jgi.p|Nanoce1779_2|585060, mRNA_3245 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585060
Unique NamemRNA_3245
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_7:995751..997106 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585146
TrackFilteredModels2
ProteinId585060
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:995751..997106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585060gene_3245Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585060mRNA_3245-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3245CDS_3245Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3245 ID=mRNA_3245|Name=jgi.p|Nanoce1779_2|585060|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
GCCTCCGTCGGGAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACTATACCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCC
ACACCAGAAACAGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCC
ACTCCTGTTCCTACTCTTAGTACTCTTACTATTCCTACTGCTATTACAAT
TGCTGCTGCTGCTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCA
CGCGCACCCATCAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCC
GCTCAACCCTGGAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTC
CTCCTGCCCCTCCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCA
CCACCGCGGCAATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCA
GCAGTAGCAGCAGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACC
AAAGCTCTCTGTTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATC
AGCTGCATCAGCGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGA
CGCATAGCCCGATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAA
GAAGAGGAAGAACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTA
TGGTTAGGGTGAGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACG
GAGGCAGAGAGGAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCAC
AGATATTGAGGAGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGG
TGAAGGAGGAGGTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCG
GTGGATTCGGAAAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGG
GGAGATGACCGGACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATA
TTTCATTTTGAGGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTG
ATGCGTGCGTGCATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAG
CGAAGCCAGCAAATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGA
ATGGATGGATGGAAGGAAGGAGTAACTACTATAAATATACAAACCTACCA
TGCATGATTTGTGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCA
TTTTTATTTGTTTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACG
AGAAGGGTATGACGGATTGAAACAAAACAGACGAACAAACCACCAAATAC
AACAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|585060

>mRNA_3245-protein ID=mRNA_3245-protein|Name=jgi.p|Nanoce1779_2|585060|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MAKLIEAAVAAQPWNARPPSSTKITTSSCPSSASSSAPSSSTTTTAAIAT
IPTPAALSSSAVAAAANRMSTASSFPPKLSVATSKDEGEGHTHQLHQRYV
GVYSPRSRRGRIARYLDKRTKRNWDMKKRKNKGVYMGRRDLDTMVRVRGR
FTKKVTAVVTEAERKEMKNVGSLAGTTDIEEGRTEEEREREEEVKEEVRD
FMDTFFDLTSVDSEKEFASIFSSQPVGEMTGPTGAGGIGMSFDISF*
back to top

mRNA from alignment at scaffold_7:995751..997106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3245 ID=mRNA_3245|Name=jgi.p|Nanoce1779_2|585060|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at scaffold_7:995751..997106- (Nannochloropsis oceanica)
GCCTCCGTCGGGAGCAGCAACTGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACTATACCAAAATTAATAACAACAGCCACAGCAGCAACAACAGCC
ACACCAGAAACAGCAGCAGCAGCAACAGCAGCAGTATTAATACTTCTTCC
ACTCCTGTTCCTACTCTTAGTACTCTTACTATTCCTACTGCTATTACAAT
TGCTGCTGCTGCTTCCGCCGCAGCATCGTCCGTGGGTTTAGTGCCCGGCA
CGCGCACCCATCAACATTATATGGCCAAACTGATTGAAGCAGCCGTAGCC
GCTCAACCCTGGAATGCACGCCCTCCCTCCTCCACCAAAATCACCACTTC
CTCCTGCCCCTCCTCCGCCTCTAGCTCCGCCCCCTCCTCCTCCACCACCA
CCACCGCGGCAATCGCCACCATTCCAACCCCCGCAGCACTCTCATCCTCA
GCAGTAGCAGCAGCAGCTAACCGTATGAGCACGGCTTCTTCTTTTCCACC
AAAGCTCTCTGTTGCTACCAGTAAAGACGAAGGCGAAGGCCACACACATC
AGCTGCATCAGCGGTATGTGGGTGTCTACAGCCCTAGATCTCGCAGAGGA
CGCATAGCCCGATATCTGGATAAGAGGACAAAGAGAAACTGGGACATGAA
GAAGAGGAAGAACAAGGGGGTGTATATGGGGAGAAGGGATTTGGACACTA
TGGTTAGGGTGAGGGGGAGGTTTACCAAGAAAGTGACGGCGGTGGTGACG
GAGGCAGAGAGGAAGGAGATGAAAAACGTGGGATCTTTGGCAGGGACCAC
AGATATTGAGGAGGGACGGACGGAGGAGGAAAGGGAAAGGGAAGAAGAGG
TGAAGGAGGAGGTGAGGGATTTTATGGATACGTTCTTTGACTTGACGTCG
GTGGATTCGGAAAAGGAGTTTGCGTCTATCTTTTCATCTCAGCCTGTGGG
GGAGATGACCGGACCGACGGGTGCCGGAGGGATAGGGATGTCGTTTGATA
TTTCATTTTGAGGGAAGGCGTGTGAAAAGAGGTTTGTGAATGTAAGACTG
ATGCGTGCGTGCATTTACGTGCATGTCTGTGTTTTTACTTGTGGTGCAAG
CGAAGCCAGCAAATGTGCATGAGTGCGTGCGTATCGGGTTAAATGGATGA
ATGGATGGATGGAAGGAAGGAGTAACTACTATAAATATACAAACCTACCA
TGCATGATTTGTGAACTGAACGTGTGGATGTCAACCATATTGAGAATGCA
TTTTTATTTGTTTTATTTGTTATGTCAACGAATGCCAGGAGGCACAAACG
AGAAGGGTATGACGGATTGAAACAAAACAGACGAACAAACCACCAAATAC
AACAAC
back to top

Coding sequence (CDS) from alignment at scaffold_7:995751..997106-

>mRNA_3245 ID=mRNA_3245|Name=jgi.p|Nanoce1779_2|585060|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_7:995751..997106- (Nannochloropsis oceanica)
ATGGCCAAACTGATTGAAGCAGCCGTAGCCGCTCAACCCTGGAATGCACG
CCCTCCCTCCTCCACCAAAATCACCACTTCCTCCTGCCCCTCCTCCGCCT
CTAGCTCCGCCCCCTCCTCCTCCACCACCACCACCGCGGCAATCGCCACC
ATTCCAACCCCCGCAGCACTCTCATCCTCAGCAGTAGCAGCAGCAGCTAA
CCGTATGAGCACGGCTTCTTCTTTTCCACCAAAGCTCTCTGTTGCTACCA
GTAAAGACGAAGGCGAAGGCCACACACATCAGCTGCATCAGCGGTATGTG
GGTGTCTACAGCCCTAGATCTCGCAGAGGACGCATAGCCCGATATCTGGA
TAAGAGGACAAAGAGAAACTGGGACATGAAGAAGAGGAAGAACAAGGGGG
TGTATATGGGGAGAAGGGATTTGGACACTATGGTTAGGGTGAGGGGGAGG
TTTACCAAGAAAGTGACGGCGGTGGTGACGGAGGCAGAGAGGAAGGAGAT
GAAAAACGTGGGATCTTTGGCAGGGACCACAGATATTGAGGAGGGACGGA
CGGAGGAGGAAAGGGAAAGGGAAGAAGAGGTGAAGGAGGAGGTGAGGGAT
TTTATGGATACGTTCTTTGACTTGACGTCGGTGGATTCGGAAAAGGAGTT
TGCGTCTATCTTTTCATCTCAGCCTGTGGGGGAGATGACCGGACCGACGG
GTGCCGGAGGGATAGGGATGTCGTTTGATATTTCATTTTGA
back to top
Synonyms
Publications