jgi.p|Nanoce1779_2|585073, mRNA_3250 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585073
Unique NamemRNA_3250
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1360
Alignment locationscaffold_7:1009167..1010526 -

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Properties
Property NameValue
TranscriptId585159
TrackFilteredModels2
ProteinId585073
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1009167..1010526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585073gene_3250Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585073mRNA_3250-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3250CDS_3250Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3250 ID=mRNA_3250|Name=jgi.p|Nanoce1779_2|585073|organism=Nannochloropsis oceanica|type=mRNA|length=1360bp
AGAAACACAGGACAAGTCCGGCAATTCAATCATGCCCTTCAGCCCCGGCA
CCCAACACCGATTTCTAAGACCAACGACAAATTCAGCACCTTCCCCTTCA
TCGCCCCGAGGCCCCTTCCTCCTGCTCCTCTTGGCCTGCCTCCAGTTTCT
ACTCTCTTACTCCTCCGTTGGAGTCGTTGCCTTCATATTAACGACACCTC
GAGGCGGCTTCGCAGCGACCGATAAGTCCTCTTGCACCATGTCTTGCACC
ACTCCGTCTAGGCATCGCAGCACCACGACCATGCATGCTAGTACAGGAGA
GAATGACCTGTTGGTGGTGGGGATGGGCACTCTAGGCGTCTTCCTCGGGC
AAGCCTGGCGTGACGCGCTTGGACCGGAGGCCACAATCTACGGCGAGACA
AGCACTGAAAGCCGCCATGCCGATTTGCGGGCTATGGGTGTTGAACCAAG
TGTGCGGAGCGAGCGTGCAACAAAGCTGGCTCAACATGGGATGGCGAAGT
ATCCGCATGTGGTATTTTGTGTCCCGCCTTCGAAAAACGAGGATTATGTG
GGAGAGGTGCAAGGAGCCTTAGAACTATGGTCAGGCAAAGGAGGTTTCGT
CTTCACTTCTTCCGGCGGGGTGTTCGCGGAGGATAATGGAGGGACAGTGG
ATGAAACGGCCCCTCTGTCAACCAACCCGCGGATGAGCAAAATCCTGGAG
GCGGAGCGTGTGGTAGCAGCGGCTGGAGGGACGGTGATGCGTCTGGCAGG
GCTCTACACCCAGACAAGGGGGCCGCATACATTCTGGTTGAGCAAGGGAG
AAGTGGGGGCAACTGAGCAGGGGATTATCAATTTGTTGCACTATGAAGAT
GCTGCCAGGGCGACGATGGCGGGCTTGCTTCATCACCACACCATACGAGT
AGACAATAACGGCCAAAACAACAGCAAGAATGACGGACGGATTCTCCTCA
TTTCCGACGATAACCCTTTGACACGCAAGCAAATCTGCGAGGCGGCTGTG
GCTTCTCCACTGTTTGAGGGTCAATACCAGATGCCTATTTTCAAGCCGTC
GGAGGAGGGGAAACGGAGCTTGGGCAAAGTGTATGACACGTCGAAATCAC
GGGCGGCGTTGGGGGGGTGGGTGCCGAGGTATCCTTCGTTTAAAACGTTT
ATGAAAGCTTTAAACCCGCCGTCTGCTGTGTCCACAGCGAGCAACAGTAG
TGGTAGTGACTCTGTGAAACGGTGAGAAGGGAGAAGGCTGCGTTTTGTTG
TGAAGATATTATGTTGTTTTGGTGTGTGTGTGCGCGGAAGCGGAGAAAGG
GGAGTTTCTTACTTGCTTGAAGACGGAATAGAAAATCAGATATTACAATG
ATAGCGTCAC
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protein sequence of jgi.p|Nanoce1779_2|585073

