jgi.p|Nanoce1779_2|540328, mRNA_3233 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|540328
Unique NamemRNA_3233
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1488
Alignment locationscaffold_7:974940..976816 -

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Properties
Property NameValue
TranscriptId540414
TrackFilteredModels2
ProteinId540328
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:974940..976816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540328gene_3233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540328mRNA_3233-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3233CDS_3233Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3233 ID=mRNA_3233|Name=jgi.p|Nanoce1779_2|540328|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
CAGCAACAGGATCACCGCCTCCTCCCGTCGTTGACCTTCCCCATCTACAG
AATCACCATGAAGACTGCTCTCGTGCTCATAACGACTGCTGCCTCCCTCA
GCTGCACGCTGGCCTTTGTGCCGCTTGTCCCTGTTAATCAGCGGCAAAGA
TCAGCTGTCCGCATGATGGCCGCCACGAAACCCAAGCCCCCGACCGGCGG
CGTGGACGACAAGACCGAAGTCCGCGAATACTTTAACACCGAGGGGTTCC
AACGCTGGAACCGCATATACAGCGAAGATGGGACAGTGAACAAGGTGCAA
GCAGACATTCGTGTGGGGCACCAACAAACCGTCGATAAAATCTTGGGGTG
GCTCGAAGCGGACGGAGTGAAGGGGGAGAGCATTTGCGATGCAGGCTGTG
GGGTCGGGTCCTTGGCCATTCCCATGGCTAAGCTTGGAGCCAAGGTCTCA
GCGTCGGATATCAGTTCCTCGATGGCAAACGAGGGAAAGCTGAGGGCTGA
GGCCGTGTTGGGGAAGGCTACGGCCAGGGCGCGTTGTGCGTTCTCAACCA
GTGACTTGGAGGCATTAAAGGGGAAATACGACACCGTGACCTGTGTGGAT
GTGATGATTCACTATCCCACTGACAAGATGCAGGGGATGGTGAGCAAGCT
GGGTTCATTGGCAAAGAAGAGGATGATTATTTCTTTTGCTCCCAAGACTT
GGTACTACGACATCTTGAAGCAGATCGGTGGGCTTTTCCCCGGGCCGAGT
AAAACAACCCGTGCGTATTTGCACACCGAGGCAGATGTTCGCAAGGCTTT
GGAAGAGGCAGGATTCACGGTGAAGCGTACGGACATGACGGCGACCAACT
TTTATTTTTCGCGGTTGTTGGAGGCGGTGCGTGAATAAAGTGGAAGGAGA
GAGTCAAAGCCTTGGGTTAGGCGGGGGAAGATGGACGAATGGAAGGAAAA
GGGCGGGGGGAGGGGGGATTGCCTTGACAATTTTGAAAGGGGAGACACCA
GATGCTCCAGATTAAGACAGAAAAAAAAGGGGATGGGCATCGTGCTTGTG
CAGGCCGATGGGTAGGATGGAGGAAGGGGGATAGAGTAGAGGAGATGCGG
GCCAGGAAGGCAGGGACAATCAATTGCTTCACAAAGCATGTCACCAACTA
AATTACTACAAGCATTCAGCTGCATTAAAAAATGGACACCTTTTGATGTT
GCTGAATATCATTTCTCGTACGTTTCGCTGCCGCTTATCATGGGGGCTCT
GTGAGATCAACCCTCGAGCTGCTGTGAGGGTTCATTTTTCGTATTGTCTG
TACTGTGCGCACTGAGTTAGCCAGTGATGGAAAGTAATGCGGTTGAGGGG
GGAACGCCATGAAAAAAGTCATGCACGTTATCTATCCTATGACAAACTCA
TGAGTAATAAAGCAACCAATGAAACCTGTCTCGAGGCCAACCTCCCCCAC
CTCGATCGACGGCCCTTCTTCTCCTTCTACCTTCCCTT
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protein sequence of jgi.p|Nanoce1779_2|540328

