Properties
| Property Name | Value |
|---|
| TranscriptId | 553934 |
| Track | FilteredModels2 |
| ProteinId | 553848 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:979470..982292 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3237 ID=mRNA_3237|Name=jgi.p|Nanoce1779_2|553848|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp
ATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCCATC
GGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTGCCA
CCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAACATC
ACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCCCTC
CTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGGCCT
TTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCGTCG
CTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATCAGC
AGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGCGTC
CAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACCCTA
TTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCCCAG
CCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGGAGAAAGGG
GAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGATTAT
TTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGGTTAT
TGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATCTCCA
ATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTTCCAG
GGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCCCCTC
CTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCCACAA
CCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTCCTTC
TCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCTCCTC
CTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATGGACA
TCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATACTTA
AAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCGAGGG
CGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGGTTGA
ATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATTGAGG
AAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAGTGGG
AGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAAGGAA
TTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCTGCTA
CTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGAAGGG
TGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAAAAGA
ATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATATTCA
CAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAAATAT
TTGAAGCAGAAAGAACGCGTCGCTGTTTAATTGTTCCAGAAATCGGCCGC
TGAAGTCGCACGGCTCTCCTGCTCGTATTGTAGTGTATTTTCTCTTCTTT
CTTTCTTTCTTTCGCTTCTCCTTCACCCTCCAACCCCACGAGCAGGTACA
GGTGCAAATATTCTCATGCGAACCAAGAAAGGAAATACCCTCCGCCTCTC
CTTCTTACGCTTTCTCCCTACCCCAACTCCTCACTCTGTCGTCTAATCCC
TGCTCCTGTCCCTCCTGCTCCTCCTCGCTTTCTCCCTCTCTCGCCTCTCC
ACCCGCCGCGTCTGACGCTCATAAGAGAATCAGCATGCATGTGCCGAAGA
TGAGATAGCGAAGAGAAGATAAGTTATAGCCGTACGAAAAAAATAGCAGT
GACAGCAGCCGTATGGCTCGATCTGTGTGAGAAGTCCTTTAGAGGCCAAG
CTTGGTGCGGCGCCAGTGACGCCTCTTGGCGTTGTAGCGAATCGTGTTGC
CGGTGCGAAGGCGGGTCCAGTAAGGGATGGGTCGGTTCTGGTTTTGCTTC
TTGGCAAGTGTCCGCTTAGTGCGGAATGTCTTCTGGGAAGGCTGTAGTTG
GTGGTGAAAAGGAGAAGGGATGGTAAGACGGATGCCAATGAAAGGCGCGC
TGATGAGCACGATCCGTCTCACGACATGCGGATCCCATCCCTGCCACACA
ACCACCAACATTTCCATTTCGTCTTATATCCTTCCAAACGTACCATCTTT
TCCAAGGAAACCAGCAGTTGTAGGACCACCTGCTTTTACGAGTACCGTGA
TGGGGGTGCGTGGAAGAGATATGAGGTGGGGAAGGTGATGAGAAAGTGAG
GGTGACTTTCGTGAAGATGCTTGAGACTCCGCATCGCTTCTGCAGCTCCA
CCAATACCGGCTGAATACACAATATGTGGTAGGTCGTGAGTCATCGCGTG
CGAGGTTATGATGGTCACAACAAGGCCGACCAGCATGATGAGGCGAGGAG
GAAAGAACTGGGAGGACAGACGAGGCTTTCTCTCGCCTACACCATCCAAA
ACCTCTTCAAACCGGCGCAACAATCTTCTCAGCCACTGAGCAACGGATAC
TACATCAATGCGTGTCATCTCTATACCTGAGTGCACGGGATGCGTGAAGG
TGCGAGTCATGCCTAAAGACAAAATGAGAGGAAGCATCAAGTCGATGAGG
