jgi.p|Nanoce1779_2|585033, mRNA_3236 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585033
Unique Name	mRNA_3236
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1821
Alignment location	scaffold_7:979470..981290 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585119
Track	FilteredModels2
ProteinId	585033

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:979470..981290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585033	gene_3236	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585033	mRNA_3236-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3236	CDS_3236	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:979470..981290+
coding sequence from alignment at scaffold_7:979470..981290+

mRNA sequence

>mRNA_3236 ID=mRNA_3236|Name=jgi.p|Nanoce1779_2|585033|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
CCCGTCTCGCCGTATTGATGGTCCTCATCGACTTGATGCTTCCTCTCATT
TTGTCTTTAGGCATGACTCGCACCTTCACGCATCCCGTGCACTCAGGTAT
AGAGATGACACGCATTGATGTAGTATCCGTTGCTCAGTGGCTGAGAAGAT
TGTTGCGCCGGTTTGAAGAGGTTTTGGATGGTGTAGGCGAGAGAAAGCCT
CGTCTGTCCTCCCAGTTCTTTCCTCCTCGCCTCATCATGCTGGTCGGCCT
TGTTGTGACCATCATAACCTCGCACGCGATGACTCACGACCTACCACATA
TTGTGTATTCAGCCGGTATTGGTGGAGCTGCAGAAGCGATGCGGAGTCTC
AAGCATCTTCACGAAAGTCACCCTCACTTTCTCATCACCTTCCCCACCTC
ATATCTCTTCCACGCACCCCCATCACGGTACTCGTAAAAGCAGGTGGTCC
TACAACTGCTGGTTTCCTTGGAAAAGATGGTACGTTTGGAAGGATATAAG
ACGAAATGGAAATGTTGGTGGTTGTGTGGCAGGGATGGGATCCGCATGTC
GTGAGACGGATCGTGCTCATCAGCGCGCCTTTCATTGGCATCCGTCTTAC
CATCCCTTCTCCTTTTCACCACCAACTACAGCCTTCCCAGAAGACATTCC
GCACTAAGCGGACACTTGCCAAGAAGCAAAACCAGAACCGACCCATCCCT
TACTGGACCCGCCTTCGCACCGGCAACACGATTCGCTACAACGCCAAGAG
GCGTCACTGGCGCCGCACCAAGCTTGGCCTCTAAAGGACTTCTCACACAG
ATCGAGCCATACGGCTGCTGTCACTGCTATTTTTTTCGTACGGCTATAAC
TTATCTTCTCTTCGCTATCTCATCTTCGGCACATGCATGCTGATTCTCTT
ATGAGCGTCAGACGCGGCGGGTGGAGAGGCGAGAGAGGGAGAAAGCGAGG
AGGAGCAGGAGGGACAGGAGCAGGGATTAGACGACAGAGTGAGGAGTTGG
GGTAGGGAGAAAGCGTAAGAAGGAGAGGCGGAGGGTATTTCCTTTCTTGG
TTCGCATGAGAATATTTGCACCTGTACCTGCTCGTGGGGTTGGAGGGTGA
AGGAGAAGCGAAAGAAAGAAAGAAAGAAGAGAAAATACACTACAATACGA
GCAGGAGAGCCGTGCGACTTCAGCGGCCGATTTCTGGAACAATTAAACAG
CGACGCGTTCTTTCTGCTTCAAATATTTCTCTGATTTCCTTGCTTTTCCT
GTACATGCTGCTTGCGACTTTGTGAATATACCAAAAAAATAAGTCCCGAC
CCTCTTTCCCTCCTCGTCTCATTCTTTTCCTCCTCGCCCTCTCGACAGAA
TACACCACTGCTTTCCCCGTCACCCTTCATTTATCCATACACTTACCTCT
CACACAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCTGCAGATACGGCCAC
TTATCGCCTGCTAGGTATCGAATTCCTTCTACCAAATCCTCACTACAAGT
CCTTCATCTCCCTCCATCTCCTCCCACTCTTCCTCCTCCCCCTCCCTCCC
CCTAGCCCTCTCTCTCCTCTTTCCTCAATCCGTCAAACACCCCATCCACC
GCCTTCTCGTATTCCATAAAATTCAACCTCGCTGCTCCCAACACTTGCTC
TGGCAACTCTTCATCTCTTCCGCCCTCGATCAGAAACGCCATTTCTAGCA
CCATGGAGGGGAACTTCGTTTTTAAGTATTTGAGCCCCTTCTTGGCCAGG
AACGCGAAACAATGGACGTTGATGTCCATTTCTAGGTAAAGCAATTCAGA
CGAGGAAGTAGAGAGAGGGGA

protein sequence of jgi.p|Nanoce1779_2|585033

>mRNA_3236-protein ID=mRNA_3236-protein|Name=jgi.p|Nanoce1779_2|585033|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MEMLVVVWQGWDPHVVRRIVLISAPFIGIRLTIPSPFHHQLQPSQKTFRT
KRTLAKKQNQNRPIPYWTRLRTGNTIRYNAKRRHWRRTKLGL*

