jgi.p|Nanoce1779_2|565002, mRNA_3241 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565002
Unique NamemRNA_3241
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1980
Alignment locationscaffold_7:986675..988654 -

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Properties
Property NameValue
TranscriptId565088
TrackFilteredModels2
ProteinId565002
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:986675..988654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565002gene_3241Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3241CDS_3241Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565002mRNA_3241-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Nanoce1779_2|565002|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp
ATGAGGGCACGCCTCCTCCCCTGCCTCCTCCTTGCCCTCGCCCTCCTTGC
GGTTACAACCACTTCCGCCTCCCCTTTCGCAGAAGAATGCCTTGACACCG
ATCTACAAGCGCCCCCTGAACGAGGCCCAAAGAAAGTCGACGTGGAAGCT
CGCCCGCACACCCCCAATGTGGGAGATGTCATGGCCAACGTCCACCGCAA
AATGCCTGCGGCATTGCCCGGGTGGATGGGCAGGATCTGGTCTAGCGTCA
GCCATATCACTGCACCACACATCCGAAAACTAGTGCATTATGGCGGGGAA
GTCTTGCGCCCAGGTGAGGACATGGCAGAACGTTGCAAGAAGCGACGCAA
GCCAATCGTGTCTGGTGCAGACACGGGCACGGGTGACAGCAGCAGCAGCG
GTTCGGACACGGGTCTGGATGCCTGTACCTTGTTAGATGTGTCATGGTCC
TTGGGCCAACAGCTGGGTAATCTAGGTAAGAATGCGTCGGCTAAAACAGC
ATGGTGGCTCTCTCAGGAAGTGCCCCGTGTCGCACTCCCGTTTCACCTCA
TGTGGGTTGAGCTTGCCGTGGAAGTTTACCCTGTGACCAGAGCGGATGTC
GCCTCTCTCATCCTCCACCAGCGTCCTCACTTCGTGGTGCAGCTTTGTGA
TATTCTCTCAGAATACCTCGTCCGTGCGCTGCACAGCATTCCCATGCTTG
ATTTTTTGATCAATGCCCGCTATGATCTTCTTTATATCCCCGACGCTGCA
TGTCCCCTCACGCAAGTGGATGGCCTCATTTTTCGTGCCCCCCTGACCGC
CGAGGGCTTCTGCGAAATTCGTCCATGTGAGCACGAAAGCTCCATCGCCG
GACAAACGGCTGCTGGAGGCGTGAGCCCGTTTTGTGAGTGTGATTTGACG
AAGAAGCGCTGTCGCCTCCGGGCTCAATCGCTGAGGGATTTCCAACTCTT
GGTCGATGAGCCCTTAGCGAGCAAGACCTTTGACGCCCAGGCAAGCACGA
GTGTCGCGTGGGTGACGGTTCCTGACTGGTTCCCCCCCCGGGTGCAAACG
GCGCTCCAGGGACTGTTGCCTCTGTATGTGTTCAATTTCCTGGTTGGGTT
GCTCTTTTTGTGGTTTGCTGAACCTTTGTCGAGATCCACGATTTTCCATG
TCTTTTTGTCGGCCATTCTAGGGCTTTTCTCTGGGTTATTGCTGGCGGGC
GTGGTGTTGAATCAGATGATAAGGACGGTGAAGAAGTTGCAGCCTTTCTC
AGGGTTGGCGACGCTGATGACGAGTGTGGTGGGCGTGGTGGTGTATCACC
