jgi.p|Nanoce1779_2|401901, mRNA_3257 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|401901
Unique NamemRNA_3257
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1668
Alignment locationscaffold_7:1028714..1030565 -

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Properties
Property NameValue
TranscriptId401987
TrackFilteredModels2
ProteinId401901
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1028714..1030565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401901gene_3257Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401901mRNA_3257-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3257CDS_3257Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3257 ID=mRNA_3257|Name=jgi.p|Nanoce1779_2|401901|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
CGTCAACTTTACAGAATATATTGCACTCATACGCACGCCAAGGGGCTACA
CTCTCGCACCTGGTTAGGGCAACACCACACCGCTTGCTGTCACCATTACA
TGCTCCTCCTACGCCGCCGCCTCCCCATCCCGCTCCTCACCCTAGCCTCA
TCCCTCCATCGATCCTTTGCCAGCACCGCAGCTACAGCAGCAGGAGCACC
AACCACCACATCCTCCATCCCACCCTGTACTGTACAGATTGACCTAGCCG
AAGGTGCTGTAGACACAATTGGGGCCAAACATCGTCAAATTATTGGTCCC
CGCACCCTCGTCGTTAGCACACCAGGAGATCGGGCAGAGGACCCGCACGT
GCAGCGTGTCCTCGCCCGCTTACGCGGGGTAGGCATCCAATGCGGGACAT
TTTCGATGCTGGAGCGCTACCCGACCACTCAAGCCGTGGATGAAGGTGTG
GTGATTGCCAAGCGAATGGGGGCTCAGTCTGTCGTTGGTGTAGGCGGAGG
CGGCGTCCTGGATCTAGCCAAGGGAGTAGCTGCACTCGCATGTGCTCGCG
GTGGGGGTGCACGAGACCATCTCCGAGTGTTTCACAACGAAAAAGCATTA
CCAGCCCATCGTTTGGCAATCGTGACGGTGCCCACCACGGCAAGCACCGG
TGGAGGGAGTGTGGGACATCGAAGCTTTGTCTTGTACGAGCCGGAGGAGG
CATTGGTCCCTTTGTATGCTGCGGACCTGACGCCTGATGTTGCCGTGATT
GATCCTTCCTTGACCTCCACATTGCCCTCACAGGCAGAGCGTGCGATGGC
ATTAAGTGCCGTGTCAGTTTGTTTTGATGCTTTGGCATGTTGGAGCGCGA
GGGCCACATTGGAAAAAAATGGGATGGCAGGCTTGATCATTACATGTGCC
ACAGAGCTGGGCGCAGGGATGAGATTGGCTGGAGGCGGGAAACCTGGAGA
CAAGAAAGAGCAGAGGAGAAAAAGAATGCACCTCGCGCAGGGTAGTGTGA
CGGCAGGACAGTTGTTGGGGTTGGTAGAAGCGCCGCCTATACAGAGCTTG
GCACTATGCTTGGCACCGCTTTTCCCGCTGGCGTCTTATTCTCAACTTAC
AGCCGTGCTTTTAAGATCATACCTGGCCGTATTGGCCGATAGGCAACAGC
AGGGGGATATGGGTAGGTTGGATGTGTTTAACGAGGCATTTTTACGGCAA
ATGGGAGGGGTGATATGTGGTAGTGACAGTGGTGGGGGTGCGGTGGGGTT
GCTAGAGCTAGCTGAGTGGGTATGGGGGCAAAGTCAACAGGCAGGGATCC
GGCGCCTAGCGGATTATCGGGTGCCGGACAAGGAGGAGAAGACGGGGCAA
GCACTGACGGCGCAAGTCACTAGTGTGCTAGAGTTATTTCAGGTGGAGGG
AGGGGTGGCTTTGGAGACAGATGTAGTGAGGGACGTGATCGATGTGTCCT
TGGGGTCGTGAAAAGTGGGCTGGTCGTGAGGGATGGATGGATGAATCCAT
AAATAGATAGTTGAATTGATATTAAAAAATAGATTTTAGAAATTAGAGGT
