jgi.p|Nanoce1779_2|401372, mRNA_3239 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|401372
Unique Name	mRNA_3239
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1729
Alignment location	scaffold_7:983286..985701 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	401458
Track	FilteredModels2
ProteinId	401372

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:983286..985701 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|401372	gene_3239	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|401372	mRNA_3239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3239	CDS_3239	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:983286..985701+
coding sequence from alignment at scaffold_7:983286..985701+

mRNA sequence

>mRNA_3239 ID=mRNA_3239|Name=jgi.p|Nanoce1779_2|401372|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp
AAAATAGTCACACCCCACACATACACAGTTCGGCCTGCACCACTCCCCTT
CCTTACACACTGACTAACCTTTTCCATTCGACACTGCAAATACGCTTTTG
ATAAATCTTTACAGGCCGAATAATCCCGCTTGTTGCTCTCGATGCACCCC
AGGAATTCGTGAGCCACGGCTCGGCACTGCGAGTTTAAAGCCCATGCATT
CTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCTGCAGTGT
GCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGCACCTAAAACACC
AAGACGGCTCAGCAGCAGCAGCACAATCCCAACAAGATGGGACCCTCATG
TCATGGCAACCAACAGATCAGGCGGCATCTGGGAAGTGGACCTGACTCGC
GGGGAGAGCAATGGCAAGCGGTGCATCCTCCAACTGGCAGGGCCCGATGC
TCCCAAGCTTGTGCAAGGTCTAATCACGAACGACATTGTCCATTTGACCG
AAGCAAAAGCATCGTTGGCAGCGGCATTTTTGACGAATAAAGGACGGGTG
ATTACGGAGAGTGTCATAACCATTGCGACCGACGCCAAGGAAGCGCCGCA
TGGTGGCCCTGACAAATTCTTCCTAGACCTTCCTGTGGAGGTTAAAGAAG
GACTCCTCCGTCATTTGCGCCTGTTCAAACTTCGTGCCAAAGTGCAGATA
ACTGATCTGACGGCCACGGCGAGGGTGTGCGTGGTGCTGGGCTTGCCGGA
CGAGGTACTCGTGGATCTAGATGTGGTGAAGAAGCATTGGACAGGACGAG
GAGAAGAGGTCCTGGGGCTCGGACCCGACCCTCGGATTGCCTTGCCGGGA
CAACATCCTTTGGGCATTCGTGCAATCGTTACACCCTCCCCTGCCTTTCC
CTTTTTTTGCTCGCAGCAGCAACAGCAGGAGCACCAGCAGCAGCCACGCG
AAGTTTATGAGGCACTGCGTTTTTTGCATGGGGTTGGGGAAGGGCCAGAC
TTGGTTGAACGGTTGCCTTCGGAATGTAACCTCGATTTAACTCATGCCAT
TAATTTTCACAAAGGCTGCTACCTTGGGCAAGAGCTCACGGCCCGCACGC
AGTATAAGGGCGTGATTCGGAAGCGGGTGTTGCCTTTCTTCTTCCTTCCT
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCATCATCAGAAGCACTTCCAGTCGGTTCCTTT
TCTGATTTCCTCCCTTTTCCATCTGCTTGTCCTTTCATGGCTTCCCCACT
GATTCCCTGCAGTAGTAGCAGCAGCACCAGCAGTAAAGGTGCGAATATTG
TGGATGAAATTACGGGGAAGACTGTTGGGTCTATCGTATCTTGTGCCAAA
GGGAGCAATCTCGGCCTGGCACTTTTTCGACTTGAGCATATACTGGCAGG
CGGACCTAAGGTGCGTTTGGTGGTGGCTGGGAAGGGGAAGGTCGGAGGGG
AGGAGAGAGAGGAGAAGCAGATGGTGAGGGCGTTTTTGCCGCCGTGGTGG
CCGACGGCATTGGATTTAGCAACGGGGAAGGTGCGGGCCTGAAATTCGAG
GTGGAGGTGGAGGTGGAGGAGAGAGCAGAAAAAGAGGTGGAGATAAGGAG
GAGGAAGAGGGAGAGGAAGAGGAAGAGGT

