jgi.p|Nanoce1779_2|585052, mRNA_3242 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585052
Unique Name	mRNA_3242
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1184
Alignment location	scaffold_7:989097..990583 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585138
Track	FilteredModels2
ProteinId	585052

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:989097..990583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585052	gene_3242	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585052	mRNA_3242-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3242	CDS_3242	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:989097..990583+
coding sequence from alignment at scaffold_7:989097..990583+

mRNA sequence

>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Nanoce1779_2|585052|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp
ACAGACCACAGACCACGGCGACACACCACCCACCGACTCGGCTGCCGGCG
ATGAAAGTCTTTAACAGCATTGCCAGCCGCTTTGGCCGGGAAAACCTGGA
AGCCAACTCCTCAGTCGCCCCAAAGAGCCCTGTTGTGGTGACGGGTGCCA
CGGGATACATTGCAAGCCATATCGTCCGAGTGCTGCTTGAGCAAGGCTTC
ACAGTGCGGGCGACGGTCCGCGACCCCTCAAATACCGGGCGTCTCAAGTT
CCTAGCCGACCTTCCTGGGGCCACTGATCGCCTTACCTTTCACAAGGCCG
ACTTGCTCGCCAAAGGCTCATTCGATGAGGTAATCGCTGGGGCAATGTCC
GTCATTCACACCGCCTCCCCCGTCCCCTTGGATGTGCCCGATGATCCTTA
CACTGCCATTGTGGCTCCTGCGGTGGAAGGGACCAAGAATGTGTTCGATT
CGATTAGCAAGGCAGGAACGGTGAAGAGGGTGGTGCTAACTTCTTCCATT
CGGGCGGTGTTTGGCTTCGGGAATGAGAAGCCCGCGGGATACGTGTACAC
GGAAGAGGATTGGAATACCACTTCTACCTTGGAAAACAACCAGGGCTACA
GTTTGTCGAAGACCCTGGCGGAGAAGACGGCGTGGGAGTACGCGGAAAAG
GCAGGAGGGAAGTGGGATTTGGTGACGATTCAACCGGGGGTGGTGTACGG
TCCGTCGTTGTCGGGAAGGGAGGATGGGATGAGCATGACGTTATTCAAGA
ATCTGGTGACGGGGCATCAGACGGGAATGGTGGACTTGGCCTGGGGTATG
GTCGATGTTCGAGATGTGGCTTCGGTCCATGTGGCCGCTTTGATGAATCC
GAAGGCGCAAGGGAGGTACATCTGCACAAGCGCTACCTTGTCGTTTCAGG
AGATTCTCGACACAGTCCGGGGGAGGATTGCGCGAAAATTGCCCAGGTTT
GCAGTGCCGAAGGCTCTGCTGTGGGTAGGTTATTATGCAGGAATGGCGGG
GAAGTCGTTGGCGTGGGAAGATATTGCATATAATGTGGGAAATCGGGTTG
TGTTTAGCAATGAGAAGGCGCGGAAGGACTTGTTGCTTGAAGGATTTATT
GCCCCGGAGAAGACGTTCGGAGATATGTATGAGAGCTTTTTGAAAGCGGG
GATTGTGCCTGAGGGAAACTAAAGGGAGGGAGAG

protein sequence of jgi.p|Nanoce1779_2|585052

>mRNA_3242-protein ID=mRNA_3242-protein|Name=jgi.p|Nanoce1779_2|585052|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MKVFNSIASRFGRENLEANSSVAPKSPVVVTGATGYIASHIVRVLLEQGF
TVRATVRDPSNTGRLKFLADLPGATDRLTFHKADLLAKGSFDEVIAGAMS
VIHTASPVPLDVPDDPYTAIVAPAVEGTKNVFDSISKAGTVKRVVLTSSI
RAVFGFGNEKPAGYVYTEEDWNTTSTLENNQGYSLSKTLAEKTAWEYAEK
AGGKWDLVTIQPGVVYGPSLSGREDGMSMTLFKNLVTGHQTGMVDLAWGM
VDVRDVASVHVAALMNPKAQGRYICTSATLSFQEILDTVRGRIARKLPRF
AVPKALLWVGYYAGMAGKSLAWEDIAYNVGNRVVFSNEKARKDLLLEGFI
APEKTFGDMYESFLKAGIVPEGN*