GGTTTAGGGGGGGGGCGGAGATATTGCTGTTGCTGGCAGGGGCTTTGAAG
GGCATGTGGGGGGATCGGTGGGGTCAGGCGTACTTGGTGGGCTCGGGCTT
GCTCGGGTGGGGGCTAGCGTGGGGGCTGGGATGGTGGGAGGAGACGGAGG
AAGAATGCAGGGAGAAGAGAGGGGGATGGATCAAAGCTTGGTTCAACGGC
CAGAGGAATATAAGGGTAGGGTTGACGGTGCTGGGGTTGAGTTTCTTGTG
GAGGAGTGTGCCGACGCCTACAATGAGGGTGGTGGTGGTGCTGCTGGTGC
TGCTGAGGGAATGGTGGGGTTATGCCTTGCACCGGTTGCATATGTACCGG
TATCGAAGTCCGGAGACGCATCGTTTTTTGGCGCGAGAGGGGAAGGAGCG
AGGGAGGGCTGGAGGGATGGGGCATAGGGCTAGGGGGGGGGATGAGGATG
ATGATATAGAGGAGGAAGAGGAGGAGGGGGACGATTATACGACGCGGGCG
TTGAGGGGATTGAGGACATATGTGCAGAAGAATCCGGAGAGTACGCACAG
GGTGAGGCATGGCCGGGGAGAGATGGAGAGATTCAAAGGAGGGGGCCCTG
ATTATGTGAGAGGCGATGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGG
AGGACAGGGAGGGGTTGTTGTGTGATGTAA
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protein sequence of jgi.p|Nanoce1779_2|565002

>mRNA_3241-protein ID=mRNA_3241-protein|Name=jgi.p|Nanoce1779_2|565002|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MRARLLPCLLLALALLAVTTTSASPFAEECLDTDLQAPPERGPKKVDVEA
RPHTPNVGDVMANVHRKMPAALPGWMGRIWSSVSHITAPHIRKLVHYGGE
VLRPGEDMAERCKKRRKPIVSGADTGTGDSSSSGSDTGLDACTLLDVSWS
LGQQLGNLGKNASAKTAWWLSQEVPRVALPFHLMWVELAVEVYPVTRADV
ASLILHQRPHFVVQLCDILSEYLVRALHSIPMLDFLINARYDLLYIPDAA
CPLTQVDGLIFRAPLTAEGFCEIRPCEHESSIAGQTAAGGVSPFCECDLT
KKRCRLRAQSLRDFQLLVDEPLASKTFDAQASTSVAWVTVPDWFPPRVQT
ALQGLLPLYVFNFLVGLLFLWFAEPLSRSTIFHVFLSAILGLFSGLLLAG
VVLNQMIRTVKKLQPFSGLATLMTSVVGVVVYHRFRGGAEILLLLAGALK
GMWGDRWGQAYLVGSGLLGWGLAWGLGWWEETEEECREKRGGWIKAWFNG
QRNIRVGLTVLGLSFLWRSVPTPTMRVVVVLLVLLREWWGYALHRLHMYR
YRSPETHRFLAREGKERGRAGGMGHRARGGDEDDDIEEEEEEGDDYTTRA
LRGLRTYVQKNPESTHRVRHGRGEMERFKGGGPDYVRGDEEEEEEEEEEG
RTGRGCCVM*
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mRNA from alignment at scaffold_7:986675..988654-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Nanoce1779_2|565002|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_7:986675..988654- (Nannochloropsis oceanica)
ATGAGGGCACGCCTCCTCCCCTGCCTCCTCCTTGCCCTCGCCCTCCTTGC
GGTTACAACCACTTCCGCCTCCCCTTTCGCAGAAGAATGCCTTGACACCG
ATCTACAAGCGCCCCCTGAACGAGGCCCAAAGAAAGTCGACGTGGAAGCT
CGCCCGCACACCCCCAATGTGGGAGATGTCATGGCCAACGTCCACCGCAA
AATGCCTGCGGCATTGCCCGGGTGGATGGGCAGGATCTGGTCTAGCGTCA
