jgi.p|Nanoce1779_2|585059, mRNA_3244 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585059
Unique Name	mRNA_3244
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1358
Alignment location	scaffold_7:994402..995759 +

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Properties


Property Name	Value
TranscriptId	585145
Track	FilteredModels2
ProteinId	585059

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:994402..995759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585059	gene_3244	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585059	mRNA_3244-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3244	CDS_3244	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:994402..995759+
coding sequence from alignment at scaffold_7:994402..995759+

mRNA sequence

>mRNA_3244 ID=mRNA_3244|Name=jgi.p|Nanoce1779_2|585059|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
CAACAGGCAAGTGCCGGTGCATGATCGCAGGCAAGGTCTGCCCGAGCGCC
GCCTTTTCGGTTCTCGTCCTGGTCCTCGTTGGGCAGGCTGCGAACGCGAA
TTCTCCCTGCAAATACCTGCATCGACCTCCCCAAGCCGGTTTCCTAAGAA
CGAGAAGGCCGCCATTTTCCCGTTCCTGTTATTCAAGTACAAGACCAAGG
TCAATCATGGCTTCTCCCTCGTCCACCTATTCTTTTACCTCCTCTGCGTT
CTTCACTTGGGTTGCCGACTACGAGATCAACCTGCAATCCTCCAATCTTC
AATCCTCCTCCGCGTCCATCGCCCCGCCGACTTTCAACAGCAACGGTAAC
GATGAAACTACCGTGACTTCTCCGACAATTCTTTTACCCCCCAATGTCAC
CGCCGCGGCCACAGACTTGCATCCTCTTTCCGAACCAACATTGTCTTCTC
CTCCCCCCAACAAACCTTTGGCCAAGCTATGGACGATCCGGCGCCGTTTG
GACAGCAACAGCAGCATCAAGCATACCTTGGCGGGTATAGCGGGCATTGC
AATACCAACAACATCAGACGCACAACCAAGACCGTTTCTCCTTGCAGATT
CGGTGCTGGAACAGGACAAGAACGTGTGCAAGCTGCTGCTGCGCGGCCTC
GGTGGCGACAACTCTGAAGCGCCTGTGTCAGACGAAAAGGAAGTGGAGCA
CGTGTCCTGGGTTGACAATCACGGGCATGACCTTCTCTCACTCACAAGCA
AGGGTTTGCCCCGGCCCTTGGTACATCGATTGAATATTCTGCATAAAGGC
GCAGGAATTCTGGTGCGTGATGAACAAAAGCGAGTCTTTGTCCACCAGCG
GGCGGCGCACAAGCGGCTTTTTCCTTCCATGTACGACATGTTTGTAGGTG
GTGTGAGTTTATTCGGAGAGGATACGAGGGAGACGGCCGGCAGGGAGCTG
AAAGAAGAGTTGGGGTTTTGGCGGGAGGGAGGAGAGGGGAACGAGGAAGC
ATTTCGATTCTTGTTTCATGTGCTGATTGAGACGAGTTATAATCGTTGCT
TTGTGGATGTATACGAGTATGTGGTTCACACCGGGGAGGAGGGAGGGAAA
GTTAGGTTGGATTCGGAAGAGGTGCAGTGGGGAGAATGGGCGACGATGGA
AGAGGTAAAAAGGAGAGTGGCTTTGGATGGGCAGGAGGGACAGTGGACGT
TTGTCCCCGATGGGTTGTTAGTGTGGAGGGCGCTGGTTCAGGCGCAAGGT
GGGGAGGAGGGGGTAGTATGAGCTTTAAACAAGCTTATGAAATCAAAAGA
AGGGAAAAGCAGTAGTGTCGTTCACAAAGAAAAGAGAGGTTTTTCGAAGG
TTGTTGTA

