jgi.p|Nanoce1779_2|585019, mRNA_3234 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585019
Unique NamemRNA_3234
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length909
Alignment locationscaffold_7:977497..978532 +

Link to JBrowse

Properties
Property NameValue
TranscriptId585105
TrackFilteredModels2
ProteinId585019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:977497..978532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585019gene_3234Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585019mRNA_3234-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3234CDS_3234Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Nanoce1779_2|585019|organism=Nannochloropsis oceanica|type=mRNA|length=909bp
ACAGACAGTTTCGTACGCTCAAATAATGGCTTCCGCCGCCAAGACAACCG
TCTCTACCCCGGGCTCCAACGTCTTCCTTGCCTTTGCCATCCACTTTTAT
GCCTGGTTCCTCGGCAGCTTTGTCCTTGTCTTGGCCAATGCCATCCACCT
TTTTTTGCCGCCTTGGTGTGTCATTCCCATTGCTGGCTGGGGCATGGGTA
CGTACAAGCTGGGTCGGGGAGTTGGGAGTCTATTGAGTCTGCTAGTTGTT
TATGTTCCTGATATCATCAGTCATAAATGTCTGCAGTTCTGTCACTTTCA
CATTCATATAACACCTTATTCTGTAGCGCGATCTTCTTTCTCTTTTATAT
GTTCAATCACTTATCCCATTCTCTTCCTCCTTCCATCCCTCCCTTAAGGC
CTGGGCATCCACGCCGTCGTAACATACTTCATCGTGGACAAGATGGGAGG
CAACTTCAAGATGTTGATTGACCAATACATTCTGAAGCTTGTACCCAAAC
CTATCATGGATCAGGTGGAGGCCAAAATGAAGTGAATCGGCAGCAGCAGC
TGTGGTTGTAAGGAAAGAAGGAGTGGCAGTGGCAGTTTGATTTTTTGATA
GAAGGACCGAGAGTTGGAGGGGGAATTATAGGGATAGAGAAGGCGATGAT
GGAAATTGGAAACAGTGGTCAGAAGTAACAGAGAACAATTTCTTCTGCCT
CCTCTTCATTGAAAGTCTCACCTTTTCCGTCCGTCATGCGTTGGTGTCTT
TGTAGCATACTGATTTTTGGTTTTTGTTTCTTCGTACAAATGTGGTTTAG
CTAGTGGAGAAGCAATGATGCCATATGCAAAGGCGAAGTAATCCTTGTGC
GAGGGGCTTGAGGCCCGAACAAACAGAAGGAAATAAAAACAAGGAGAAAC
AAGTTTTCA
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protein sequence of jgi.p|Nanoce1779_2|585019

>mRNA_3234-protein ID=mRNA_3234-protein|Name=jgi.p|Nanoce1779_2|585019|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MASAAKTTVSTPGSNVFLAFAIHFYAWFLGSFVLVLANAIHLFLPPWCVI
PIAGWGMGTYKLGRGVGSLLSLLVVYVPDIISHKCLQFCHFHIHITPYSV
ARSSFSFICSITYPILFLLPSLP*
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mRNA from alignment at scaffold_7:977497..978532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Nanoce1779_2|585019|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp|location=Sequence derived from alignment at scaffold_7:977497..978532+ (Nannochloropsis oceanica)
ACAGACAGTTTCGTACGCTCAAATAATGGCTTCCGCCGCCAAGACAACCG
TCTCTACCCCGGGCTCCAACGTCTTCCTTGCCTTTGCCATCCACTTTTAT
GCCTGGTTCCTCGGCAGGTAAATCATGAGGTGCACGAATTACAGTGGTGC
TCGTGTCTTTTTCCTTCCCCCACGGCTCCGTCGACTTGATGGCTCATATG
TCTCTCCCTTCTCTCCTGTCCCTCGACACACATCAACTCCACAGCTTTGT
CCTTGTCTTGGCCAATGCCATCCACCTTTTTTTGCCGCCTTGGTGTGTCA
TTCCCATTGCTGGCTGGGGCATGGGTACGTACAAGCTGGGTCGGGGAGTT
GGGAGTCTATTGAGTCTGCTAGTTGTTTATGTTCCTGATATCATCAGTCA
TAAATGTCTGCAGTTCTGTCACTTTCACATTCATATAACACCTTATTCTG
TAGCGCGATCTTCTTTCTCTTTTATATGTTCAATCACTTATCCCATTCTC
TTCCTCCTTCCATCCCTCCCTTAAGGCCTGGGCATCCACGCCGTCGTAAC
ATACTTCATCGTGGACAAGATGGGAGGCAACTTCAAGATGTTGATTGACC
AATACATTCTGAAGCTTGTACCCAAACCTATCATGGATCAGGTGGAGGCC
AAAATGAAGTGAATCGGCAGCAGCAGCTGTGGTTGTAAGGAAAGAAGGAG
TGGCAGTGGCAGTTTGATTTTTTGATAGAAGGACCGAGAGTTGGAGGGGG
AATTATAGGGATAGAGAAGGCGATGATGGAAATTGGAAACAGTGGTCAGA
AGTAACAGAGAACAATTTCTTCTGCCTCCTCTTCATTGAAAGTCTCACCT
TTTCCGTCCGTCATGCGTTGGTGTCTTTGTAGCATACTGATTTTTGGTTT
TTGTTTCTTCGTACAAATGTGGTTTAGCTAGTGGAGAAGCAATGATGCCA
TATGCAAAGGCGAAGTAATCCTTGTGCGAGGGGCTTGAGGCCCGAACAAA
CAGAAGGAAATAAAAACAAGGAGAAACAAGTTTTCA
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Coding sequence (CDS) from alignment at scaffold_7:977497..978532+

>mRNA_3234 ID=mRNA_3234|Name=jgi.p|Nanoce1779_2|585019|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_7:977497..978532+ (Nannochloropsis oceanica)
ATGGCTTCCGCCGCCAAGACAACCGTCTCTACCCCGGGCTCCAACGTCTT
CCTTGCCTTTGCCATCCACTTTTATGCCTGGTTCCTCGGCAGCTTTGTCC
TTGTCTTGGCCAATGCCATCCACCTTTTTTTGCCGCCTTGGTGTGTCATT
CCCATTGCTGGCTGGGGCATGGGTACGTACAAGCTGGGTCGGGGAGTTGG
GAGTCTATTGAGTCTGCTAGTTGTTTATGTTCCTGATATCATCAGTCATA
AATGTCTGCAGTTCTGTCACTTTCACATTCATATAACACCTTATTCTGTA
GCGCGATCTTCTTTCTCTTTTATATGTTCAATCACTTATCCCATTCTCTT
CCTCCTTCCATCCCTCCCTTAAATGGCTTCCGCCGCCAAGACAACCGTCT
CTACCCCGGGCTCCAACGTCTTCCTTGCCTTTGCCATCCACTTTTATGCC
TGGTTCCTCGGCAGCTTTGTCCTTGTCTTGGCCAATGCCATCCACCTTTT
TTTGCCGCCTTGGTGTGTCATTCCCATTGCTGGCTGGGGCATGGGTACGT
ACAAGCTGGGTCGGGGAGTTGGGAGTCTATTGAGTCTGCTAGTTGTTTAT
GTTCCTGATATCATCAGTCATAAATGTCTGCAGTTCTGTCACTTTCACAT
TCATATAACACCTTATTCTGTAGCGCGATCTTCTTTCTCTTTTATATGTT
CAATCACTTATCCCATTCTCTTCCTCCTTCCATCCCTCCCTTAA
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Synonyms
Publications