jgi.p|Nanoce1779_2|585075, mRNA_3251 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585075
Unique Name	mRNA_3251
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3352
Alignment location	scaffold_7:1011136..1014487 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585161
Track	FilteredModels2
ProteinId	585075

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:1011136..1014487 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585075	gene_3251	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585075	mRNA_3251-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3251	CDS_3251	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:1011136..1014487-
coding sequence from alignment at scaffold_7:1011136..1014487-

mRNA sequence

>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Nanoce1779_2|585075|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp
TTTATTTCTTGCGTTCTACAGCGTACCTTCTCCATTCTCTTTCCACGAAC
ATTCTCTACAAAAATGACGACACTCCAGCAAGCTTCGCACACATCTACCA
ACCGACAAAGGTGATCTTCCTCCATTCTTACCCTGCCTCCCCTTTTTTCT
GTTGACACAAGTTTATGTTCTGAACTCCAAAGGTTGTGTAAGCACTGTCA
CATTTTCTCCTGCTCCTTTTTTTGCTCTTATCCTGGTTCCGCAGTGACGC
GAGAATACTTCCATCCTCCTCCGCCGTTCGGTAATTTCCCCCTTCATTTA
ATCATCTTCACGGGACGTATCCTCCCGGGTTGGTGCTCTGTTGTAGGGAG
GGCGAGAGATCGAGGTTGAGTCGGGCTGTCTCCAACAACCTCGCAAGCTT
TATAATCTCTCTCTTTTAATCCTCCTCGCAAACGCAGCGCAAGTAAGAAC
AGCTCTCGATAGACGGAAAGATTAAAAACGATTTTTCCTGTAGTAGTGCT
AAGTTGATGTAGATCATCGCCCGCAGCCACGCCTTACCTGTCCGAAGGTA
ACCCTTCTCAACGTGGTTGGCCAAAGAAGGAATATGGGCCAACCTCGGTG
TTTTATATACATATACAATACCTTCTTCTACTCCTTCCCTGCTCATGCTT
TTTGGGTCCCTCCTGCCATGATCTTTTTGCGTCCATGCACTCATCACTAC
ACCCATAGAGGACGATAGTTATCAGAAGAACAGGCGGCAGGAGAAGCGGC
GGCGGCAGCAGGAAAAGACTCACTCAAAAGTGTAAGAGCAAAAACACCAT
CATCACAGGCAGAGAGGGCAGGACCAGCGGTGGTTGGGGCGGTAGCACCA
TCCATCTCTTCTCAACATCTCGTCGCGATATGAGTAGCTTCGTCCAAGAG
TACGAGCAACATCGACCCTGCATCGTCGTGGAACTCCCCGAGCTGCGCAA
AACAAGCGGGGGCCTCTTCTCCGCTCGTGAGGTGATGACTTACGCCGTTT
GTGTCCAGGGTGGCAATTCCTTCGAGAGCCCGCGGCCCTTTCCCAAGCAC
GGGGTCCGACATCGCTATTCGGATTTTGAGGCACTTTCACGGGGACTGCA
ACGACGCTTTGGCACGGAGGGGATGTTAATCCCACCGTTGCCCCCAAAGG
GCCTGCGGAAAAAGCACGATGTCGACTTTATTAAGCAGCGAATGAATGGC
TTGCAGTTTTTCATGGAAGGCATCGCTGCTTCTCCCTTCTTATTCCATGA