protein sequence of jgi.p|Nanoce1779_2|401372

>mRNA_3239-protein ID=mRNA_3239-protein|Name=jgi.p|Nanoce1779_2|401372|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MHSSTSTTRRRVAASWLQCASASATAASILRAPKTPRRLSSSSTIPTRWD
PHVMATNRSGGIWEVDLTRGESNGKRCILQLAGPDAPKLVQGLITNDIVH
LTEAKASLAAAFLTNKGRVITESVITIATDAKEAPHGGPDKFFLDLPVEV
KEGLLRHLRLFKLRAKVQITDLTATARVCVVLGLPDEVLVDLDVVKKHWT
GRGEEVLGLGPDPRIALPGQHPLGIRAIVTPSPAFPFFCSQQQQQEHQQQ
PREVYEALRFLHGVGEGPDLVERLPSECNLDLTHAINFHKGCYLGQELTA
RTQYKGVIRKRVLPFFFLPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSEALPVGSFSDFLPFPSACPFMASPLIPCSSSSSTSSKGA
NIVDEITGKTVGSIVSCAKGSNLGLALFRLEHILAGGPKVRLVVAGKGKV
GGEEREEKQMVRAFLPPWWPTALDLATGKVRA*

mRNA from alignment at scaffold_7:983286..985701+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3239 ID=mRNA_3239|Name=jgi.p|Nanoce1779_2|401372|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp|location=Sequence derived from alignment at scaffold_7:983286..985701+ (Nannochloropsis oceanica)
AAAATAGTCACACCCCACACATACACAGTTCGGCCTGCACCACTCCCCTT
CCTTACACACTGACTAACCTTTTCCATTCGACACTGCAAATACGCTTTTG
ATAAATCTTTACAGGCCGAATAATCCCGCTTGTTGCTCTCGATGCACCCC
AGGAATTCGTGAGCCACGGCTCGGCACTGCGAGTTTAAAGGTAGGAGCGG
TATGATGAGTCGTTTGGACTTGAATGCTGGCACAGACATACGCAAGAAAG
CTGGTCACACGTGCTACGTCCTTTTTAATCTGCGATTCTGTCACTCTCGC
CAGGCCCTCCAAGGCGTCGTTTTTTTTGTACCCTTCCCTCAACTCCTTCC
CCTCGCCTCATATACCTGGCCTGCCCGGTCCAGCGGAAAGCTCCCCTTCT
CTGGTGGCTTCGCTTGGATACTTGCGCCGCCAAATGGATTCATGCGAAAT
GTCGAATCAAAGCCTATAGTTGTGGTGGTGCCGGGTGTAGTTGGGAATGA
GAATATGTGGCATCACAAGCAAGAGCCTCTTGCTAAGAGGACGAGGCGGG
TACTCGCTGATGAAGCAAGGATATGTGCCTTGGAAGCTCATTACATGCTG
CCTAAAAATACCCACGCCCCTTACATATACACCCCATCACATACCACGAC
ACAGCCCATGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGT
CCTGGCTGCAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGG
GTACGTGGCACTTTCATTCACCTTGAAAGAACCCGTCGCTCCGTCGTCGT
CCCGTCCAGGTCTTACACACTTCAGTCTAAAATGCTTGTCCTGATAGTAT
GGTTTCTCCTTCGAACAAGCCCCTGCTCCTCGAAAGTAAAACACTCCCTA
CTACCCTCTGCCCCGCCTCTGCCCACGAGCCATCATCTTCATCTTGTAAT
TTATCCCCTTAACACCTCCGTAGGCACCTAAAACACCAAGACGGCTCAGC
AGCAGCAGCACAATCCCAACAAGATGGGACCCTCATGTCATGGCAACCAA
CAGATCAGGCGGCATCTGGGAAGTGGACCTGACTCGCGGGGAGAGCAATG
GCAAGCGGTGCATCCTCCAACTGGCAGGGCCCGATGCTCCCAAGCTTGTG
CAAGGTCTAATCACGAACGACATTGTCCATTTGACCGAAGCAAAAGCATC
GTTGGCAGCGGCATTTTTGACGAATAAAGGACGGGTGATTACGGAGAGTG
TCATAACCATTGCGACCGACGCCAAGGAAGCGCCGCATGGTGGCCCTGAC
AAATTCTTCCTAGACCTTCCTGTGGAGGTTAAAGAAGGACTCCTCCGTCA
TTTGCGCCTGTTCAAACTTCGTGCCAAAGTGCAGATAACTGATCTGACGG
CCACGGCGAGGGTGTGCGTGGTGCTGGGCTTGCCGGACGAGGTACTCGTG
GATCTAGATGTGGTGAAGAAGCATTGGACAGGACGAGGAGAAGAGGTCCT
GGGGCTCGGACCCGACCCTCGGATTGCCTTGCCGGGACAACATCCTTTGG
GCATTCGTGCAATCGTTACACCCTCCCCTGCCTTTCCCTTTTTTTGCTCG
CAGCAGCAACAGCAGGAGCACCAGCAGCAGCCACGCGAAGTTTATGAGGC
ACTGCGTTTTTTGCATGGGGTTGGGGAAGGGCCAGACTTGGTTGAACGGT
TGCCTTCGGAATGTAACCTCGATTTAACTCATGCCATTAATTTTCACAAA
GGCTGCTACCTTGGGCAAGAGCTCACGGCCCGCACGCAGTATAAGGGCGT
GATTCGGAAGCGGGTGTTGCCTTTCTTCTTCCTTCCTTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCATCATCAGAAGCACTTCCAGTCGGTTCCTTTTCTGATTTCCTCC
CTTTTCCATCTGCTTGTCCTTTCATGGCTTCCCCACTGATTCCCTGCAGT
AGTAGCAGCAGCACCAGCAGTAAAGGTGCGAATATTGTGGATGAAATTAC
GGGGAAGACTGTTGGGTCTATCGTATCTTGTGCCAAAGGGAGCAATCTCG
GCCTGGCACTTTTTCGACTTGAGCATATACTGGCAGGCGGACCTAAGGTG
CGTTTGGTGGTGGCTGGGAAGGGGAAGGTCGGAGGGGAGGAGAGAGAGGA
GAAGCAGATGGTGAGGGCGTTTTTGCCGCCGTGGTGGCCGACGGCATTGG
ATTTAGCAACGGGGAAGGTGCGGGCCTGAAATTCGAGGTGGAGGTGGAGG
TGGAGGAGAGAGCAGAAAAAGAGGTGGAGATAAGGAGGAGGAAGAGGGAG
AGGAAGAGGAAGAGGT