mRNA from alignment at scaffold_7:989097..990583+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Nanoce1779_2|585052|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_7:989097..990583+ (Nannochloropsis oceanica)
ACAGACCACAGACCACGGCGACACACCACCCACCGACTCGGCTGCCGGCG
ATGAAAGTCTTTAACAGCATTGCCAGCCGCTTTGGCCGGGAAAACCTGGA
AGCCAACTCCTCAGTCGCCCCAAAGGTACGTGTGTTAAGTTGGTCCGTAT
GTGAGACTACTATATATATACTTATACTCGTTTCCCCTTCACTTAGAGCC
CTGTTGTGGTGACGGGTGCCACGGGATACATTGCAAGCCATATCGTCCGA
GTGCTGCTTGAGCAAGGCTTCACAGTGCGGGCGACGGTCCGCGACCCCTC
AAATACCGGGCGTCTCAAGGTAAGAGAAAAGAAAAAATATCACACGCAAA
AATGTGGGAAACGGTTTGGACAAGAGGAATGTCCAGGAATGTATACACAC
ATTGCTATATTCTTGCACCGAAATATAAGAGAAAGGGGGCCTCTCCACAA
GCCGTTGTACAGGATTATCTGATGTCTTGCAGCATGTGTGCAAATAAACT
GCAATCAACCCGCTCGCCTCACACAACACGATCATCCCCCAATGACAATA
GTTCCTAGCCGACCTTCCTGGGGCCACTGATCGCCTTACCTTTCACAAGG
CCGACTTGCTCGCCAAAGGCTCATTCGATGAGGTAATCGCTGGGGCAATG
TCCGTCATTCACACCGCCTCCCCCGTCCCCTTGGATGTGCCCGATGATCC
TTACACTGCCATTGTGGCTCCTGCGGTGGAAGGGACCAAGAATGTGTTCG
ATTCGATTAGCAAGGCAGGAACGGTGAAGAGGGTGGTGCTAACTTCTTCC
ATTCGGGCGGTGTTTGGCTTCGGGAATGAGAAGCCCGCGGGATACGTGTA
CACGGAAGAGGATTGGAATACCACTTCTACCTTGGAAAACAACCAGGGCT
ACAGTTTGTCGAAGACCCTGGCGGAGAAGACGGCGTGGGAGTACGCGGAA
AAGGCAGGAGGGAAGTGGGATTTGGTGACGATTCAACCGGGGGTGGTGTA
CGGTCCGTCGTTGTCGGGAAGGGAGGATGGGATGAGCATGACGTTATTCA
AGAATCTGGTGACGGGGCATCAGACGGGAATGGTGGACTTGGCCTGGGGT
ATGGTCGATGTTCGAGATGTGGCTTCGGTCCATGTGGCCGCTTTGATGAA
TCCGAAGGCGCAAGGGAGGTACATCTGCACAAGCGCTACCTTGTCGTTTC
AGGAGATTCTCGACACAGTCCGGGGGAGGATTGCGCGAAAATTGCCCAGG
TTTGCAGTGCCGAAGGCTCTGCTGTGGGTAGGTTATTATGCAGGAATGGC
GGGGAAGTCGTTGGCGTGGGAAGATATTGCATATAATGTGGGAAATCGGG
TTGTGTTTAGCAATGAGAAGGCGCGGAAGGACTTGTTGCTTGAAGGATTT
ATTGCCCCGGAGAAGACGTTCGGAGATATGTATGAGAGCTTTTTGAAAGC
GGGGATTGTGCCTGAGGGAAACTAAAGGGAGGGAGAG