>mRNA_3250-protein ID=mRNA_3250-protein|Name=jgi.p|Nanoce1779_2|585073|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MPFSPGTQHRFLRPTTNSAPSPSSPRGPFLLLLLACLQFLLSYSSVGVVA
FILTTPRGGFAATDKSSCTMSCTTPSRHRSTTTMHASTGENDLLVVGMGT
LGVFLGQAWRDALGPEATIYGETSTESRHADLRAMGVEPSVRSERATKLA
QHGMAKYPHVVFCVPPSKNEDYVGEVQGALELWSGKGGFVFTSSGGVFAE
DNGGTVDETAPLSTNPRMSKILEAERVVAAAGGTVMRLAGLYTQTRGPHT
FWLSKGEVGATEQGIINLLHYEDAARATMAGLLHHHTIRVDNNGQNNSKN
DGRILLISDDNPLTRKQICEAAVASPLFEGQYQMPIFKPSEEGKRSLGKV
YDTSKSRAALGGWVPRYPSFKTFMKALNPPSAVSTASNSSGSDSVKR*
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mRNA from alignment at scaffold_7:1009167..1010526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3250 ID=mRNA_3250|Name=jgi.p|Nanoce1779_2|585073|organism=Nannochloropsis oceanica|type=mRNA|length=1360bp|location=Sequence derived from alignment at scaffold_7:1009167..1010526- (Nannochloropsis oceanica)
AGAAACACAGGACAAGTCCGGCAATTCAATCATGCCCTTCAGCCCCGGCA
CCCAACACCGATTTCTAAGACCAACGACAAATTCAGCACCTTCCCCTTCA
TCGCCCCGAGGCCCCTTCCTCCTGCTCCTCTTGGCCTGCCTCCAGTTTCT
ACTCTCTTACTCCTCCGTTGGAGTCGTTGCCTTCATATTAACGACACCTC
GAGGCGGCTTCGCAGCGACCGATAAGTCCTCTTGCACCATGTCTTGCACC
ACTCCGTCTAGGCATCGCAGCACCACGACCATGCATGCTAGTACAGGAGA
GAATGACCTGTTGGTGGTGGGGATGGGCACTCTAGGCGTCTTCCTCGGGC
AAGCCTGGCGTGACGCGCTTGGACCGGAGGCCACAATCTACGGCGAGACA
AGCACTGAAAGCCGCCATGCCGATTTGCGGGCTATGGGTGTTGAACCAAG
TGTGCGGAGCGAGCGTGCAACAAAGCTGGCTCAACATGGGATGGCGAAGT
ATCCGCATGTGGTATTTTGTGTCCCGCCTTCGAAAAACGAGGATTATGTG
GGAGAGGTGCAAGGAGCCTTAGAACTATGGTCAGGCAAAGGAGGTTTCGT
CTTCACTTCTTCCGGCGGGGTGTTCGCGGAGGATAATGGAGGGACAGTGG
ATGAAACGGCCCCTCTGTCAACCAACCCGCGGATGAGCAAAATCCTGGAG
GCGGAGCGTGTGGTAGCAGCGGCTGGAGGGACGGTGATGCGTCTGGCAGG
GCTCTACACCCAGACAAGGGGGCCGCATACATTCTGGTTGAGCAAGGGAG
AAGTGGGGGCAACTGAGCAGGGGATTATCAATTTGTTGCACTATGAAGAT
GCTGCCAGGGCGACGATGGCGGGCTTGCTTCATCACCACACCATACGAGT
AGACAATAACGGCCAAAACAACAGCAAGAATGACGGACGGATTCTCCTCA
TTTCCGACGATAACCCTTTGACACGCAAGCAAATCTGCGAGGCGGCTGTG
GCTTCTCCACTGTTTGAGGGTCAATACCAGATGCCTATTTTCAAGCCGTC
GGAGGAGGGGAAACGGAGCTTGGGCAAAGTGTATGACACGTCGAAATCAC
GGGCGGCGTTGGGGGGGTGGGTGCCGAGGTATCCTTCGTTTAAAACGTTT
ATGAAAGCTTTAAACCCGCCGTCTGCTGTGTCCACAGCGAGCAACAGTAG
TGGTAGTGACTCTGTGAAACGGTGAGAAGGGAGAAGGCTGCGTTTTGTTG
TGAAGATATTATGTTGTTTTGGTGTGTGTGTGCGCGGAAGCGGAGAAAGG
GGAGTTTCTTACTTGCTTGAAGACGGAATAGAAAATCAGATATTACAATG
ATAGCGTCAC
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Coding sequence (CDS) from alignment at scaffold_7:1009167..1010526-

>mRNA_3250 ID=mRNA_3250|Name=jgi.p|Nanoce1779_2|585073|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_7:1009167..1010526- (Nannochloropsis oceanica)
ATGCCCTTCAGCCCCGGCACCCAACACCGATTTCTAAGACCAACGACAAA
TTCAGCACCTTCCCCTTCATCGCCCCGAGGCCCCTTCCTCCTGCTCCTCT
TGGCCTGCCTCCAGTTTCTACTCTCTTACTCCTCCGTTGGAGTCGTTGCC
TTCATATTAACGACACCTCGAGGCGGCTTCGCAGCGACCGATAAGTCCTC
TTGCACCATGTCTTGCACCACTCCGTCTAGGCATCGCAGCACCACGACCA
TGCATGCTAGTACAGGAGAGAATGACCTGTTGGTGGTGGGGATGGGCACT
CTAGGCGTCTTCCTCGGGCAAGCCTGGCGTGACGCGCTTGGACCGGAGGC
CACAATCTACGGCGAGACAAGCACTGAAAGCCGCCATGCCGATTTGCGGG
CTATGGGTGTTGAACCAAGTGTGCGGAGCGAGCGTGCAACAAAGCTGGCT
CAACATGGGATGGCGAAGTATCCGCATGTGGTATTTTGTGTCCCGCCTTC
GAAAAACGAGGATTATGTGGGAGAGGTGCAAGGAGCCTTAGAACTATGGT
CAGGCAAAGGAGGTTTCGTCTTCACTTCTTCCGGCGGGGTGTTCGCGGAG
GATAATGGAGGGACAGTGGATGAAACGGCCCCTCTGTCAACCAACCCGCG
GATGAGCAAAATCCTGGAGGCGGAGCGTGTGGTAGCAGCGGCTGGAGGGA
CGGTGATGCGTCTGGCAGGGCTCTACACCCAGACAAGGGGGCCGCATACA
TTCTGGTTGAGCAAGGGAGAAGTGGGGGCAACTGAGCAGGGGATTATCAA
TTTGTTGCACTATGAAGATGCTGCCAGGGCGACGATGGCGGGCTTGCTTC
ATCACCACACCATACGAGTAGACAATAACGGCCAAAACAACAGCAAGAAT
GACGGACGGATTCTCCTCATTTCCGACGATAACCCTTTGACACGCAAGCA
AATCTGCGAGGCGGCTGTGGCTTCTCCACTGTTTGAGGGTCAATACCAGA
TGCCTATTTTCAAGCCGTCGGAGGAGGGGAAACGGAGCTTGGGCAAAGTG
TATGACACGTCGAAATCACGGGCGGCGTTGGGGGGGTGGGTGCCGAGGTA
TCCTTCGTTTAAAACGTTTATGAAAGCTTTAAACCCGCCGTCTGCTGTGT
CCACAGCGAGCAACAGTAGTGGTAGTGACTCTGTGAAACGGTGA
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Synonyms
Publications