jgi.p|Nanoce1779_2|585079, mRNA_3253 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585079
Unique NamemRNA_3253
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_7:1018688..1019941 +

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Properties
Property NameValue
TranscriptId585165
TrackFilteredModels2
ProteinId585079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1018688..1019941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585079gene_3253Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585079mRNA_3253-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3253CDS_3253Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3253 ID=mRNA_3253|Name=jgi.p|Nanoce1779_2|585079|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
CAACAGCACAGGCAGGCTCACTCGAGCGGGAAAAGGAGGTGCACAGCTAT
GGAAGAAACGGGTGGCTACGAAATGGGCGGAGGCGGAGGAGGTGGCGCCG
GAGGGGGCGGGGGAGGGGATGAGGTCAGGGAGCAGGACCGATACTTGCCC
ATAGCCAACATCAGTCGAATCATGAAGAAGTCTCTGCCCGCCAATGCCAA
GATCGCCAAGGACGCCAAGGAAACTGTACAAGAATGTGTTTCAGAATTCA
TCTCCTTCATCACGTCGGAAGCCAGTGACAAATGTCAACAAGAGAAACGC
AAGACTATCAACGGCGACGACCTTCTTTGGGCCATGAGCACCCTTGGCTT
TGATAAATACGTCGAGCCCCTTAAGCTCTACCTGGTGAAGTATCGTGAAT
CCGTCAAAGGTGGCGAAAAATCAGATGGAGGGAAAAAAGGCAAGGCTGGA
GGGGAGGAGGCGAGCGCGTCGGTTACCACGGGCAGCAGTGCAGCGGCGCC
TGTCACCGCGAGTGCTTCAGGTAGTGGTGGAGGAGGAGCGGGCATGGTGA
TGAGCGGGTCAGCATCGGAACAAGCAACAGTGCAGCAACAGCAACAGCAA
CAACACGCAGCTTACCAACTGCCGCCTGTAGGGCAAGAGCAGCAGCCCGC
TCCGTCTTCGGGGCCTTAAGGGTGTTAAATTTTTGTATGTTTGTTGGTGT
TTGACTGCTCGTGTGCAGATGAGAGTAAGGAGAGAGGACAAGAGTGTCTA
CGTGCTTTTGTATGTTGGAACTAGGTAGCGATGTTCAGCAAGGGATCGAT
TTCTATATCCGTCATGTGTCTATAGAAGGCCAGGACGGGAAAAGGAAAAG
AGAGAAAGGAGAGAGGGCGACCAAAAGAAGGAAAGGCTAGGATAGTTGTG
GATAATGCTTCTCCGCGAAACGGCAGAGAAGAGGATTGACACAGAGGAAA
ATGACAACACCATTAAAAGTTGGTGACAAAATATGCCTGCAAATAACCAC
AAGAATTGGTCGAAAGGGAAAAAGCAGCACAAGCACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|585079

>mRNA_3253-protein ID=mRNA_3253-protein|Name=jgi.p|Nanoce1779_2|585079|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEETGGYEMGGGGGGGAGGGGGGDEVREQDRYLPIANISRIMKKSLPANA
KIAKDAKETVQECVSEFISFITSEASDKCQQEKRKTINGDDLLWAMSTLG
FDKYVEPLKLYLVKYRESVKGGEKSDGGKKGKAGGEEASASVTTGSSAAA
PVTASASGSGGGGAGMVMSGSASEQATVQQQQQQQHAAYQLPPVGQEQQP
APSSGP*
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mRNA from alignment at scaffold_7:1018688..1019941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3253 ID=mRNA_3253|Name=jgi.p|Nanoce1779_2|585079|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at scaffold_7:1018688..1019941+ (Nannochloropsis oceanica)
CAACAGCACAGGCAGGCTCACTCGAGCGGGAAAAGGAGGTGCACAGCTAT
GGAAGAAACGGGTGGCTACGAAATGGGCGGAGGCGGAGGAGGTGGCGCCG
GAGGGGGCGGGGGAGGGGATGAGGTCAGGGAGCAGGACCGATACTTGCCC
ATAGCCAACATCAGTCGAATCATGAAGAAGTCTCTGGTGAGTGCTTTACG
TTGCGGGTAGTGAGTGCTCATCTTTGTTGCAGTTTTTTAAGCGGAGTGGA
CCGAGAATGAAGAGCGTGCGCTTGTATTTTTGGATCTTGTCCCCTCGTTA
CAATCCCCCGTATCTCCCCATCTCACACGCTTTTGCTTCCTTCCATGCCC
CTTCTCCACAGCCCGCCAATGCCAAGATCGCCAAGGACGCCAAGGAAACT
GTACAAGAATGTGTTTCAGAATTCATCTCCTTCATCACGTCGGAAGCCAG
TGACAAATGTCAACAAGAGAAACGCAAGACTATCAACGGCGACGACCTTC
TTTGGGCCATGAGCACCCTTGGCTTTGATAAATACGTCGAGCCCCTTAAG
CTCTACCTGGTGAAGTATCGTGAATCCGTCAAAGGTGGCGAAAAATCAGA
TGGAGGGAAAAAAGGCAAGGCTGGAGGGGAGGAGGCGAGCGCGTCGGTTA
CCACGGGCAGCAGTGCAGCGGCGCCTGTCACCGCGAGTGCTTCAGGTAGT
GGTGGAGGAGGAGCGGGCATGGTGATGAGCGGGTCAGCATCGGAACAAGC
AACAGTGCAGCAACAGCAACAGCAACAACACGCAGCTTACCAACTGCCGC
CTGTAGGGCAAGAGCAGCAGCCCGCTCCGTCTTCGGGGCCTTAAGGGTGT
TAAATTTTTGTATGTTTGTTGGTGTTTGACTGCTCGTGTGCAGATGAGAG
TAAGGAGAGAGGACAAGAGTGTCTACGTGCTTTTGTATGTTGGAACTAGG
TAGCGATGTTCAGCAAGGGATCGATTTCTATATCCGTCATGTGTCTATAG
AAGGCCAGGACGGGAAAAGGAAAAGAGAGAAAGGAGAGAGGGCGACCAAA
AGAAGGAAAGGCTAGGATAGTTGTGGATAATGCTTCTCCGCGAAACGGCA
GAGAAGAGGATTGACACAGAGGAAAATGACAACACCATTAAAAGTTGGTG
ACAAAATATGCCTGCAAATAACCACAAGAATTGGTCGAAAGGGAAAAAGC
AGCACAAGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCA
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Coding sequence (CDS) from alignment at scaffold_7:1018688..1019941+