CATACTCACGCAAAAATTTCTGAAGCGCACCACCACCGAAGGTGCGGGCT
CGATTGTGGCAATCCTGGATGAAGGAGACAACTCTGTCGGACAAATTATT
CCCTTGCCCTCCTCCTCCTCTTCTTCAAAGCCGCCGTCCTCCCCCCTCTC
TTCCGCCTCTATGGCTGCCATGCATAATCAGGGCTACATACAATGGACTG
AATTTCTGTCCTCTTTCGTTCTGCCACCCGACCCGGATGTGATGGTGGAA
AAGGTCCGCATTGAGCTCGATTCATGCGAGAAGGTACTGAGTGAGGTGAT
GGAGGGGGGCAAGGCATTGGCGGCTGGTTTTGGGCAGTACGCGCGGGGGT
TGCAAGCCTTTAGTTACTCTATGCATGTCCTGGCAGAAGGGGAGCGGAGG
GTGGAGGTTTTGAACAAAGTCGAGGTAACGGAGGGTAGGGAGGATAGTAG
TAGCGCCGAGCAAGAGAGCAGCAACGACAACGCTTCATCTCCACTGAGGG
CGCTCTACACCATACCCCTCCCCGAGCTCGCCTCCCACACCGCTGATCTC
TACGCAAACATCGTCCCTACTTTCCTGGCCGCCCCGGGACAAGCCTCCTT
CTTTTTCTCCCCCCTCATCGAGTACGAGCAAAGCCGCATCCAATCCCTCA
AAACTCTCCTCGCAGGTCGCAACGACTTACGCACCTCCATCCTCAAGCTC
CAAAAAAAGGTCGAAGGTCTCCGCCAGCCCTCCGCCTCCTCTGCCGATCG
CGAACTCTACGAAAGCCGCCTTGCTCAAGCAGAAGTCCACCTCTACAAAT
TCACCAAAGCCCTCCTCTGTTACACCCTCCCTGCAGTCGCGCAACAACGC
ACCTGGAACCTCAACCGAGCTTTGGCCAACCTCGCAGCGATTTCGACACC
AGCAGCCTCAGCATCGTTTGGTCAAACCATGGGTTATTTGAAAGTGTTAG
GATGGGATGCAGCGGAGGTCGTGGAGGAAGCCAATGAGAACGGGGTAGCC
TTAATGGTGCCACATATACCGGTCATAGCCTTGCCTCAAGCAGGAGAGGA
GAAGAATATGCAGCGGGAGGAGCGGCAGAAGGAAACGACAGTGCTGAAAC
AAAAAAGTCCTGCCGCAACAGCATCGGCGGCGGTGGTGGCGGCGCGCAAA
CCAGGTAGTTTTTTGTACGACAAGCCCTTACCTTCTCCTGTAGCGGTGGA
GAGTGCAGGTGGAGAGGAGGAGAGAAAGAGAGGTAGCGGTCTAAGCACCA
GCGACAGCGGCGGAGATGGTAATAGCATTACTACTACCTGGCCGATGACG
GACCCTATCGTGACAGTGGCTTCCTCATTGGGATCAGGCGACCGCAAGGG
AGCCAGTGGGAAAGCTCCCTGGGAAAGCGACGACGAGGTGGAGAACCCGT
TTGAGAAGGAGGAGGGGGTGTAAGCCAGTACGTCCAGGTTTTGAGTTTTT
TTTTCAGAAGCTAGATAAACATAAAATTTCTCCATGATTTGTACAGTCAA
GTCGCCGTACGAAGCGCAAGCAGAAAGAGAGCGAGAAATGAAGCCCGACA
GAGAAAAAGTAATGGAGTGTGGTTGAGGGAGTGTCTGAATATGCGTGTGT
GATATAGGGCACGGCGTCAGAAAGAAAGGCGATGGGTTTAAGAAGCGGAT
GGATTGAGTACCTGATGCAGGTGCATGATCGTCTTCCAGTTATGCATGTA
TTAGAAAAAAATTAAGTGAAATGCAAATGTATGATAGGGGACACACACAA
GGAAGTCGTTATGTCTTTTTTCACCAGAGAATTGTGTGGTTTCTCTCATG
GTACGTACGGATTACTTAGTGAGCAGGAAACAGGACAAGAAGCAAGAAGA
GGTTTAAAATTCAAGATTGAATTCAGGAGGGAAAGATGCAGGAGAAAAGC
TGCATGGTAAAGAGAGTGTATATTCTATGGCTGTGTGTCAGGGTCGTGCG
TAAGCGAGTGTTTACTTCTATCCACTCGCACACACTGATAATTTACAGCA
TTTGGTGCGACAAACTAATAGCGGACAAGATGTGACGATAACAAATCCTC
ACATTTCATTTATATAGCACGGAATGAACAAGAGAGACTACAACACTCAA
AC

