Properties
| Property Name | Value |
|---|
| TranscriptId | 585149 |
| Track | FilteredModels2 |
| ProteinId | 585063 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:999034..1000603 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Nanoce1779_2|585063|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
CAGCACCTTACACGATTCAGATGATGGTCTCTCACACCGCCGTCAATGCG
GCCTTGCTGATTGTCGCCTCGCTGGTTGCCGTCGTGTCTGCCGTCGAAGA
TGACATAATGACTTTCGGCAGCGTCGTCAAGTTCCAACACAGCTCGAGCA
AGCACTTTCTGCACAGCCACCAAATCAATTGGGGCTCCGGTAGCGGCCAA
CAATCTGTGACGGCCCATAGGTGGGAAGACGAGCAAGGCGGGATGTGGGT
GATCAAGGAAAGCAACTCGGGAAGCTTCCAAGAAGGAGGCACCCCCGTGG
CATGCGGAGCTGTGGTCCGCCTGGGTCACTTACAGACGGCCCGAAACTTG
CACTCGCATTTTTTCTCCTCCCCGCTGAGCAATCAGCAGGAAGTGAGCTG
TTTTGGAGAGGACGGGGATGGTGATACCGGGGATGACTGGGAGGTCGTAT
GTGTGTCGGCAGGAGAGAAGTTATGGAGGCGAGACCATGAGATTCGGTTG
AAGCATAAGGATACTGGTAGGTTCTTGCAGACGGAGGCGAAGCATCGTTT
CTCACAGAAGAATTGTCCGAATTGTCCGATTATTGGGCAGCAGGAGGTGT
TTTGCCATCAGACGAGTGGGGTAGAGACGGCTTGGAAGGCGACGCTGGGT
GTGTTCATTCACCCGAAGACTGACGAAGAGGGGGATCGTGACGAGCTGTG
AGGAGGGAAAGGGATGGAAGGGAGGTGATAGAACGAGAAATCGAATGGTT
AGAGTGACAGACGGAGAGTGAGAAGAAGGCATGCAAGCACAAATTTTTAT
TCTTTCGAGGGATTTCTTGGCTTGTTTTCGCTGGCGACAAGTGAAAATTG
AAAAGAATATAATATCAGGTTTACATAGGAAAAAGATGGAAGGCAAAAGC
GAAAATAGAGATTGACATAAAGTGCGGTCGATCTCTCTTCAGGAGGTTGT
AAA back to topprotein sequence of jgi.p|Nanoce1779_2|585063 >mRNA_3247-protein ID=mRNA_3247-protein|Name=jgi.p|Nanoce1779_2|585063|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MMVSHTAVNAALLIVASLVAVVSAVEDDIMTFGSVVKFQHSSSKHFLHSH
QINWGSGSGQQSVTAHRWEDEQGGMWVIKESNSGSFQEGGTPVACGAVVR
LGHLQTARNLHSHFFSSPLSNQQEVSCFGEDGDGDTGDDWEVVCVSAGEK
LWRRDHEIRLKHKDTGRFLQTEAKHRFSQKNCPNCPIIGQQEVFCHQTSG
VETAWKATLGVFIHPKTDEEGDRDEL* back to topmRNA from alignment at scaffold_7:999034..1000603+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Nanoce1779_2|585063|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at scaffold_7:999034..1000603+ (Nannochloropsis oceanica)
CAGCACCTTACACGATTCAGATGATGGTCTCTCACACCGCCGTCAATGCG
GCCTTGCTGATTGTCGCCTCGCTGGTTGCCGTCGTGTCTGCCGTCGAAGG
TACGTTTGGTAGAGGTGAATGGCATGTATCGCTAGGAGAGCGGGTTGCGT
TGATTGGATGTTTGTGGGGTGTGGCACGCACAGGTTTTTAAACGGGAGGA
AAGACTAGGAGTGTTGATGAATTATGGGCTTCGAGTATACTTGATGTCGA
GAGCTCTGTGCAGCAGTCCGAGGCAAGAGTGATGGGATCATATGAATTGT
CTGCAAAATCCTCTGCAGCGTGTATCTCCAGATCTCTGCATCGCAAAGGT
GTCTGGGGCCCGCTTCATGAGCCTTCAGGTCCTTCTCCACCACCTTGGTA
CAGCGCTACTGTGCGACTGGACGTGCTCAAGCGTGCGAGACCCGCCTAGT
TGTGATGGTCGATTTTTGGGCAGCAATGAAAATCATGATGAGCACCTCAT
TTATTTGCGAAAGCTGTAACCGGTGGGATGTGTGTGCGGTTGAGCCATGC
GGCATTCACAAGCACGTGAAGTGGTCAGCCTACGTATCCGCGCTCCCCGC
CTTCTCTTTTCAACCAGTACAGCAAATGAAAGCGTTTTTTTCTCGCGCTT