AGAAATAAGCAGCAATAAAAAGAAACAGACCACTAAAATGCCCGGCTGTA
TGCTGCGCTTCCAAAAAGCTGACTAGAAGAAAAAAAGAGAGGAAGAAAGG
AAAAGATGGGAAAAAGCA
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protein sequence of jgi.p|Nanoce1779_2|401901

>mRNA_3257-protein ID=mRNA_3257-protein|Name=jgi.p|Nanoce1779_2|401901|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MLLLRRRLPIPLLTLASSLHRSFASTAATAAGAPTTTSSIPPCTVQIDLA
EGAVDTIGAKHRQIIGPRTLVVSTPGDRAEDPHVQRVLARLRGVGIQCGT
FSMLERYPTTQAVDEGVVIAKRMGAQSVVGVGGGGVLDLAKGVAALACAR
GGGARDHLRVFHNEKALPAHRLAIVTVPTTASTGGGSVGHRSFVLYEPEE
ALVPLYAADLTPDVAVIDPSLTSTLPSQAERAMALSAVSVCFDALACWSA
RATLEKNGMAGLIITCATELGAGMRLAGGGKPGDKKEQRRKRMHLAQGSV
TAGQLLGLVEAPPIQSLALCLAPLFPLASYSQLTAVLLRSYLAVLADRQQ
QGDMGRLDVFNEAFLRQMGGVICGSDSGGGAVGLLELAEWVWGQSQQAGI
RRLADYRVPDKEEKTGQALTAQVTSVLELFQVEGGVALETDVVRDVIDVS
LGS*
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mRNA from alignment at scaffold_7:1028714..1030565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3257 ID=mRNA_3257|Name=jgi.p|Nanoce1779_2|401901|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp|location=Sequence derived from alignment at scaffold_7:1028714..1030565- (Nannochloropsis oceanica)
CGTCAACTTTACAGAATATATTGCACTCATACGCACGCCAAGGGGCTACA
CTCTCGCACCTGGTCAGTCGTATGCATCCTAGATCCCTACGGGAGAATTC
CGCTGTTTCTTCTGTTGGAAACGCAGGAAGCCGACACGGTTTCCTCGGAC
CTCCCCAGGAGTTTTGTCATGTAATGTGCGCCACCCTATCGTAATTGCGT
CATGAGTTTTTACCTTTTTCCACTCCTCTCCATTCCCATATCATAGGTTA
GGGCAACACCACACCGCTTGCTGTCACCATTACATGCTCCTCCTACGCCG
CCGCCTCCCCATCCCGCTCCTCACCCTAGCCTCATCCCTCCATCGATCCT
TTGCCAGCACCGCAGCTACAGCAGCAGGAGCACCAACCACCACATCCTCC
ATCCCACCCTGTACTGTACAGATTGACCTAGCCGAAGGTGCTGTAGACAC
AATTGGGGCCAAACATCGTCAAATTATTGGTCCCCGCACCCTCGTCGTTA
GCACACCAGGAGATCGGGCAGAGGACCCGCACGTGCAGCGTGTCCTCGCC
CGCTTACGCGGGGTAGGCATCCAATGCGGGACATTTTCGATGCTGGAGCG
CTACCCGACCACTCAAGCCGTGGATGAAGGTGTGGTGATTGCCAAGCGAA
TGGGGGCTCAGTCTGTCGTTGGTGTAGGCGGAGGCGGCGTCCTGGATCTA
GCCAAGGGAGTAGCTGCACTCGCATGTGCTCGCGGTGGGGGTGCACGAGA
CCATCTCCGAGTGTTTCACAACGAAAAAGCATTACCAGCCCATCGTTTGG
CAATCGTGACGGTGCCCACCACGGCAAGCACCGGTGGAGGGAGTGTGGGA
CATCGAAGCTTTGTCTTGTACGAGCCGGAGGAGGCATTGGTCCCTTTGTA
TGCTGCGGACCTGACGCCTGATGTTGCCGTGATTGATCCTTCCTTGACCT
CCACATTGCCCTCACAGGCAGAGCGTGCGATGGCATTAAGTGCCGTGTCA
GTTTGTTTTGATGCTTTGGCATGTTGGAGCGCGAGGGCCACATTGGAAAA
AAATGGGATGGCAGGCTTGATCATTACATGTGCCACAGAGCTGGGCGCAG
GGATGAGATTGGCTGGAGGCGGGAAACCTGGAGACAAGAAAGAGCAGAGG
AGAAAAAGAATGCACCTCGCGCAGGGTAGTGTGACGGCAGGACAGTTGTT