mRNA from alignment at scaffold_7:979470..981290+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3236 ID=mRNA_3236|Name=jgi.p|Nanoce1779_2|585033|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at scaffold_7:979470..981290+ (Nannochloropsis oceanica)
CCCGTCTCGCCGTATTGATGGTCCTCATCGACTTGATGCTTCCTCTCATT
TTGTCTTTAGGCATGACTCGCACCTTCACGCATCCCGTGCACTCAGGTAT
AGAGATGACACGCATTGATGTAGTATCCGTTGCTCAGTGGCTGAGAAGAT
TGTTGCGCCGGTTTGAAGAGGTTTTGGATGGTGTAGGCGAGAGAAAGCCT
CGTCTGTCCTCCCAGTTCTTTCCTCCTCGCCTCATCATGCTGGTCGGCCT
TGTTGTGACCATCATAACCTCGCACGCGATGACTCACGACCTACCACATA
TTGTGTATTCAGCCGGTATTGGTGGAGCTGCAGAAGCGATGCGGAGTCTC
AAGCATCTTCACGAAAGTCACCCTCACTTTCTCATCACCTTCCCCACCTC
ATATCTCTTCCACGCACCCCCATCACGGTACTCGTAAAAGCAGGTGGTCC
TACAACTGCTGGTTTCCTTGGAAAAGATGGTACGTTTGGAAGGATATAAG
ACGAAATGGAAATGTTGGTGGTTGTGTGGCAGGGATGGGATCCGCATGTC
GTGAGACGGATCGTGCTCATCAGCGCGCCTTTCATTGGCATCCGTCTTAC
CATCCCTTCTCCTTTTCACCACCAACTACAGCCTTCCCAGAAGACATTCC
GCACTAAGCGGACACTTGCCAAGAAGCAAAACCAGAACCGACCCATCCCT
TACTGGACCCGCCTTCGCACCGGCAACACGATTCGCTACAACGCCAAGAG
GCGTCACTGGCGCCGCACCAAGCTTGGCCTCTAAAGGACTTCTCACACAG
ATCGAGCCATACGGCTGCTGTCACTGCTATTTTTTTCGTACGGCTATAAC
TTATCTTCTCTTCGCTATCTCATCTTCGGCACATGCATGCTGATTCTCTT
ATGAGCGTCAGACGCGGCGGGTGGAGAGGCGAGAGAGGGAGAAAGCGAGG
AGGAGCAGGAGGGACAGGAGCAGGGATTAGACGACAGAGTGAGGAGTTGG
GGTAGGGAGAAAGCGTAAGAAGGAGAGGCGGAGGGTATTTCCTTTCTTGG
TTCGCATGAGAATATTTGCACCTGTACCTGCTCGTGGGGTTGGAGGGTGA
AGGAGAAGCGAAAGAAAGAAAGAAAGAAGAGAAAATACACTACAATACGA
GCAGGAGAGCCGTGCGACTTCAGCGGCCGATTTCTGGAACAATTAAACAG
CGACGCGTTCTTTCTGCTTCAAATATTTCTCTGATTTCCTTGCTTTTCCT
GTACATGCTGCTTGCGACTTTGTGAATATACCAAAAAAATAAGTCCCGAC
CCTCTTTCCCTCCTCGTCTCATTCTTTTCCTCCTCGCCCTCTCGACAGAA
TACACCACTGCTTTCCCCGTCACCCTTCATTTATCCATACACTTACCTCT
CACACAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCTGCAGATACGGCCAC
TTATCGCCTGCTAGGTATCGAATTCCTTCTACCAAATCCTCACTACAAGT
CCTTCATCTCCCTCCATCTCCTCCCACTCTTCCTCCTCCCCCTCCCTCCC
CCTAGCCCTCTCTCTCCTCTTTCCTCAATCCGTCAAACACCCCATCCACC
GCCTTCTCGTATTCCATAAAATTCAACCTCGCTGCTCCCAACACTTGCTC
TGGCAACTCTTCATCTCTTCCGCCCTCGATCAGAAACGCCATTTCTAGCA
CCATGGAGGGGAACTTCGTTTTTAAGTATTTGAGCCCCTTCTTGGCCAGG
AACGCGAAACAATGGACGTTGATGTCCATTTCTAGGTAAAGCAATTCAGA
CGAGGAAGTAGAGAGAGGGGA

Coding sequence (CDS) from alignment at scaffold_7:979470..981290+

>mRNA_3236 ID=mRNA_3236|Name=jgi.p|Nanoce1779_2|585033|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_7:979470..981290+ (Nannochloropsis oceanica)
ATGGAAATGTTGGTGGTTGTGTGGCAGGGATGGGATCCGCATGTCGTGAG
ACGGATCGTGCTCATCAGCGCGCCTTTCATTGGCATCCGTCTTACCATCC
CTTCTCCTTTTCACCACCAACTACAGCCTTCCCAGAAGACATTCCGCACT
AAGCGGACACTTGCCAAGAAGCAAAACCAGAACCGACCCATCCCTTACTG
GACCCGCCTTCGCACCGGCAACACGATTCGCTACAACGCCAAGAGGCGTC
ACTGGCGCCGCACCAAGCTTGGCCTCTAA

Synonyms

Publications