Coding sequence (CDS) from alignment at scaffold_7:989097..990583+

>mRNA_3242 ID=mRNA_3242|Name=jgi.p|Nanoce1779_2|585052|organism=Nannochloropsis oceanica|type=CDS|length=3366bp|location=Sequence derived from alignment at scaffold_7:989097..990583+ (Nannochloropsis oceanica)
ATGAAAGTCTTTAACAGCATTGCCAGCCGCTTTGGCCGGGAAAACCTGGA
AGCCAACTCCTCAGTCGCCCCAAAGAGCCCTGTTGTGGTGACGGGTGCCA
CGGGATACATTGCAAGCCATATCGTCCGAGTGCTGCTTGAGCAAGGCTTC
ACAGTGCGGGCGACGGTCCGCGACCCCTCAAATACCGGGCGTCTCAAGTT
CCTAGCCGACCTTCCTGGGGCCACTGATCGCCTTACCTTTCACAAGGCCG
ACTTGCTCGCCAAAGGCTCATTCGATGAGGTAATCGCTGGGGCAATGTCC
GTCATTCACACCGCCTCCCCCGTCCCCTTGGATGTGCCCGATGATCCTTA
CACTGCCATTGTGGCTCCTGCGGTGGAAGGGACCAAGAATGTGTTCGATT
CGATTAGCAAGGCAGGAACGGTGAAGAGGGTGGTGCTAACTTCTTCCATT
CGGGCGGTGTTTGGCTTCGGGAATGAGAAGCCCGCGGGATACGTGTACAC
GGAAGAGGATTGGAATACCACTTCTACCTTGGAAAACAACCAGGGCTACA
GTTTGTCGAAGACCCTGGCGGAGAAGACGGCGTGGGAGTACGCGGAAAAG
GCAGGAGGGAAGTGGGATTTGGTGACGATTCAACCGGGGGTGGTGTACGG
TCCGTCGTTGTCGGGAAGGGAGGATGGGATGAGCATGACGTTATTCAAGA
ATCTGGTGACGGGGCATCAGACGGGAATGGTGGACTTGGCCTGGGGTATG
GTCGATGTTCGAGATGTGGCTTCGGTCCATGTGGCCGCTTTGATGAATCC
GAAGGCGCAAGGGAGGTACATCTGCACAAGCGCTACCTTGTCGTTTCAGG
AGATTCTCGACACAGTCCGGGGGAGGATTGCGCGAAAATTGCCCAGGTTT
GCAGTGCCGAAGGCTCTGCTGTGGGTAGGTTATTATGCAGGAATGGCGGG
GAAGTCGTTGGCGTGGGAAGATATTGCATATAATGTGGGAAATCGGGTTG
TGTTTAGCAATGAGAAGGCGCGGAAGGACTTGTTGCTTGAAGGATTTATT
GCCCCGGAGAAGACGTTCGGAGATATGTATGAGAGCTTTTTGAAAGCGGG
GATTGTGCCTGAGGGAAACTAAATGAAAGTCTTTAACAGCATTGCCAGCC
GCTTTGGCCGGGAAAACCTGGAAGCCAACTCCTCAGTCGCCCCAAAGAGC
CCTGTTGTGGTGACGGGTGCCACGGGATACATTGCAAGCCATATCGTCCG
AGTGCTGCTTGAGCAAGGCTTCACAGTGCGGGCGACGGTCCGCGACCCCT
CAAATACCGGGCGTCTCAAGTTCCTAGCCGACCTTCCTGGGGCCACTGAT
CGCCTTACCTTTCACAAGGCCGACTTGCTCGCCAAAGGCTCATTCGATGA
GGTAATCGCTGGGGCAATGTCCGTCATTCACACCGCCTCCCCCGTCCCCT
TGGATGTGCCCGATGATCCTTACACTGCCATTGTGGCTCCTGCGGTGGAA
GGGACCAAGAATGTGTTCGATTCGATTAGCAAGGCAGGAACGGTGAAGAG