ACCATCAATACGGCGAGACGGG back to topprotein sequence of jgi.p|Nanoce1779_2|553848 >mRNA_3237-protein ID=mRNA_3237-protein|Name=jgi.p|Nanoce1779_2|553848|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MKNSATTLLVPGSTVPSASIHSLDHLTTASTTATLDYRQDGNRNAEDQNI
TQQTSTPASELLKYFPSSPAPPRHTWEGTPASAFNVRGPAYKRTGRKQPS
LDSFYSLVSFDFVKTSAGCVNHVARFMGLELLRPARCYPGFPPLFIVNTL
LPDGEPAIFSSVEGGPSRSAIFVFALKASTGERGRGREALPPSLLLLQDY
FRRAPYDAEVRGRFKVIASCANLDGLNLPSFISNYNGKPVLITNSGRLFQ
GYSSSSSSSSSSSSSPSFSSSSPISLSYPSFPTTINTTTTISPSCSSSSF
SCPSSSSFLTSSSGSSSSPLSTSSSELLYLEMDINVHCFAFLAKKGLKYL
KTKFPSMVLEMAFLIEGGRDEELPEQVLGAARLNFMEYEKAVDGVFDGLR
KEEREG* back to topmRNA from alignment at scaffold_7:979470..982292- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3237 ID=mRNA_3237|Name=jgi.p|Nanoce1779_2|553848|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at scaffold_7:979470..982292- (Nannochloropsis oceanica)
ATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCCATC
GGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTGCCA
CCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAACATC
ACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCCCTC
CTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGGCCT
TTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCGTCG
CTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATCAGC
AGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGCGTC
CAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACCCTA
TTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCCCAG
CCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACTTGC
TTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAAAGG
GGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGATTA
TTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGGTTA
TTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATCTCC
AATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTTCCA
GGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCCCCT
CCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCCACA
ACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTCCTT
CTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCTCCT
CCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATGGAC
ATCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATACTT
AAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCGAGG
GCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGGTTG
AATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATTGAG
GAAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAGTGG
GAGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAAGGA
ATTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCTGCT
ACTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGAAGG
GTGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAAAAG
AATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATATTC
ACAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAAATA
TTTGAAGCAGAAAGAACGCGTCGCTGTTTAATTGTTCCAGAAATCGGCCG
CTGAAGTCGCACGGCTCTCCTGCTCGTATTGTAGTGTATTTTCTCTTCTT
TCTTTCTTTCTTTCGCTTCTCCTTCACCCTCCAACCCCACGAGCAGGTAC
AGGTGCAAATATTCTCATGCGAACCAAGAAAGGAAATACCCTCCGCCTCT
CCTTCTTACGCTTTCTCCCTACCCCAACTCCTCACTCTGTCGTCTAATCC
CTGCTCCTGTCCCTCCTGCTCCTCCTCGCTTTCTCCCTCTCTCGCCTCTC
CACCCGCCGCGTCTGACGCTCATAAGAGAATCAGCATGCATGTGCCGAAG
ATGAGATAGCGAAGAGAAGATAAGTTATAGCCGTACGAAAAAAATAGCAG
TGACAGCAGCCGTATGGCTCGATCTGTGTGAGAAGTCCTTTAGAGGCCAA
GCTTGGTGCGGCGCCAGTGACGCCTCTTGGCGTTGTAGCGAATCGTGTTG
CCGGTGCGAAGGCGGGTCCAGTAAGGGATGGGTCGGTTCTGGTTTTGCTT
CTTGGCAAGTGTCCGCTTAGTGCGGAATGTCTTCTGGGAAGGCTGTAGTT
GGTGGTGAAAAGGAGAAGGGATGGTAAGACGGATGCCAATGAAAGGCGCG
CTGATGAGCACGATCCGTCTCACGACATGCGGATCCCATCCCTGCCACAC
AACCACCAACATTTCCATTTCGTCTTATATCCTTCCAAACGTACCATCTT
