAGTCATGGGACCTTTCCATGGCTTCATTCGGGCCGG
GCCGCGTTTGCCCGCGAATGCGCGGGCTGTGGCAAAGGAATTGTGGTATC
AGAGTGATAAACTTGTCATCCAGCACGCTCCAGCATAA

Synonyms

Publications