TCTCGGCAATTATTTTATGCGCAATTATCATCTCTGCCCTCTCCCCTCCC
ATCCTCTCCAACATAGATGACATAATGACTTTCGGCAGCGTCGTCAAGTT
CCAACACAGCTCGAGCAAGCACTTTCTGCACAGCCACCAAATCAATTGGG
GCTCCGGTAGCGGCCAACAATCTGTGACGGCCCATAGGTGGGAAGACGAG
CAAGGCGGGATGTGGGTGATCAAGGAAAGCAACTCGGGAAGCTTCCAAGA
AGGAGGCACCCCCGTGGCATGCGGAGCTGTGGTCCGCCTGGGTCACTTAC
AGACGGCCCGAAACTTGCACTCGCATTTTTTCTCCTCCCCGCTGAGCAAT
CAGCAGGAAGTGAGCTGTTTTGGAGAGGACGGGGATGGTGATACCGGGGA
TGACTGGGAGGTCGTATGTGTGTCGGCAGGAGAGAAGTTATGGAGGCGAG
ACCATGAGATTCGGTTGAAGCATAAGGATACTGGTAGGTTCTTGCAGACG
GAGGCGAAGCATCGTTTCTCACAGAAGAATTGTCCGAATTGTCCGATTAT
TGGGCAGCAGGAGGTGTTTTGCCATCAGACGAGTGGGGTAGAGACGGCTT
GGAAGGCGACGCTGGGTGTGTTCATTCACCCGAAGACTGACGAAGAGGGG
GATCGTGACGAGCTGTGAGGAGGGAAAGGGATGGAAGGGAGGTGATAGAA
CGAGAAATCGAATGGTTAGAGTGACAGACGGAGAGTGAGAAGAAGGCATG
CAAGCACAAATTTTTATTCTTTCGAGGGATTTCTTGGCTTGTTTTCGCTG
GCGACAAGTGAAAATTGAAAAGAATATAATATCAGGTTTACATAGGAAAA
AGATGGAAGGCAAAAGCGAAAATAGAGATTGACATAAAGTGCGGTCGATC
TCTCTTCAGGAGGTTGTAAA back to topCoding sequence (CDS) from alignment at scaffold_7:999034..1000603+ >mRNA_3247 ID=mRNA_3247|Name=jgi.p|Nanoce1779_2|585063|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_7:999034..1000603+ (Nannochloropsis oceanica)
ATGATGGTCTCTCACACCGCCGTCAATGCGGCCTTGCTGATTGTCGCCTC
GCTGGTTGCCGTCGTGTCTGCCGTCGAAGATGACATAATGACTTTCGGCA
GCGTCGTCAAGTTCCAACACAGCTCGAGCAAGCACTTTCTGCACAGCCAC
CAAATCAATTGGGGCTCCGGTAGCGGCCAACAATCTGTGACGGCCCATAG
GTGGGAAGACGAGCAAGGCGGGATGTGGGTGATCAAGGAAAGCAACTCGG
GAAGCTTCCAAGAAGGAGGCACCCCCGTGGCATGCGGAGCTGTGGTCCGC
CTGGGTCACTTACAGACGGCCCGAAACTTGCACTCGCATTTTTTCTCCTC
CCCGCTGAGCAATCAGCAGGAAGTGAGCTGTTTTGGAGAGGACGGGGATG
GTGATACCGGGGATGACTGGGAGGTCGTATGTGTGTCGGCAGGAGAGAAG
TTATGGAGGCGAGACCATGAGATTCGGTTGAAGCATAAGGATACTGGTAG
GTTCTTGCAGACGGAGGCGAAGCATCGTTTCTCACAGAAGAATTGTCCGA
ATTGTCCGATTATTGGGCAGCAGGAGGTGTTTTGCCATCAGACGAGTGGG
GTAGAGACGGCTTGGAAGGCGACGCTGGGTGTGTTCATTCACCCGAAGAC
TGACGAAGAGGGGGATCGTGACGAGCTGTGAATGATGGTCTCTCACACCG
CCGTCAATGCGGCCTTGCTGATTGTCGCCTCGCTGGTTGCCGTCGTGTCT
GCCGTCGAAGATGACATAATGACTTTCGGCAGCGTCGTCAAGTTCCAACA
CAGCTCGAGCAAGCACTTTCTGCACAGCCACCAAATCAATTGGGGCTCCG
GTAGCGGCCAACAATCTGTGACGGCCCATAGGTGGGAAGACGAGCAAGGC
GGGATGTGGGTGATCAAGGAAAGCAACTCGGGAAGCTTCCAAGAAGGAGG
CACCCCCGTGGCATGCGGAGCTGTGGTCCGCCTGGGTCACTTACAGACGG
CCCGAAACTTGCACTCGCATTTTTTCTCCTCCCCGCTGAGCAATCAGCAG
GAAGTGAGCTGTTTTGGAGAGGACGGGGATGGTGATACCGGGGATGACTG
GGAGGTCGTATGTGTGTCGGCAGGAGAGAAGTTATGGAGGCGAGACCATG
AGATTCGGTTGAAGCATAAGGATACTGGTAGGTTCTTGCAGACGGAGGCG
AAGCATCGTTTCTCACAGAAGAATTGTCCGAATTGTCCGATTATTGGGCA
GCAGGAGGTGTTTTGCCATCAGACGAGTGGGGTAGAGACGGCTTGGAAGG
CGACGCTGGGTGTGTTCATTCACCCGAAGACTGACGAAGAGGGGGATCGT
GACGAGCTGTGA back to top
|