>mRNA_3253 ID=mRNA_3253|Name=jgi.p|Nanoce1779_2|585079|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_7:1018688..1019941+ (Nannochloropsis oceanica)
ATGGAAGAAACGGGTGGCTACGAAATGGGCGGAGGCGGAGGAGGTGGCGC
CGGAGGGGGCGGGGGAGGGGATGAGGTCAGGGAGCAGGACCGATACTTGC
CCATAGCCAACATCAGTCGAATCATGAAGAAGTCTCTGCCCGCCAATGCC
AAGATCGCCAAGGACGCCAAGGAAACTGTACAAGAATGTGTTTCAGAATT
CATCTCCTTCATCACGTCGGAAGCCAGTGACAAATGTCAACAAGAGAAAC
GCAAGACTATCAACGGCGACGACCTTCTTTGGGCCATGAGCACCCTTGGC
TTTGATAAATACGTCGAGCCCCTTAAGCTCTACCTGGTGAAGTATCGTGA
ATCCGTCAAAGGTGGCGAAAAATCAGATGGAGGGAAAAAAGGCAAGGCTG
GAGGGGAGGAGGCGAGCGCGTCGGTTACCACGGGCAGCAGTGCAGCGGCG
CCTGTCACCGCGAGTGCTTCAGGTAGTGGTGGAGGAGGAGCGGGCATGGT
GATGAGCGGGTCAGCATCGGAACAAGCAACAGTGCAGCAACAGCAACAGC
AACAACACGCAGCTTACCAACTGCCGCCTGTAGGGCAAGAGCAGCAGCCC
GCTCCGTCTTCGGGGCCTTAAATGGAAGAAACGGGTGGCTACGAAATGGG
CGGAGGCGGAGGAGGTGGCGCCGGAGGGGGCGGGGGAGGGGATGAGGTCA
GGGAGCAGGACCGATACTTGCCCATAGCCAACATCAGTCGAATCATGAAG
AAGTCTCTGCCCGCCAATGCCAAGATCGCCAAGGACGCCAAGGAAACTGT
ACAAGAATGTGTTTCAGAATTCATCTCCTTCATCACGTCGGAAGCCAGTG
ACAAATGTCAACAAGAGAAACGCAAGACTATCAACGGCGACGACCTTCTT
TGGGCCATGAGCACCCTTGGCTTTGATAAATACGTCGAGCCCCTTAAGCT
CTACCTGGTGAAGTATCGTGAATCCGTCAAAGGTGGCGAAAAATCAGATG
GAGGGAAAAAAGGCAAGGCTGGAGGGGAGGAGGCGAGCGCGTCGGTTACC
ACGGGCAGCAGTGCAGCGGCGCCTGTCACCGCGAGTGCTTCAGGTAGTGG
TGGAGGAGGAGCGGGCATGGTGATGAGCGGGTCAGCATCGGAACAAGCAA
CAGTGCAGCAACAGCAACAGCAACAACACGCAGCTTACCAACTGCCGCCT
GTAGGGCAAGAGCAGCAGCCCGCTCCGTCTTCGGGGCCTTAA
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Synonyms
Publications