TTCCAAGGAAACCAGCAGTTGTAGGACCACCTGCTTTTACGAGTACCGTG
ATGGGGGTGCGTGGAAGAGATATGAGGTGGGGAAGGTGATGAGAAAGTGA
GGGTGACTTTCGTGAAGATGCTTGAGACTCCGCATCGCTTCTGCAGCTCC
ACCAATACCGGCTGAATACACAATATGTGGTAGGTCGTGAGTCATCGCGT
GCGAGGTTATGATGGTCACAACAAGGCCGACCAGCATGATGAGGCGAGGA
GGAAAGAACTGGGAGGACAGACGAGGCTTTCTCTCGCCTACACCATCCAA
AACCTCTTCAAACCGGCGCAACAATCTTCTCAGCCACTGAGCAACGGATA
CTACATCAATGCGTGTCATCTCTATACCTGAGTGCACGGGATGCGTGAAG
GTGCGAGTCATGCCTAAAGACAAAATGAGAGGAAGCATCAAGTCGATGAG
GACCATCAATACGGCGAGACGGG back to topCoding sequence (CDS) from alignment at scaffold_7:979470..982292- >mRNA_3237 ID=mRNA_3237|Name=jgi.p|Nanoce1779_2|553848|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_7:979470..982292- (Nannochloropsis oceanica)
GGAGAAAGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTT
GCAAGATTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGT
TTAAGGTTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCT
TTCATCTCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCG
CCTCTTCCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCT
CCTCCCCCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCT
TTTCCCACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTC
CTCCTCCTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTG
GTTCCTCCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTA
GAAATGGACATCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCT
CAAATACTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTC
TGATCGAGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCA
GCGAGGTTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGA
CGGATTGAGGAAAGAGGAGAGAGAGGGCTAGATGAAAAACAGTGCGACTA
CATTACTTGTGCCGGGATCCACTGTGCCATCGGCCTCAATTCACTCCCTG
GATCACCTGACCACGGCCTCTACCACTGCCACCCTGGACTATAGACAAGA
CGGCAATCGCAATGCCGAGGACCAAAACATCACACAGCAAACATCAACAC
CTGCGTCTGAGCTTTTGAAATATTTTCCCTCCTCTCCTGCACCCCCGAGA
CACACCTGGGAGGGCACGCCTGCCTCGGCCTTTAATGTCCGCGGACCCGC
ATACAAGCGCACAGGGCGAAAACAACCGTCGCTCGATTCGTTTTACAGCT
TGGTTTCCTTCGACTTTGTCAAAACATCAGCAGGCTGCGTCAATCACGTT
GCACGTTTCATGGGCTTGGAACTATTGCGTCCAGCCAGGTGCTACCCTGG
GTTTCCTCCTCTCTTTATCGTCAACACCCTATTGCCTGATGGCGAGCCGG
CCATATTTAGTAGCGTTGAGGGTGGGCCCAGCCGAAGTGCGATCTTTGTG
TTTGCTTTGAAGGCGTCCACCGGAGAAAGGGGAAGAGGTAGGGAAGCATT
GCCTCCATCTCTATTGCTCTTGCAAGATTATTTTCGAAGGGCACCGTACG
ATGCGGAGGTGCGGGGGAGGTTTAAGGTTATTGCCAGTTGTGCAAATCTG
GATGGATTGAATTTACCTTCTTTCATCTCCAATTATAATGGTAAACCAGT
CTTGATCACTAACAGTGGTCGCCTCTTCCAGGGCTACTCCTCCTCGTCCT
CCTCGTCCTCCTCCTCGTCCTCCTCCCCCTCCTTTTCTTCTTCCTCTCCT
ATATCTCTCTCCTACCCTTCTTTTCCCACAACCATTAATACCACCACCAC
AATCTCCCCCTCCTGCTCCTCCTCCTCCTTCTCCTGCCCCTCCTCCTCCT
CCTTTTTAACCTCCTCCTCTGGTTCCTCCTCCTCCCCTCTCTCTACTTCC
TCGTCTGAATTGCTTTACCTAGAAATGGACATCAACGTCCATTGTTTCGC
GTTCCTGGCCAAGAAGGGGCTCAAATACTTAAAAACGAAGTTCCCCTCCA
TGGTGCTAGAAATGGCGTTTCTGATCGAGGGCGGAAGAGATGAAGAGTTG
CCAGAGCAAGTGTTGGGAGCAGCGAGGTTGAATTTTATGGAATACGAGAA
GGCGGTGGATGGGGTGTTTGACGGATTGAGGAAAGAGGAGAGAGAGGGCT
AGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCCA
TCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTGC
CACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAACA
TCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCCC
TCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGGC
CTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCGT
CGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATCA
GCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGCG
TCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACCC
TATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCCC
AGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACC back to top
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