GCCATATCACTGCACCACACATCCGAAAACTAGTGCATTATGGCGGGGAA
GTCTTGCGCCCAGGTGAGGACATGGCAGAACGTTGCAAGAAGCGACGCAA
GCCAATCGTGTCTGGTGCAGACACGGGCACGGGTGACAGCAGCAGCAGCG
GTTCGGACACGGGTCTGGATGCCTGTACCTTGTTAGATGTGTCATGGTCC
TTGGGCCAACAGCTGGGTAATCTAGGTAAGAATGCGTCGGCTAAAACAGC
ATGGTGGCTCTCTCAGGAAGTGCCCCGTGTCGCACTCCCGTTTCACCTCA
TGTGGGTTGAGCTTGCCGTGGAAGTTTACCCTGTGACCAGAGCGGATGTC
GCCTCTCTCATCCTCCACCAGCGTCCTCACTTCGTGGTGCAGCTTTGTGA
TATTCTCTCAGAATACCTCGTCCGTGCGCTGCACAGCATTCCCATGCTTG
ATTTTTTGATCAATGCCCGCTATGATCTTCTTTATATCCCCGACGCTGCA
TGTCCCCTCACGCAAGTGGATGGCCTCATTTTTCGTGCCCCCCTGACCGC
CGAGGGCTTCTGCGAAATTCGTCCATGTGAGCACGAAAGCTCCATCGCCG
GACAAACGGCTGCTGGAGGCGTGAGCCCGTTTTGTGAGTGTGATTTGACG
AAGAAGCGCTGTCGCCTCCGGGCTCAATCGCTGAGGGATTTCCAACTCTT
GGTCGATGAGCCCTTAGCGAGCAAGACCTTTGACGCCCAGGCAAGCACGA
GTGTCGCGTGGGTGACGGTTCCTGACTGGTTCCCCCCCCGGGTGCAAACG
GCGCTCCAGGGACTGTTGCCTCTGTATGTGTTCAATTTCCTGGTTGGGTT
GCTCTTTTTGTGGTTTGCTGAACCTTTGTCGAGATCCACGATTTTCCATG
TCTTTTTGTCGGCCATTCTAGGGCTTTTCTCTGGGTTATTGCTGGCGGGC
GTGGTGTTGAATCAGATGATAAGGACGGTGAAGAAGTTGCAGCCTTTCTC
AGGGTTGGCGACGCTGATGACGAGTGTGGTGGGCGTGGTGGTGTATCACC
GGTTTAGGGGGGGGGCGGAGATATTGCTGTTGCTGGCAGGGGCTTTGAAG
GGCATGTGGGGGGATCGGTGGGGTCAGGCGTACTTGGTGGGCTCGGGCTT
GCTCGGGTGGGGGCTAGCGTGGGGGCTGGGATGGTGGGAGGAGACGGAGG
AAGAATGCAGGGAGAAGAGAGGGGGATGGATCAAAGCTTGGTTCAACGGC
CAGAGGAATATAAGGGTAGGGTTGACGGTGCTGGGGTTGAGTTTCTTGTG
GAGGAGTGTGCCGACGCCTACAATGAGGGTGGTGGTGGTGCTGCTGGTGC
TGCTGAGGGAATGGTGGGGTTATGCCTTGCACCGGTTGCATATGTACCGG
TATCGAAGTCCGGAGACGCATCGTTTTTTGGCGCGAGAGGGGAAGGAGCG
AGGGAGGGCTGGAGGGATGGGGCATAGGGCTAGGGGGGGGGATGAGGATG
ATGATATAGAGGAGGAAGAGGAGGAGGGGGACGATTATACGACGCGGGCG
TTGAGGGGATTGAGGACATATGTGCAGAAGAATCCGGAGAGTACGCACAG
GGTGAGGCATGGCCGGGGAGAGATGGAGAGATTCAAAGGAGGGGGCCCTG
ATTATGTGAGAGGCGATGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGG
AGGACAGGGAGGGGTTGTTGTGTGATGTAA
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Coding sequence (CDS) from alignment at scaffold_7:986675..988654-

>mRNA_3241 ID=mRNA_3241|Name=jgi.p|Nanoce1779_2|565002|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_7:986675..988654- (Nannochloropsis oceanica)