protein sequence of jgi.p|Nanoce1779_2|585059

>mRNA_3244-protein ID=mRNA_3244-protein|Name=jgi.p|Nanoce1779_2|585059|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MIAGKVCPSAAFSVLVLVLVGQAANANSPCKYLHRPPQAGFLRTRRPPFS
RSCYSSTRPRSIMASPSSTYSFTSSAFFTWVADYEINLQSSNLQSSSASI
APPTFNSNGNDETTVTSPTILLPPNVTAAATDLHPLSEPTLSSPPPNKPL
AKLWTIRRRLDSNSSIKHTLAGIAGIAIPTTSDAQPRPFLLADSVLEQDK
NVCKLLLRGLGGDNSEAPVSDEKEVEHVSWVDNHGHDLLSLTSKGLPRPL
VHRLNILHKGAGILVRDEQKRVFVHQRAAHKRLFPSMYDMFVGGVSLFGE
DTRETAGRELKEELGFWREGGEGNEEAFRFLFHVLIETSYNRCFVDVYEY
VVHTGEEGGKVRLDSEEVQWGEWATMEEVKRRVALDGQEGQWTFVPDGLL
VWRALVQAQGGEEGVV*

mRNA from alignment at scaffold_7:994402..995759+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3244 ID=mRNA_3244|Name=jgi.p|Nanoce1779_2|585059|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp|location=Sequence derived from alignment at scaffold_7:994402..995759+ (Nannochloropsis oceanica)
CAACAGGCAAGTGCCGGTGCATGATCGCAGGCAAGGTCTGCCCGAGCGCC
GCCTTTTCGGTTCTCGTCCTGGTCCTCGTTGGGCAGGCTGCGAACGCGAA
TTCTCCCTGCAAATACCTGCATCGACCTCCCCAAGCCGGTTTCCTAAGAA
CGAGAAGGCCGCCATTTTCCCGTTCCTGTTATTCAAGTACAAGACCAAGG
TCAATCATGGCTTCTCCCTCGTCCACCTATTCTTTTACCTCCTCTGCGTT
CTTCACTTGGGTTGCCGACTACGAGATCAACCTGCAATCCTCCAATCTTC
AATCCTCCTCCGCGTCCATCGCCCCGCCGACTTTCAACAGCAACGGTAAC
GATGAAACTACCGTGACTTCTCCGACAATTCTTTTACCCCCCAATGTCAC
CGCCGCGGCCACAGACTTGCATCCTCTTTCCGAACCAACATTGTCTTCTC
CTCCCCCCAACAAACCTTTGGCCAAGCTATGGACGATCCGGCGCCGTTTG
GACAGCAACAGCAGCATCAAGCATACCTTGGCGGGTATAGCGGGCATTGC
AATACCAACAACATCAGACGCACAACCAAGACCGTTTCTCCTTGCAGATT
CGGTGCTGGAACAGGACAAGAACGTGTGCAAGCTGCTGCTGCGCGGCCTC
GGTGGCGACAACTCTGAAGCGCCTGTGTCAGACGAAAAGGAAGTGGAGCA
CGTGTCCTGGGTTGACAATCACGGGCATGACCTTCTCTCACTCACAAGCA
AGGGTTTGCCCCGGCCCTTGGTACATCGATTGAATATTCTGCATAAAGGC
GCAGGAATTCTGGTGCGTGATGAACAAAAGCGAGTCTTTGTCCACCAGCG
GGCGGCGCACAAGCGGCTTTTTCCTTCCATGTACGACATGTTTGTAGGTG
GTGTGAGTTTATTCGGAGAGGATACGAGGGAGACGGCCGGCAGGGAGCTG
AAAGAAGAGTTGGGGTTTTGGCGGGAGGGAGGAGAGGGGAACGAGGAAGC
ATTTCGATTCTTGTTTCATGTGCTGATTGAGACGAGTTATAATCGTTGCT
TTGTGGATGTATACGAGTATGTGGTTCACACCGGGGAGGAGGGAGGGAAA
GTTAGGTTGGATTCGGAAGAGGTGCAGTGGGGAGAATGGGCGACGATGGA
AGAGGTAAAAAGGAGAGTGGCTTTGGATGGGCAGGAGGGACAGTGGACGT
TTGTCCCCGATGGGTTGTTAGTGTGGAGGGCGCTGGTTCAGGCGCAAGGT
GGGGAGGAGGGGGTAGTATGAGCTTTAAACAAGCTTATGAAATCAAAAGA
AGGGAAAAGCAGTAGTGTCGTTCACAAAGAAAAGAGAGGTTTTTCGAAGG
TTGTTGTA

