jgi.p|Nanoce1779_2|585046, mRNA_3240 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585046
Unique NamemRNA_3240
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length204
Alignment locationscaffold_7:985824..986027 +

Link to JBrowse

Properties
Property NameValue
TranscriptId585132
TrackFilteredModels2
ProteinId585046
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:985824..986027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585046gene_3240Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585046mRNA_3240-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3240CDS_3240Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3240 ID=mRNA_3240|Name=jgi.p|Nanoce1779_2|585046|organism=Nannochloropsis oceanica|type=mRNA|length=204bp
ATGTCAGATATCTTTCATTCTTCTTCATTTAATCCTTTCGGCGTTATCTT
TGTTGTTGTTGTTGTTGTTATTATTGTTATTCTCGTGTGTTGGTGTTGTT
CTTGTCCAGTCGGCTGGTGCCGCTGTAGGTGCTTTATCTTCTTTTTTTGT
GTGTGTGTTGCCTCGTCGGTTTCCGATGCCTTAGACCCTGCTTTGGCTCC
ATAG
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protein sequence of jgi.p|Nanoce1779_2|585046

>mRNA_3240-protein ID=mRNA_3240-protein|Name=jgi.p|Nanoce1779_2|585046|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MSDIFHSSSFNPFGVIFVVVVVVIIVILVCWCCSCPVGWCRCRCFIFFFC
VCVASSVSDALDPALAP*
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mRNA from alignment at scaffold_7:985824..986027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3240 ID=mRNA_3240|Name=jgi.p|Nanoce1779_2|585046|organism=Nannochloropsis oceanica|type=mRNA|length=204bp|location=Sequence derived from alignment at scaffold_7:985824..986027+ (Nannochloropsis oceanica)
ATGTCAGATATCTTTCATTCTTCTTCATTTAATCCTTTCGGCGTTATCTT
TGTTGTTGTTGTTGTTGTTATTATTGTTATTCTCGTGTGTTGGTGTTGTT
CTTGTCCAGTCGGCTGGTGCCGCTGTAGGTGCTTTATCTTCTTTTTTTGT
GTGTGTGTTGCCTCGTCGGTTTCCGATGCCTTAGACCCTGCTTTGGCTCC
ATAG
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Coding sequence (CDS) from alignment at scaffold_7:985824..986027+

>mRNA_3240 ID=mRNA_3240|Name=jgi.p|Nanoce1779_2|585046|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at scaffold_7:985824..986027+ (Nannochloropsis oceanica)
ATGTCAGATATCTTTCATTCTTCTTCATTTAATCCTTTCGGCGTTATCTT
TGTTGTTGTTGTTGTTGTTATTATTGTTATTCTCGTGTGTTGGTGTTGTT
CTTGTCCAGTCGGCTGGTGCCGCTGTAGGTGCTTTATCTTCTTTTTTTGT
GTGTGTGTTGCCTCGTCGGTTTCCGATGCCTTAGACCCTGCTTTGGCTCC
ATAG
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Synonyms
Publications