GGGGTTGGTAGAAGCGCCGCCTATACAGAGCTTGGCACTATGCTTGGCAC
CGCTTTTCCCGCTGGCGTCTTATTCTCAACTTACAGCCGTGCTTTTAAGA
TCATACCTGGCCGTATTGGCCGATAGGCAACAGCAGGGGGATATGGGTAG
GTTGGATGTGTTTAACGAGGCATTTTTACGGCAAATGGGAGGGGTGATAT
GTGGTAGTGACAGTGGTGGGGGTGCGGTGGGGTTGCTAGAGCTAGCTGAG
TGGGTATGGGGGCAAAGTCAACAGGCAGGGATCCGGCGCCTAGCGGATTA
TCGGGTGCCGGACAAGGAGGAGAAGACGGGGCAAGCACTGACGGCGCAAG
TCACTAGTGTGCTAGAGTTATTTCAGGTGGAGGGAGGGGTGGCTTTGGAG
ACAGATGTAGTGAGGGACGTGATCGATGTGTCCTTGGGGTCGTGAAAAGT
GGGCTGGTCGTGAGGGATGGATGGATGAATCCATAAATAGATAGTTGAAT
TGATATTAAAAAATAGATTTTAGAAATTAGAGGTAGAAATAAGCAGCAAT
AAAAAGAAACAGACCACTAAAATGCCCGGCTGTATGCTGCGCTTCCAAAA
AGCTGACTAGAAGAAAAAAAGAGAGGAAGAAAGGAAAAGATGGGAAAAAG
CA
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Coding sequence (CDS) from alignment at scaffold_7:1028714..1030565-

>mRNA_3257 ID=mRNA_3257|Name=jgi.p|Nanoce1779_2|401901|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_7:1028714..1030565- (Nannochloropsis oceanica)
ATGCTCCTCCTACGCCGCCGCCTCCCCATCCCGCTCCTCACCCTAGCCTC
ATCCCTCCATCGATCCTTTGCCAGCACCGCAGCTACAGCAGCAGGAGCAC
CAACCACCACATCCTCCATCCCACCCTGTACTGTACAGATTGACCTAGCC
GAAGGTGCTGTAGACACAATTGGGGCCAAACATCGTCAAATTATTGGTCC
CCGCACCCTCGTCGTTAGCACACCAGGAGATCGGGCAGAGGACCCGCACG
TGCAGCGTGTCCTCGCCCGCTTACGCGGGGTAGGCATCCAATGCGGGACA
TTTTCGATGCTGGAGCGCTACCCGACCACTCAAGCCGTGGATGAAGGTGT
GGTGATTGCCAAGCGAATGGGGGCTCAGTCTGTCGTTGGTGTAGGCGGAG
GCGGCGTCCTGGATCTAGCCAAGGGAGTAGCTGCACTCGCATGTGCTCGC
GGTGGGGGTGCACGAGACCATCTCCGAGTGTTTCACAACGAAAAAGCATT
ACCAGCCCATCGTTTGGCAATCGTGACGGTGCCCACCACGGCAAGCACCG
GTGGAGGGAGTGTGGGACATCGAAGCTTTGTCTTGTACGAGCCGGAGGAG
GCATTGGTCCCTTTGTATGCTGCGGACCTGACGCCTGATGTTGCCGTGAT
TGATCCTTCCTTGACCTCCACATTGCCCTCACAGGCAGAGCGTGCGATGG
CATTAAGTGCCGTGTCAGTTTGTTTTGATGCTTTGGCATGTTGGAGCGCG
AGGGCCACATTGGAAAAAAATGGGATGGCAGGCTTGATCATTACATGTGC
CACAGAGCTGGGCGCAGGGATGAGATTGGCTGGAGGCGGGAAACCTGGAG
ACAAGAAAGAGCAGAGGAGAAAAAGAATGCACCTCGCGCAGGGTAGTGTG
ACGGCAGGACAGTTGTTGGGGTTGGTAGAAGCGCCGCCTATACAGAGCTT
GGCACTATGCTTGGCACCGCTTTTCCCGCTGGCGTCTTATTCTCAACTTA
CAGCCGTGCTTTTAAGATCATACCTGGCCGTATTGGCCGATAGGCAACAG
CAGGGGGATATGGGTAGGTTGGATGTGTTTAACGAGGCATTTTTACGGCA
AATGGGAGGGGTGATATGTGGTAGTGACAGTGGTGGGGGTGCGGTGGGGT
TGCTAGAGCTAGCTGAGTGGGTATGGGGGCAAAGTCAACAGGCAGGGATC
CGGCGCCTAGCGGATTATCGGGTGCCGGACAAGGAGGAGAAGACGGGGCA
AGCACTGACGGCGCAAGTCACTAGTGTGCTAGAGTTATTTCAGGTGGAGG
GAGGGGTGGCTTTGGAGACAGATGTAGTGAGGGACGTGATCGATGTGTCC
TTGGGGTCGTGA
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Synonyms
Publications