>mRNA_3233-protein ID=mRNA_3233-protein|Name=jgi.p|Nanoce1779_2|540328|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKTALVLITTAASLSCTLAFVPLVPVNQRQRSAVRMMAATKPKPPTGGVD
DKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLE
ADGVKGESICDAGCGVGSLAIPMAKLGAKVSASDISSSMANEGKLRAEAV
LGKATARARCAFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGS
LAKKRMIISFAPKTWYYDILKQIGGLFPGPSKTTRAYLHTEADVRKALEE
AGFTVKRTDMTATNFYFSRLLEAVRE*
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mRNA from alignment at scaffold_7:974940..976816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3233 ID=mRNA_3233|Name=jgi.p|Nanoce1779_2|540328|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp|location=Sequence derived from alignment at scaffold_7:974940..976816- (Nannochloropsis oceanica)
CAGCAACAGGATCACCGCCTCCTCCCGTCGTTGACCTTCCCCATCTACAG
AATCACCATGAAGACTGCTCTCGTGCTCATAACGACTGCTGCCTCCCTCA
GCTGCACGCTGGCCTTTGTGCCGCTTGTCCCTGTTAATCAGCGGCAAAGA
TCAGCTGTCCGGTACGTGAAGATGATGAAGAGATGGTTGAAGGGCAGAGA
AGTGCCAGAGGGAATGGTTCAGCAAGAAACCTCGACTTAGCAAGCATGAA
AGTAAAGTTCGATCTATCCCCCAGAACTGGCATTGTAAGGGCTACCAAAC
GCGTTTGTGTGATACTGAAAGGCGAAGTGTAACATAACGCTTCTCCTCCT
CATGGTCTAACGCTGCCGTGCTTCATATTCATTGTTTGTGCGAGTGGGAG
GGCTCGGAACAAATAGCCCTGCCTCGGTTCGATCTATTGCTAGTCAGCCA
ACATTCCCCATATAAGACCTGAAAGCCCTCTTCAAAACTCCCTCAGTCTC
ATCCCAAATCACTCACTGCTTTTATCTTTGATATCTCTGCCTAATCGCAG
CATGATGGCCGCCACGAAACCCAAGCCCCCGACCGGCGGCGTGGACGACA
AGACCGAAGTCCGCGAATACTTTAACACCGAGGGGTTCCAACGCTGGAAC
CGCATATACAGCGAAGATGGGACAGTGAACAAGGTGCAAGCAGACATTCG
TGTGGGGCACCAACAAACCGTCGATAAAATCTTGGGGTGGCTCGAAGCGG
ACGGAGTGAAGGGGGAGAGCATTTGCGATGCAGGCTGTGGGGTCGGGTCC
TTGGCCATTCCCATGGCTAAGCTTGGAGCCAAGGTCTCAGCGTCGGATAT
CAGTTCCTCGATGGCAAACGAGGGAAAGCTGAGGGCTGAGGCCGTGTTGG
GGAAGGCTACGGCCAGGGCGCGTTGTGCGTTCTCAACCAGTGACTTGGAG
GCATTAAAGGGGAAATACGACACCGTGACCTGTGTGGATGTGATGATTCA
CTATCCCACTGACAAGATGCAGGGGATGGTGAGCAAGCTGGGTTCATTGG
CAAAGAAGAGGATGATTATTTCTTTTGCTCCCAAGACTTGGTACTACGAC
ATCTTGAAGCAGATCGGTGGGCTTTTCCCCGGGCCGAGTAAAACAACCCG
TGCGTATTTGCACACCGAGGCAGATGTTCGCAAGGCTTTGGAAGAGGCAG
GATTCACGGTGAAGCGTACGGACATGACGGCGACCAACTTTTATTTTTCG
CGGTTGTTGGAGGCGGTGCGTGAATAAAGTGGAAGGAGAGAGTCAAAGCC
TTGGGTTAGGCGGGGGAAGATGGACGAATGGAAGGAAAAGGGCGGGGGGA
GGGGGGATTGCCTTGACAATTTTGAAAGGGGAGACACCAGATGCTCCAGA
TTAAGACAGAAAAAAAAGGGGATGGGCATCGTGCTTGTGCAGGCCGATGG
GTAGGATGGAGGAAGGGGGATAGAGTAGAGGAGATGCGGGCCAGGAAGGC
AGGGACAATCAATTGCTTCACAAAGCATGTCACCAACTAAATTACTACAA