GGTGGTGCTAACTTCTTCCATTCGGGCGGTGTTTGGCTTCGGGAATGAGA
AGCCCGCGGGATACGTGTACACGGAAGAGGATTGGAATACCACTTCTACC
TTGGAAAACAACCAGGGCTACAGTTTGTCGAAGACCCTGGCGGAGAAGAC
GGCGTGGGAGTACGCGGAAAAGGCAGGAGGGAAGTGGGATTTGGTGACGA
TTCAACCGGGGGTGGTGTACGGTCCGTCGTTGTCGGGAAGGGAGGATGGG
ATGAGCATGACGTTATTCAAGAATCTGGTGACGGGGCATCAGACGGGAAT
GGTGGACTTGGCCTGGGGTATGGTCGATGTTCGAGATGTGGCTTCGGTCC
ATGTGGCCGCTTTGATGAATCCGAAGGCGCAAGGGAGGTACATCTGCACA
AGCGCTACCTTGTCGTTTCAGGAGATTCTCGACACAGTCCGGGGGAGGAT
TGCGCGAAAATTGCCCAGGTTTGCAGTGCCGAAGGCTCTGCTGTGGGTAG
GTTATTATGCAGGAATGGCGGGGAAGTCGTTGGCGTGGGAAGATATTGCA
TATAATGTGGGAAATCGGGTTGTGTTTAGCAATGAGAAGGCGCGGAAGGA
CTTGTTGCTTGAAGGATTTATTGCCCCGGAGAAGACGTTCGGAGATATGT
ATGAGAGCTTTTTGAAAGCGGGGATTGTGCCTGAGGGAAACTAAATGAAA
GTCTTTAACAGCATTGCCAGCCGCTTTGGCCGGGAAAACCTGGAAGCCAA
CTCCTCAGTCGCCCCAAAGAGCCCTGTTGTGGTGACGGGTGCCACGGGAT
ACATTGCAAGCCATATCGTCCGAGTGCTGCTTGAGCAAGGCTTCACAGTG
CGGGCGACGGTCCGCGACCCCTCAAATACCGGGCGTCTCAAGTTCCTAGC
CGACCTTCCTGGGGCCACTGATCGCCTTACCTTTCACAAGGCCGACTTGC
TCGCCAAAGGCTCATTCGATGAGGTAATCGCTGGGGCAATGTCCGTCATT
CACACCGCCTCCCCCGTCCCCTTGGATGTGCCCGATGATCCTTACACTGC
CATTGTGGCTCCTGCGGTGGAAGGGACCAAGAATGTGTTCGATTCGATTA
GCAAGGCAGGAACGGTGAAGAGGGTGGTGCTAACTTCTTCCATTCGGGCG
GTGTTTGGCTTCGGGAATGAGAAGCCCGCGGGATACGTGTACACGGAAGA
GGATTGGAATACCACTTCTACCTTGGAAAACAACCAGGGCTACAGTTTGT
CGAAGACCCTGGCGGAGAAGACGGCGTGGGAGTACGCGGAAAAGGCAGGA
GGGAAGTGGGATTTGGTGACGATTCAACCGGGGGTGGTGTACGGTCCGTC
GTTGTCGGGAAGGGAGGATGGGATGAGCATGACGTTATTCAAGAATCTGG
TGACGGGGCATCAGACGGGAATGGTGGACTTGGCCTGGGGTATGGTCGAT
GTTCGAGATGTGGCTTCGGTCCATGTGGCCGCTTTGATGAATCCGAAGGC
GCAAGGGAGGTACATCTGCACAAGCGCTACCTTGTCGTTTCAGGAGATTC
TCGACACAGTCCGGGGGAGGATTGCGCGAAAATTGCCCAGGTTTGCAGTG
CCGAAGGCTCTGCTGTGGGTAGGTTATTATGCAGGAATGGCGGGGAAGTC
GTTGGCGTGGGAAGATATTGCATATAATGTGGGAAATCGGGTTGTGTTTA
GCAATGAGAAGGCGCGGAAGGACTTGTTGCTTGAAGGATTTATTGCCCCG
GAGAAGACGTTCGGAGATATGTATGAGAGCTTTTTGAAAGCGGGGATTGT
GCCTGAGGGAAACTAA

Synonyms

Publications