jgi.p|Nanoce1779_2|401679, mRNA_3254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|401679
Unique NamemRNA_3254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length489
Alignment locationscaffold_7:1019607..1020095 -

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Properties
Property NameValue
TranscriptId401765
TrackFilteredModels2
ProteinId401679
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1019607..1020095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401679gene_3254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401679mRNA_3254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3254CDS_3254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3254 ID=mRNA_3254|Name=jgi.p|Nanoce1779_2|401679|organism=Nannochloropsis oceanica|type=mRNA|length=489bp
TATCTCTCTTTAGTGTTGGCATCTACAGCACGTCCTATGGTTCTCCCTGT
TTGTCGTTTGCCTATCCTTCCATGACTCTCCGAATGTGTTGCTGTCGCTG
TTGCGACGGCTGTTGCTGCTGTTGATGCTCATGATGATGGTGTGACAATT
ATGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTG
CTTGTGCTGCTTTTTCCCTTTCGACCAATTCTTGTGGTTATTTGCAGGCA
TATTTTGTCACCAACTTTTAATGGTGTTGTCATTTTCCTCTGTGTCAATC
CTCTTCTCTGCCGTTTCGCGGAGAAGCATTATCCACAACTATCCTAGCCT
TTCCTTCTTTTGGTCGCCCTCTCTCCTTTCTCTCTTTTCCTTTTCCCGTC
CTGGCCTTCTATAGACACATGACGGATATAGAAATCGATCCCTTGCTGAA
CATCGCTACCTAGTTCCAACATACAAAAGCACGTAGACA
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protein sequence of jgi.p|Nanoce1779_2|401679

>mRNA_3254-protein ID=mRNA_3254-protein|Name=jgi.p|Nanoce1779_2|401679|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MMLLLLLLLLLLLLLLCLCCFFPFDQFLWLFAGIFCHQLLMVLSFSSVSI
LFSAVSRRSIIHNYPSLSFFWSPSLLSLFSFSRPGLL*
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mRNA from alignment at scaffold_7:1019607..1020095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3254 ID=mRNA_3254|Name=jgi.p|Nanoce1779_2|401679|organism=Nannochloropsis oceanica|type=mRNA|length=489bp|location=Sequence derived from alignment at scaffold_7:1019607..1020095- (Nannochloropsis oceanica)
TATCTCTCTTTAGTGTTGGCATCTACAGCACGTCCTATGGTTCTCCCTGT
TTGTCGTTTGCCTATCCTTCCATGACTCTCCGAATGTGTTGCTGTCGCTG
TTGCGACGGCTGTTGCTGCTGTTGATGCTCATGATGATGGTGTGACAATT
ATGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTG
CTTGTGCTGCTTTTTCCCTTTCGACCAATTCTTGTGGTTATTTGCAGGCA
TATTTTGTCACCAACTTTTAATGGTGTTGTCATTTTCCTCTGTGTCAATC
CTCTTCTCTGCCGTTTCGCGGAGAAGCATTATCCACAACTATCCTAGCCT
TTCCTTCTTTTGGTCGCCCTCTCTCCTTTCTCTCTTTTCCTTTTCCCGTC
CTGGCCTTCTATAGACACATGACGGATATAGAAATCGATCCCTTGCTGAA
CATCGCTACCTAGTTCCAACATACAAAAGCACGTAGACA
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Coding sequence (CDS) from alignment at scaffold_7:1019607..1020095-

>mRNA_3254 ID=mRNA_3254|Name=jgi.p|Nanoce1779_2|401679|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_7:1019607..1020095- (Nannochloropsis oceanica)
ATGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTG
CTTGTGCTGCTTTTTCCCTTTCGACCAATTCTTGTGGTTATTTGCAGGCA
TATTTTGTCACCAACTTTTAATGGTGTTGTCATTTTCCTCTGTGTCAATC
CTCTTCTCTGCCGTTTCGCGGAGAAGCATTATCCACAACTATCCTAGCCT
TTCCTTCTTTTGGTCGCCCTCTCTCCTTTCTCTCTTTTCCTTTTCCCGTC
CTGGCCTTCTATAG
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Synonyms
Publications