GCATTCAGCTGCATTAAAAAATGGACACCTTTTGATGTTGCTGAATATCA
TTTCTCGTACGTTTCGCTGCCGCTTATCATGGGGGCTCTGTGAGATCAAC
CCTCGAGCTGCTGTGAGGGTTCATTTTTCGTATTGTCTGTACTGTGCGCA
CTGAGTTAGCCAGTGATGGAAAGTAATGCGGTTGAGGGGGGAACGCCATG
AAAAAAGTCATGCACGTTATCTATCCTATGACAAACTCATGAGTAATAAA
GCAACCAATGAAACCTGTCTCGAGGCCAACCTCCCCCACCTCGATCGACG
GCCCTTCTTCTCCTTCTACCTTCCCTT
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Coding sequence (CDS) from alignment at scaffold_7:974940..976816-

>mRNA_3233 ID=mRNA_3233|Name=jgi.p|Nanoce1779_2|540328|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_7:974940..976816- (Nannochloropsis oceanica)
CATGATGGCCGCCACGAAACCCAAGCCCCCGACCGGCGGCGTGGACGACA
AGACCGAAGTCCGCGAATACTTTAACACCGAGGGGTTCCAACGCTGGAAC
CGCATATACAGCGAAGATGGGACAGTGAACAAGGTGCAAGCAGACATTCG
TGTGGGGCACCAACAAACCGTCGATAAAATCTTGGGGTGGCTCGAAGCGG
ACGGAGTGAAGGGGGAGAGCATTTGCGATGCAGGCTGTGGGGTCGGGTCC
TTGGCCATTCCCATGGCTAAGCTTGGAGCCAAGGTCTCAGCGTCGGATAT
CAGTTCCTCGATGGCAAACGAGGGAAAGCTGAGGGCTGAGGCCGTGTTGG
GGAAGGCTACGGCCAGGGCGCGTTGTGCGTTCTCAACCAGTGACTTGGAG
GCATTAAAGGGGAAATACGACACCGTGACCTGTGTGGATGTGATGATTCA
CTATCCCACTGACAAGATGCAGGGGATGGTGAGCAAGCTGGGTTCATTGG
CAAAGAAGAGGATGATTATTTCTTTTGCTCCCAAGACTTGGTACTACGAC
ATCTTGAAGCAGATCGGTGGGCTTTTCCCCGGGCCGAGTAAAACAACCCG
TGCGTATTTGCACACCGAGGCAGATGTTCGCAAGGCTTTGGAAGAGGCAG
GATTCACGGTGAAGCGTACGGACATGACGGCGACCAACTTTTATTTTTCG
CGGTTGTTGGAGGCGGTGCGTGAATAAATGAAGACTGCTCTCGTGCTCAT
AACGACTGCTGCCTCCCTCAGCTGCACGCTGGCCTTTGTGCCGCTTGTCC
CTGTTAATCAGCGGCAAAGATCAGCTGTCCGCATGATGGCCGCCACGAAA
CCCAAGCCCCCGACCGGCGGCGTGGACGACAAGACCGAAGTCCGCGAATA
CTTTAACACCGAGGGGTTCCAACGCTGGAACCGCATATACAGCGAAGATG
GGACAGTGAACAAGGTGCAAGCAGACATTCGTGTGGGGCACCAACAAACC
GTCGATAAAATCTTGGGGTGGCTCGAAGCGGACGGAGTGAAGGGGGAGAG
CATTTGCGATGCAGGCTGTGGGGTCGGGTCCTTGGCCATTCCCATGGCTA
AGCTTGGAGCCAAGGTCTCAGCGTCGGATATCAGTTCCTCGATGGCAAAC
GAGGGAAAGCTGAGGGCTGAGGCCGTGTTGGGGAAGGCTACGGCCAGGGC
GCGTTGTGCGTTCTCAACCAGTGACTTGGAGGCATTAAAGGGGAAATACG
ACACCGTGACCTGTGTGGATGTGATGATTCACTATCCCACTGACAAGATG
CAGGGGATGGTGAGCAAGCTGGGTTCATTGGCAAAGAAGAGGATGATTAT
TTCTTTTGCTCCCAAGACTTGGTACTACGACATCTTGAAGCAGATCGGTG
GGCTTTTCCCCGGGCCGAGTAAAACAACCCGTGCGTATTTGCACACCGAG
GCAGATGTTCGCAAGGCTTTGGAAGAGGCAGGATTCACGGTGAAGCGTAC
GGACATGACGGCGACCAACTTTTATTTTTCGCGGTTGTTGGAGGCGGTGC
GTGAATAAATGAAGACTGCTCTCGTGCTCATAACGACTGCTGCCTCCCTC
AGCTGCACGCTGGCCTTTGTGCCGCTTGTCCCTGTTAATCAGCGGCAAAG
ATCAGCTGTCCG
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Synonyms
Publications