Coding sequence (CDS) from alignment at scaffold_7:983286..985701+

>mRNA_3239 ID=mRNA_3239|Name=jgi.p|Nanoce1779_2|401372|organism=Nannochloropsis oceanica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_7:983286..985701+ (Nannochloropsis oceanica)
ATGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCT
GCAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGCACCTA
AAACACCAAGACGGCTCAGCAGCAGCAGCACAATCCCAACAAGATGGGAC
CCTCATGTCATGGCAACCAACAGATCAGGCGGCATCTGGGAAGTGGACCT
GACTCGCGGGGAGAGCAATGGCAAGCGGTGCATCCTCCAACTGGCAGGGC
CCGATGCTCCCAAGCTTGTGCAAGGTCTAATCACGAACGACATTGTCCAT
TTGACCGAAGCAAAAGCATCGTTGGCAGCGGCATTTTTGACGAATAAAGG
ACGGGTGATTACGGAGAGTGTCATAACCATTGCGACCGACGCCAAGGAAG
CGCCGCATGGTGGCCCTGACAAATTCTTCCTAGACCTTCCTGTGGAGGTT
AAAGAAGGACTCCTCCGTCATTTGCGCCTGTTCAAACTTCGTGCCAAAGT
GCAGATAACTGATCTGACGGCCACGGCGAGGGTGTGCGTGGTGCTGGGCT
TGCCGGACGAGGTACTCGTGGATCTAGATGTGGTGAAGAAGCATTGGACA
GGACGAGGAGAAGAGGTCCTGGGGCTCGGACCCGACCCTCGGATTGCCTT
GCCGGGACAACATCCTTTGGGCATTCGTGCAATCGTTACACCCTCCCCTG
CCTTTCCCTTTTTTTGCTCGCAGCAGCAACAGCAGGAGCACCAGCAGCAG
CCACGCGAAGTTTATGAGGCACTGCGTTTTTTGCATGGGGTTGGGGAAGG
GCCAGACTTGGTTGAACGGTTGCCTTCGGAATGTAACCTCGATTTAACTC
ATGCCATTAATTTTCACAAAGGCTGCTACCTTGGGCAAGAGCTCACGGCC
CGCACGCAGTATAAGGGCGTGATTCGGAAGCGGGTGTTGCCTTTCTTCTT
CCTTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCATCATCAGAAGCACTTCCAGTCGG
TTCCTTTTCTGATTTCCTCCCTTTTCCATCTGCTTGTCCTTTCATGGCTT
CCCCACTGATTCCCTGCAGTAGTAGCAGCAGCACCAGCAGTAAAGGTGCG
AATATTGTGGATGAAATTACGGGGAAGACTGTTGGGTCTATCGTATCTTG
TGCCAAAGGGAGCAATCTCGGCCTGGCACTTTTTCGACTTGAGCATATAC
TGGCAGGCGGACCTAAGGTGCGTTTGGTGGTGGCTGGGAAGGGGAAGGTC
GGAGGGGAGGAGAGAGAGGAGAAGCAGATGGTGAGGGCGTTTTTGCCGCC
GTGGTGGCCGACGGCATTGGATTTAGCAACGGGGAAGGTGCGGGCCTGAA
TGCATTCTTCCACCTCTACGACAAGACGGAGAGTAGCTGCGTCCTGGCTG
CAGTGTGCCAGTGCGTCCGCCACAGCGGCTTCAATTTTACGGGCACCTAA
AACACCAAGACGGCTCAGCAGCAGCAGCACAATCCCAACAAGATGGGACC
CTCATGTCATGGCAACCAACAGATCAGGCGGCATCTGGGAAGTGGACCTG
ACTCGCGGGGAGAGCAATGGCAAGCGGTGCATCCTCCAACTGGCAGGGCC
CGATGCTCCCAAGCTTGTGCAAGGTCTAATCACGAACGACATTGTCCATT
TGACCGAAGCAAAAGCATCGTTGGCAGCGGCATTTTTGACGAATAAAGGA
CGGGTGATTACGGAGAGTGTCATAACCATTGCGACCGACGCCAAGGAAGC
GCCGCATGGTGGCCCTGACAAATTCTTCCTAGACCTTCCTGTGGAGGTTA
AAGAAGGACTCCTCCGTCATTTGCGCCTGTTCAAACTTCGTGCCAAAGTG
CAGATAACTGATCTGACGGCCACGGCGAGGGTGTGCGTGGTGCTGGGCTT
GCCGGACGAGGTACTCGTGGATCTAGATGTGGTGAAGAAGCATTGGACAG
GACGAGGAGAAGAGGTCCTGGGGCTCGGACCCGACCCTCGGATTGCCTTG
CCGGGACAACATCCTTTGGGCATTCGTGCAATCGTTACACCCTCCCCTGC
CTTTCCCTTTTTTTGCTCGCAGCAGCAACAGCAGGAGCACCAGCAGCAGC
CACGCGAAGTTTATGAGGCACTGCGTTTTTTGCATGGGGTTGGGGAAGGG
CCAGACTTGGTTGAACGGTTGCCTTCGGAATGTAACCTCGATTTAACTCA
TGCCATTAATTTTCACAAAGGCTGCTACCTTGGGCAAGAGCTCACGGCCC
GCACGCAGTATAAGGGCGTGATTCGGAAGCGGGTGTTGCCTTTCTTCTTC
CTTCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCATCATCAGAAGCACTTCCAGTCGGT
TCCTTTTCTGATTTCCTCCCTTTTCCATCTGCTTGTCCTTTCATGGCTTC
CCCACTGATTCCCTGCAGTAGTAGCAGCAGCACCAGCAGTAAAGGTGCGA
ATATTGTGGATGAAATTACGGGGAAGACTGTTGGGTCTATCGTATCTTGT
GCCAAAGGGAGCAATCTCGGCCTGGCACTTTTTCGACTTGAGCATATACT
GGCAGGCGGACCTAAGGTGCGTTTGGTGGTGGCTGGGAAGGGGAAGGTCG
GAGGGGAGGAGAGAGAGGAGAAGCAGATGGTGAGGGCGTTTTTGCCGCCG
TGGTGGCCGACGGCATTGGATTTAGCAACGGGGAAGGTGCGGGCCTGA

Synonyms

Publications