protein sequence of jgi.p|Nanoce1779_2|585075

>mRNA_3251-protein ID=mRNA_3251-protein|Name=jgi.p|Nanoce1779_2|585075|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MSSFVQEYEQHRPCIVVELPELRKTSGGLFSAREVMTYAVCVQGGNSFES
PRPFPKHGVRHRYSDFEALSRGLQRRFGTEGMLIPPLPPKGLRKKHDVDF
IKQRMNGLQFFMEGIAASPFLFHDILTQKFLKRTTTEGAGSIVAILDEGD
NSVGQIIPLPSSSSSSKPPSSPLSSASMAAMHNQGYIQWTEFLSSFVLPP
DPDVMVEKVRIELDSCEKVLSEVMEGGKALAAGFGQYARGLQAFSYSMHV
LAEGERRVEVLNKVEVTEGREDSSSAEQESSNDNASSPLRALYTIPLPEL
ASHTADLYANIVPTFLAAPGQASFFFSPLIEYEQSRIQSLKTLLAGRNDL
RTSILKLQKKVEGLRQPSASSADRELYESRLAQAEVHLYKFTKALLCYTL
PAVAQQRTWNLNRALANLAAISTPAASASFGQTMGYLKVLGWDAAEVVEE
ANENGVALMVPHIPVIALPQAGEEKNMQREERQKETTVLKQKSPAATASA
AVVAARKPGSFLYDKPLPSPVAVESAGGEEERKRGSGLSTSDSGGDGNSI
TTTWPMTDPIVTVASSLGSGDRKGASGKAPWESDDEVENPFEKEEGV*

