jgi.p|Nanoce1779_2|585041, mRNA_3238 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585041
Unique NamemRNA_3238
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length584
Alignment locationscaffold_7:982869..983680 -

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Properties
Property NameValue
TranscriptId585127
TrackFilteredModels2
ProteinId585041
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:982869..983680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585041gene_3238Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585041mRNA_3238-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3238CDS_3238Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Nanoce1779_2|585041|organism=Nannochloropsis oceanica|type=mRNA|length=584bp
GGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTATATGAGGCGAGGGGAAG
GAGTTGAGGGAAGGGTACAAAAAAAACGACGCCTTGGAGGGCCTGGCGAG
AGTGACAGAATCGCAGATTAAAAAGGACGTAGCACGTGTGACCAGCTTTC
TTGCGTATGTCTGTGCCAGCATTCAAGTCCAAACGACTCATCATACCGCT
CCTACCTTTAAACTCGCAGTGCCGAGCCGTGGCTCACGAATTCCTGGGGT
GCATCGAGAGCAACAAGCGGGATTATTCGGCCTGTAAAGATTTATCAAAA
GCGTATTTGCAGTGTCGAATGGAAAAGAATCTGATGCAAAAGGAAGACTT
GAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAGAGGAGGCCAAGG
AGGACAAGACCAGAGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAG
GGCTTTGTGGGTGGCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTC
TTGAGCGAGGTGTGTACAAAGAGCGTGTAGGCGGATAAATTGTATTACAA
ACCAGAAAGAAAATCAAAGCATATGGCATTTCAA
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protein sequence of jgi.p|Nanoce1779_2|585041

>mRNA_3238-protein ID=mRNA_3238-protein|Name=jgi.p|Nanoce1779_2|585041|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MSVPAFKSKRLIIPLLPLNSQCRAVAHEFLGCIESNKRDYSACKDLSKAY
LQCRMEKNLMQKEDLSKLGFEEKREGQEEAKEDKTRDEKFYDRKREAEGF
VGGTGVKGSRKGYFS*
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mRNA from alignment at scaffold_7:982869..983680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Nanoce1779_2|585041|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at scaffold_7:982869..983680- (Nannochloropsis oceanica)
GGGAGCTTTCCGCTGGACCGGGCAGGCCAGGTATATGAGGCGAGGGGAAG
GAGTTGAGGGAAGGGTACAAAAAAAACGACGCCTTGGAGGGCCTGGCGAG
AGTGACAGAATCGCAGATTAAAAAGGACGTAGCACGTGTGACCAGCTTTC
TTGCGTATGTCTGTGCCAGCATTCAAGTCCAAACGACTCATCATACCGCT
CCTACCTTTAAACTCGCAGTGCCGAGCCGTGGCTCACGAATTCCTGGGGT
GCATCGAGAGCAACAAGCGGGATTATTCGGCCTGTAAAGATTTATCAAAA
GCGTATTTGCAGTGTCGAATGGAAAAGGTTAGTCAGTGTGTAAGGAAGGG
GAGTGGTGCAGGCCGAACTGTGTATGTGTGGGGTGTGACTATTTTAGAAT
ATCTGACAAACGCCAAAGTGACGGACAGGTGCACTAATTCACGGTCTCCC
TGCAACACTTTAATTATGATAGAATCTGATGCAAAAGGAAGACTTGAGCA
AGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAGAGGAGGCCAAGGAGGAC
AAGACCAGGTACGTAGGAAATGAATTAGATAAGGCATTTCAGAAAAGGAA
AATGCTAATTCCAACCCCCTCACTTGTCGTTTTTTGAACAGAGATGAGAA
ATTTTACGATCGGAAGCGAGAAGCGGAGGGCTTTGTGGGTGGCACCGGGG
TCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAGCGAGGTGTGTACAAAGA
GCGTGTAGGCGGATAAATTGTATTACAAACCAGAAAGAAAATCAAAGCAT
ATGGCATTTCAA
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Coding sequence (CDS) from alignment at scaffold_7:982869..983680-

>mRNA_3238 ID=mRNA_3238|Name=jgi.p|Nanoce1779_2|585041|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_7:982869..983680- (Nannochloropsis oceanica)
AGATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTTTGTGGGTG
GCACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAAATCTGATG
CAAAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCA
AGAGGAGGCCAAGGAGGACAAGACCAGATGTCTGTGCCAGCATTCAAGTC
CAAACGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCG
TGGCTCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCG
GCCTGTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGAG
ATGAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTTTGTGGGTGGC
ACCGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAAATCTGATGCA
AAAGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAG
AGGAGGCCAAGGAGGACAAGACCAGATGTCTGTGCCAGCATTCAAGTCCA
AACGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTG
GCTCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGC
CTGTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAGAGAT
GAGAAATTTTACGATCGGAAGCGAGAAGCGGAGGGCTTTGTGGGTGGCAC
CGGGGTCAAGGGCTCGCGCAAAGGCTATTTTTCTTGAAATCTGATGCAAA
AGGAAGACTTGAGCAAGCTCGGCTTCGAGGAAAAGCGAGAAGGGCAAGAG
GAGGCCAAGGAGGACAAGACCAGATGTCTGTGCCAGCATTCAAGTCCAAA
CGACTCATCATACCGCTCCTACCTTTAAACTCGCAGTGCCGAGCCGTGGC
TCACGAATTCCTGGGGTGCATCGAGAGCAACAAGCGGGATTATTCGGCCT
GTAAAGATTTATCAAAAGCGTATTTGCAGTGTCGAATGGAAAAG
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Synonyms
Publications