jgi.p|Nanoce1779_2|401364, mRNA_3235 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|401364
Unique NamemRNA_3235
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_7:979465..980296 +

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Properties
Property NameValue
TranscriptId401450
TrackFilteredModels2
ProteinId401364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:979465..980296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401364gene_3235Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|401364mRNA_3235-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3235CDS_3235Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3235 ID=mRNA_3235|Name=jgi.p|Nanoce1779_2|401364|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
ACCCGCCCGTCTCGCCGTATTGATGGTCCTCATCGACTTGATGCTTCCTC
TCATTTTGTCTTTAGGCATGACTCGCACCTTCACGCATCCCGTGCACTCA
GGTATAGAGATGACACGCATTGATGTAGTATCCGTTGCTCAGTGGCTGAG
AAGATTGTTGCGCCGGTTTGAAGAGGTTTTGGATGGTGTAGGCGAGAGAA
AGCCTCGTCTGTCCTCCCAGTTCTTTCCTCCTCGCCTCATCATGCTGGTC
GGCCTTGTTGTGACCATCATAACCTCGCACGCGATGACTCACGACCTACC
ACATATTGTGTATTCAGCCGGTATTGGTGGAGCTGCAGAAGCGATGCGGA
GTCTCAAGCATCTTCACGAAAGTCACCCTCACTTTCTCATCACCTTCCCC
ACCTCATATCTCTTCCACGCACCCCCATCACGGTACTCGTAAAAGCAGGT
GGTCCTACAACTGCTGGTTTCCTTGGAAAAGATGGTACGTTTGGAAGGAT
ATAAGACGAAATGGAAATGTTGGTGGTTGTGTGGCAGGGATGGGATCCGC
ATGTCGTGAGACGGATCGTGCTCATCAGCGCGCCTTTCATTGGCATCCGT
CTTACCATCCCTTCTCCTTTTCACCACCAACTACAGCCTTCCCAGAAGAC
ATTCCGCACTAAGCGGACACTTGCCAAGAAGCAAAACCAGAACCGACCCA
TCCCTTACTGGACCCGCCTTCGCACCGGCAACACGATTCGCTACAACGCC
AAGAGGCGTCACTGGCGCCGCACCAAGCTTGGCCTCTAAAGGACTTCTCA
CACAGATCGAGCCATACGGCTGCTGTCACTGC
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protein sequence of jgi.p|Nanoce1779_2|401364

>mRNA_3235-protein ID=mRNA_3235-protein|Name=jgi.p|Nanoce1779_2|401364|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MVLIDLMLPLILSLGMTRTFTHPVHSGIEMTRIDVVSVAQWLRRLLRRFE
EVLDGVGERKPRLSSQFFPPRLIMLVGLVVTIITSHAMTHDLPHIVYSAG
IGGAAEAMRSLKHLHESHPHFLITFPTSYLFHAPPSRYS*
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mRNA from alignment at scaffold_7:979465..980296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3235 ID=mRNA_3235|Name=jgi.p|Nanoce1779_2|401364|organism=Nannochloropsis oceanica|type=mRNA|length=832bp|location=Sequence derived from alignment at scaffold_7:979465..980296+ (Nannochloropsis oceanica)
ACCCGCCCGTCTCGCCGTATTGATGGTCCTCATCGACTTGATGCTTCCTC
TCATTTTGTCTTTAGGCATGACTCGCACCTTCACGCATCCCGTGCACTCA
GGTATAGAGATGACACGCATTGATGTAGTATCCGTTGCTCAGTGGCTGAG
AAGATTGTTGCGCCGGTTTGAAGAGGTTTTGGATGGTGTAGGCGAGAGAA
AGCCTCGTCTGTCCTCCCAGTTCTTTCCTCCTCGCCTCATCATGCTGGTC
GGCCTTGTTGTGACCATCATAACCTCGCACGCGATGACTCACGACCTACC
ACATATTGTGTATTCAGCCGGTATTGGTGGAGCTGCAGAAGCGATGCGGA
GTCTCAAGCATCTTCACGAAAGTCACCCTCACTTTCTCATCACCTTCCCC
ACCTCATATCTCTTCCACGCACCCCCATCACGGTACTCGTAAAAGCAGGT
GGTCCTACAACTGCTGGTTTCCTTGGAAAAGATGGTACGTTTGGAAGGAT
ATAAGACGAAATGGAAATGTTGGTGGTTGTGTGGCAGGGATGGGATCCGC
ATGTCGTGAGACGGATCGTGCTCATCAGCGCGCCTTTCATTGGCATCCGT
CTTACCATCCCTTCTCCTTTTCACCACCAACTACAGCCTTCCCAGAAGAC
ATTCCGCACTAAGCGGACACTTGCCAAGAAGCAAAACCAGAACCGACCCA
TCCCTTACTGGACCCGCCTTCGCACCGGCAACACGATTCGCTACAACGCC
AAGAGGCGTCACTGGCGCCGCACCAAGCTTGGCCTCTAAAGGACTTCTCA
CACAGATCGAGCCATACGGCTGCTGTCACTGC
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Coding sequence (CDS) from alignment at scaffold_7:979465..980296+

>mRNA_3235 ID=mRNA_3235|Name=jgi.p|Nanoce1779_2|401364|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_7:979465..980296+ (Nannochloropsis oceanica)
ATGGTCCTCATCGACTTGATGCTTCCTCTCATTTTGTCTTTAGGCATGAC
TCGCACCTTCACGCATCCCGTGCACTCAGGTATAGAGATGACACGCATTG
ATGTAGTATCCGTTGCTCAGTGGCTGAGAAGATTGTTGCGCCGGTTTGAA
GAGGTTTTGGATGGTGTAGGCGAGAGAAAGCCTCGTCTGTCCTCCCAGTT
CTTTCCTCCTCGCCTCATCATGCTGGTCGGCCTTGTTGTGACCATCATAA
CCTCGCACGCGATGACTCACGACCTACCACATATTGTGTATTCAGCCGGT
ATTGGTGGAGCTGCAGAAGCGATGCGGAGTCTCAAGCATCTTCACGAAAG
TCACCCTCACTTTCTCATCACCTTCCCCACCTCATATCTCTTCCACGCAC
CCCCATCACGGTACTCGTAA
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Synonyms
Publications