mRNA from alignment at scaffold_7:1011136..1014487-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Nanoce1779_2|585075|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp|location=Sequence derived from alignment at scaffold_7:1011136..1014487- (Nannochloropsis oceanica)
TTTATTTCTTGCGTTCTACAGCGTACCTTCTCCATTCTCTTTCCACGAAC
ATTCTCTACAAAAATGACGACACTCCAGCAAGCTTCGCACACATCTACCA
ACCGACAAAGGTGATCTTCCTCCATTCTTACCCTGCCTCCCCTTTTTTCT
GTTGACACAAGTTTATGTTCTGAACTCCAAAGGTTGTGTAAGCACTGTCA
CATTTTCTCCTGCTCCTTTTTTTGCTCTTATCCTGGTTCCGCAGTGACGC
GAGAATACTTCCATCCTCCTCCGCCGTTCGGTAATTTCCCCCTTCATTTA
ATCATCTTCACGGGACGTATCCTCCCGGGTTGGTGCTCTGTTGTAGGGAG
GGCGAGAGATCGAGGTTGAGTCGGGCTGTCTCCAACAACCTCGCAAGCTT
TATAATCTCTCTCTTTTAATCCTCCTCGCAAACGCAGCGCAAGTAAGAAC
AGCTCTCGATAGACGGAAAGATTAAAAACGATTTTTCCTGTAGTAGTGCT
AAGTTGATGTAGATCATCGCCCGCAGCCACGCCTTACCTGTCCGAAGGTA
ACCCTTCTCAACGTGGTTGGCCAAAGAAGGAATATGGGCCAACCTCGGTG
TTTTATATACATATACAATACCTTCTTCTACTCCTTCCCTGCTCATGCTT
TTTGGGTCCCTCCTGCCATGATCTTTTTGCGTCCATGCACTCATCACTAC
ACCCATAGAGGACGATAGTTATCAGAAGAACAGGCGGCAGGAGAAGCGGC
GGCGGCAGCAGGAAAAGACTCACTCAAAAGTGTAAGAGCAAAAACACCAT
CATCACAGGCAGAGAGGGCAGGACCAGCGGTGGTTGGGGCGGTAGCACCA
TCCATCTCTTCTCAACATCTCGTCGCGATATGAGTAGCTTCGTCCAAGAG
TACGAGCAACATCGACCCTGCATCGTCGTGGAACTCCCCGAGCTGCGCAA
AACAAGCGGGGGCCTCTTCTCCGCTCGTGAGGTGATGACTTACGCCGTTT
GTGTCCAGGGTGGCAATTCCTTCGAGAGCCCGCGGCCCTTTCCCAAGCAC
GGGGTCCGACATCGCTATTCGGATTTTGAGGCACTTTCACGGGGACTGCA
ACGACGCTTTGGCACGGAGGGGATGTTAATCCCACCGTTGCCCCCAAAGG
GCCTGCGGAAAAAGCACGATGTCGACTTTATTAAGCAGCGAATGAATGGC
TTGCAGTTTTTCATGGAAGGCATCGCTGCTTCTCCCTTCTTATTCCATGA
CATACTCACGCAAAAATTTCTGAAGCGCACCACCACCGAAGGTGCGGGCT
CGATTGTGGCAATCCTGGATGAAGGAGACAACTCTGTCGGACAAATTATT
CCCTTGCCCTCCTCCTCCTCTTCTTCAAAGCCGCCGTCCTCCCCCCTCTC
TTCCGCCTCTATGGCTGCCATGCATAATCAGGGCTACATACAATGGACTG
AATTTCTGTCCTCTTTCGTTCTGCCACCCGACCCGGATGTGATGGTGGAA
AAGGTCCGCATTGAGCTCGATTCATGCGAGAAGGTACTGAGTGAGGTGAT
GGAGGGGGGCAAGGCATTGGCGGCTGGTTTTGGGCAGTACGCGCGGGGGT
TGCAAGCCTTTAGTTACTCTATGCATGTCCTGGCAGAAGGGGAGCGGAGG
GTGGAGGTTTTGAACAAAGTCGAGGTAACGGAGGGTAGGGAGGATAGTAG
TAGCGCCGAGCAAGAGAGCAGCAACGACAACGCTTCATCTCCACTGAGGG
CGCTCTACACCATACCCCTCCCCGAGCTCGCCTCCCACACCGCTGATCTC
TACGCAAACATCGTCCCTACTTTCCTGGCCGCCCCGGGACAAGCCTCCTT
CTTTTTCTCCCCCCTCATCGAGTACGAGCAAAGCCGCATCCAATCCCTCA
AAACTCTCCTCGCAGGTCGCAACGACTTACGCACCTCCATCCTCAAGCTC
CAAAAAAAGGTCGAAGGTCTCCGCCAGCCCTCCGCCTCCTCTGCCGATCG
CGAACTCTACGAAAGCCGCCTTGCTCAAGCAGAAGTCCACCTCTACAAAT
TCACCAAAGCCCTCCTCTGTTACACCCTCCCTGCAGTCGCGCAACAACGC
ACCTGGAACCTCAACCGAGCTTTGGCCAACCTCGCAGCGATTTCGACACC
AGCAGCCTCAGCATCGTTTGGTCAAACCATGGGTTATTTGAAAGTGTTAG
GATGGGATGCAGCGGAGGTCGTGGAGGAAGCCAATGAGAACGGGGTAGCC
TTAATGGTGCCACATATACCGGTCATAGCCTTGCCTCAAGCAGGAGAGGA
GAAGAATATGCAGCGGGAGGAGCGGCAGAAGGAAACGACAGTGCTGAAAC
AAAAAAGTCCTGCCGCAACAGCATCGGCGGCGGTGGTGGCGGCGCGCAAA
CCAGGTAGTTTTTTGTACGACAAGCCCTTACCTTCTCCTGTAGCGGTGGA
GAGTGCAGGTGGAGAGGAGGAGAGAAAGAGAGGTAGCGGTCTAAGCACCA
GCGACAGCGGCGGAGATGGTAATAGCATTACTACTACCTGGCCGATGACG
GACCCTATCGTGACAGTGGCTTCCTCATTGGGATCAGGCGACCGCAAGGG
AGCCAGTGGGAAAGCTCCCTGGGAAAGCGACGACGAGGTGGAGAACCCGT
TTGAGAAGGAGGAGGGGGTGTAAGCCAGTACGTCCAGGTTTTGAGTTTTT
TTTTCAGAAGCTAGATAAACATAAAATTTCTCCATGATTTGTACAGTCAA
GTCGCCGTACGAAGCGCAAGCAGAAAGAGAGCGAGAAATGAAGCCCGACA
GAGAAAAAGTAATGGAGTGTGGTTGAGGGAGTGTCTGAATATGCGTGTGT
GATATAGGGCACGGCGTCAGAAAGAAAGGCGATGGGTTTAAGAAGCGGAT
GGATTGAGTACCTGATGCAGGTGCATGATCGTCTTCCAGTTATGCATGTA
TTAGAAAAAAATTAAGTGAAATGCAAATGTATGATAGGGGACACACACAA
GGAAGTCGTTATGTCTTTTTTCACCAGAGAATTGTGTGGTTTCTCTCATG
GTACGTACGGATTACTTAGTGAGCAGGAAACAGGACAAGAAGCAAGAAGA
GGTTTAAAATTCAAGATTGAATTCAGGAGGGAAAGATGCAGGAGAAAAGC
TGCATGGTAAAGAGAGTGTATATTCTATGGCTGTGTGTCAGGGTCGTGCG
TAAGCGAGTGTTTACTTCTATCCACTCGCACACACTGATAATTTACAGCA
TTTGGTGCGACAAACTAATAGCGGACAAGATGTGACGATAACAAATCCTC
ACATTTCATTTATATAGCACGGAATGAACAAGAGAGACTACAACACTCAA
AC