Coding sequence (CDS) from alignment at scaffold_7:994402..995759+

>mRNA_3244 ID=mRNA_3244|Name=jgi.p|Nanoce1779_2|585059|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_7:994402..995759+ (Nannochloropsis oceanica)
ATGATCGCAGGCAAGGTCTGCCCGAGCGCCGCCTTTTCGGTTCTCGTCCT
GGTCCTCGTTGGGCAGGCTGCGAACGCGAATTCTCCCTGCAAATACCTGC
ATCGACCTCCCCAAGCCGGTTTCCTAAGAACGAGAAGGCCGCCATTTTCC
CGTTCCTGTTATTCAAGTACAAGACCAAGGTCAATCATGGCTTCTCCCTC
GTCCACCTATTCTTTTACCTCCTCTGCGTTCTTCACTTGGGTTGCCGACT
ACGAGATCAACCTGCAATCCTCCAATCTTCAATCCTCCTCCGCGTCCATC
GCCCCGCCGACTTTCAACAGCAACGGTAACGATGAAACTACCGTGACTTC
TCCGACAATTCTTTTACCCCCCAATGTCACCGCCGCGGCCACAGACTTGC
ATCCTCTTTCCGAACCAACATTGTCTTCTCCTCCCCCCAACAAACCTTTG
GCCAAGCTATGGACGATCCGGCGCCGTTTGGACAGCAACAGCAGCATCAA
GCATACCTTGGCGGGTATAGCGGGCATTGCAATACCAACAACATCAGACG
CACAACCAAGACCGTTTCTCCTTGCAGATTCGGTGCTGGAACAGGACAAG
AACGTGTGCAAGCTGCTGCTGCGCGGCCTCGGTGGCGACAACTCTGAAGC
GCCTGTGTCAGACGAAAAGGAAGTGGAGCACGTGTCCTGGGTTGACAATC
ACGGGCATGACCTTCTCTCACTCACAAGCAAGGGTTTGCCCCGGCCCTTG
GTACATCGATTGAATATTCTGCATAAAGGCGCAGGAATTCTGGTGCGTGA
TGAACAAAAGCGAGTCTTTGTCCACCAGCGGGCGGCGCACAAGCGGCTTT
TTCCTTCCATGTACGACATGTTTGTAGGTGGTGTGAGTTTATTCGGAGAG
GATACGAGGGAGACGGCCGGCAGGGAGCTGAAAGAAGAGTTGGGGTTTTG
GCGGGAGGGAGGAGAGGGGAACGAGGAAGCATTTCGATTCTTGTTTCATG
TGCTGATTGAGACGAGTTATAATCGTTGCTTTGTGGATGTATACGAGTAT
GTGGTTCACACCGGGGAGGAGGGAGGGAAAGTTAGGTTGGATTCGGAAGA
GGTGCAGTGGGGAGAATGGGCGACGATGGAAGAGGTAAAAAGGAGAGTGG
CTTTGGATGGGCAGGAGGGACAGTGGACGTTTGTCCCCGATGGGTTGTTA
GTGTGGAGGGCGCTGGTTCAGGCGCAAGGTGGGGAGGAGGGGGTAGTATG
A

Synonyms

Publications