ATGAGGGCACGCCTCCTCCCCTGCCTCCTCCTTGCCCTCGCCCTCCTTGC
GGTTACAACCACTTCCGCCTCCCCTTTCGCAGAAGAATGCCTTGACACCG
ATCTACAAGCGCCCCCTGAACGAGGCCCAAAGAAAGTCGACGTGGAAGCT
CGCCCGCACACCCCCAATGTGGGAGATGTCATGGCCAACGTCCACCGCAA
AATGCCTGCGGCATTGCCCGGGTGGATGGGCAGGATCTGGTCTAGCGTCA
GCCATATCACTGCACCACACATCCGAAAACTAGTGCATTATGGCGGGGAA
GTCTTGCGCCCAGGTGAGGACATGGCAGAACGTTGCAAGAAGCGACGCAA
GCCAATCGTGTCTGGTGCAGACACGGGCACGGGTGACAGCAGCAGCAGCG
GTTCGGACACGGGTCTGGATGCCTGTACCTTGTTAGATGTGTCATGGTCC
TTGGGCCAACAGCTGGGTAATCTAGGTAAGAATGCGTCGGCTAAAACAGC
ATGGTGGCTCTCTCAGGAAGTGCCCCGTGTCGCACTCCCGTTTCACCTCA
TGTGGGTTGAGCTTGCCGTGGAAGTTTACCCTGTGACCAGAGCGGATGTC
GCCTCTCTCATCCTCCACCAGCGTCCTCACTTCGTGGTGCAGCTTTGTGA
TATTCTCTCAGAATACCTCGTCCGTGCGCTGCACAGCATTCCCATGCTTG
ATTTTTTGATCAATGCCCGCTATGATCTTCTTTATATCCCCGACGCTGCA
TGTCCCCTCACGCAAGTGGATGGCCTCATTTTTCGTGCCCCCCTGACCGC
CGAGGGCTTCTGCGAAATTCGTCCATGTGAGCACGAAAGCTCCATCGCCG
GACAAACGGCTGCTGGAGGCGTGAGCCCGTTTTGTGAGTGTGATTTGACG
AAGAAGCGCTGTCGCCTCCGGGCTCAATCGCTGAGGGATTTCCAACTCTT
GGTCGATGAGCCCTTAGCGAGCAAGACCTTTGACGCCCAGGCAAGCACGA
GTGTCGCGTGGGTGACGGTTCCTGACTGGTTCCCCCCCCGGGTGCAAACG
GCGCTCCAGGGACTGTTGCCTCTGTATGTGTTCAATTTCCTGGTTGGGTT
GCTCTTTTTGTGGTTTGCTGAACCTTTGTCGAGATCCACGATTTTCCATG
TCTTTTTGTCGGCCATTCTAGGGCTTTTCTCTGGGTTATTGCTGGCGGGC
GTGGTGTTGAATCAGATGATAAGGACGGTGAAGAAGTTGCAGCCTTTCTC
AGGGTTGGCGACGCTGATGACGAGTGTGGTGGGCGTGGTGGTGTATCACC
GGTTTAGGGGGGGGGCGGAGATATTGCTGTTGCTGGCAGGGGCTTTGAAG
GGCATGTGGGGGGATCGGTGGGGTCAGGCGTACTTGGTGGGCTCGGGCTT
GCTCGGGTGGGGGCTAGCGTGGGGGCTGGGATGGTGGGAGGAGACGGAGG
AAGAATGCAGGGAGAAGAGAGGGGGATGGATCAAAGCTTGGTTCAACGGC
CAGAGGAATATAAGGGTAGGGTTGACGGTGCTGGGGTTGAGTTTCTTGTG
GAGGAGTGTGCCGACGCCTACAATGAGGGTGGTGGTGGTGCTGCTGGTGC
TGCTGAGGGAATGGTGGGGTTATGCCTTGCACCGGTTGCATATGTACCGG
TATCGAAGTCCGGAGACGCATCGTTTTTTGGCGCGAGAGGGGAAGGAGCG
AGGGAGGGCTGGAGGGATGGGGCATAGGGCTAGGGGGGGGGATGAGGATG
ATGATATAGAGGAGGAAGAGGAGGAGGGGGACGATTATACGACGCGGGCG
TTGAGGGGATTGAGGACATATGTGCAGAAGAATCCGGAGAGTACGCACAG
GGTGAGGCATGGCCGGGGAGAGATGGAGAGATTCAAAGGAGGGGGCCCTG
ATTATGTGAGAGGCGATGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGGG
AGGACAGGGAGGGGTTGTTGTGTGATGTAA
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Synonyms
Publications