Coding sequence (CDS) from alignment at scaffold_7:1011136..1014487-

>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Nanoce1779_2|585075|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_7:1011136..1014487- (Nannochloropsis oceanica)
ATGAGTAGCTTCGTCCAAGAGTACGAGCAACATCGACCCTGCATCGTCGT
GGAACTCCCCGAGCTGCGCAAAACAAGCGGGGGCCTCTTCTCCGCTCGTG
AGGTGATGACTTACGCCGTTTGTGTCCAGGGTGGCAATTCCTTCGAGAGC
CCGCGGCCCTTTCCCAAGCACGGGGTCCGACATCGCTATTCGGATTTTGA
GGCACTTTCACGGGGACTGCAACGACGCTTTGGCACGGAGGGGATGTTAA
TCCCACCGTTGCCCCCAAAGGGCCTGCGGAAAAAGCACGATGTCGACTTT
ATTAAGCAGCGAATGAATGGCTTGCAGTTTTTCATGGAAGGCATCGCTGC
TTCTCCCTTCTTATTCCATGACATACTCACGCAAAAATTTCTGAAGCGCA
CCACCACCGAAGGTGCGGGCTCGATTGTGGCAATCCTGGATGAAGGAGAC
AACTCTGTCGGACAAATTATTCCCTTGCCCTCCTCCTCCTCTTCTTCAAA
GCCGCCGTCCTCCCCCCTCTCTTCCGCCTCTATGGCTGCCATGCATAATC
AGGGCTACATACAATGGACTGAATTTCTGTCCTCTTTCGTTCTGCCACCC
GACCCGGATGTGATGGTGGAAAAGGTCCGCATTGAGCTCGATTCATGCGA
GAAGGTACTGAGTGAGGTGATGGAGGGGGGCAAGGCATTGGCGGCTGGTT
TTGGGCAGTACGCGCGGGGGTTGCAAGCCTTTAGTTACTCTATGCATGTC
CTGGCAGAAGGGGAGCGGAGGGTGGAGGTTTTGAACAAAGTCGAGGTAAC
GGAGGGTAGGGAGGATAGTAGTAGCGCCGAGCAAGAGAGCAGCAACGACA
ACGCTTCATCTCCACTGAGGGCGCTCTACACCATACCCCTCCCCGAGCTC
GCCTCCCACACCGCTGATCTCTACGCAAACATCGTCCCTACTTTCCTGGC
CGCCCCGGGACAAGCCTCCTTCTTTTTCTCCCCCCTCATCGAGTACGAGC
AAAGCCGCATCCAATCCCTCAAAACTCTCCTCGCAGGTCGCAACGACTTA
CGCACCTCCATCCTCAAGCTCCAAAAAAAGGTCGAAGGTCTCCGCCAGCC
CTCCGCCTCCTCTGCCGATCGCGAACTCTACGAAAGCCGCCTTGCTCAAG
CAGAAGTCCACCTCTACAAATTCACCAAAGCCCTCCTCTGTTACACCCTC
CCTGCAGTCGCGCAACAACGCACCTGGAACCTCAACCGAGCTTTGGCCAA
CCTCGCAGCGATTTCGACACCAGCAGCCTCAGCATCGTTTGGTCAAACCA
TGGGTTATTTGAAAGTGTTAGGATGGGATGCAGCGGAGGTCGTGGAGGAA
GCCAATGAGAACGGGGTAGCCTTAATGGTGCCACATATACCGGTCATAGC
CTTGCCTCAAGCAGGAGAGGAGAAGAATATGCAGCGGGAGGAGCGGCAGA
AGGAAACGACAGTGCTGAAACAAAAAAGTCCTGCCGCAACAGCATCGGCG
GCGGTGGTGGCGGCGCGCAAACCAGGTAGTTTTTTGTACGACAAGCCCTT
ACCTTCTCCTGTAGCGGTGGAGAGTGCAGGTGGAGAGGAGGAGAGAAAGA
GAGGTAGCGGTCTAAGCACCAGCGACAGCGGCGGAGATGGTAATAGCATT
ACTACTACCTGGCCGATGACGGACCCTATCGTGACAGTGGCTTCCTCATT
GGGATCAGGCGACCGCAAGGGAGCCAGTGGGAAAGCTCCCTGGGAAAGCG
ACGACGAGGTGGAGAACCCGTTTGAGAAGGAGGAGGGGGTGTAA

Synonyms

Publications