jgi.p|Nanoce1779_2|622992, mRNA_3232 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622992
Unique NamemRNA_3232
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1494
Alignment locationscaffold_7:972930..974423 -

Link to JBrowse

Properties
Property NameValue
TranscriptId623078
TrackFilteredModels2
ProteinId622992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:972930..974423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622992gene_3232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3232CDS_3232Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622992mRNA_3232-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3232 ID=mRNA_3232|Name=jgi.p|Nanoce1779_2|622992|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAAAAAATGGACTA
CAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGTGCCGACGGCGT
TGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACGTAGGACATGAG
GGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAGCGGCAAGCGGA
AGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGTCCCGTTGACAG
AAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAGGGTCAAAACTC
CAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATGTTATCGACCGG
GCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGTGGGGTATGCGC
AGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATAAGATGTTGACA
CACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTGTTGAAGGTTTG
TGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGGGAAGAAGGTGG
AGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGTTGGTCCTGGAG
CCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTTGCAACCGCAGC
GACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGTAGTCATAGACA
ACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATTCCATCGATCTC
ACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAAGAGCTGGTCCT
CGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAAGTCCTGGTTGG
AGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGTTTGATGTGGTG
GTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTACGCCCAGGCGCC
TTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGAGCATTTTGAAA
GGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGCACGTGGACGAC
CGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGGTGGAGGGAGAG
GGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGACTGGTTTTGGT
TGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGGTCACCAACGAC
GAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGGACGTTTTTGCG
GTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGGCCACGAGAGGG
GGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGTATTCGAGATGT
ATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAGGAGGGAGGGGA
GTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGATGTGTGTGCAGG
TACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGAAGTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|622992

>mRNA_3232-protein ID=mRNA_3232-protein|Name=jgi.p|Nanoce1779_2|622992|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MKKLLASDPAAAEKMDYRRRVGMARRDDDVPTALQLFTDIQARNIDVGHE
GFNALIALLTTFERQAEAEAVLTYMREKHVPLTEATYVSMMRALALGSKL
QKPEAAEALLDEMLSTGQRPRLRSYSPIVVGYAQQGKINAAFQLYDKMLT
HKIEPTEVELVALLKVCGEARREGGKEGGGKKVEERFYRVMREMQELVLE
PGEGAWEAMKEWFATAATPAAEEVKVTSGVVIDNKGVCGECGQVLDSIDL
TSQASGELLTMVEELVLAEPARAGDWEMFKSWLEGGRESARTGWPEFDVV
VDGANVGYFQMNYAQAPSHVNYEQISWVVEHFERRGKRPLLVLHARHVDD
RKIPPEYVGLVRGWRERGLLLVVPYRNNDDWFWLFTTVFKGGRTLLVTND
EMRDHHFQMLSQRTFLRWKERHQAYFSFGGHERGGGRSVKIEAPAVYSRC
IQGPRSMKEGSGKEGGESWHLPKAGSEEWMCVQVRRKDGEEGVNEEK*
back to top

mRNA from alignment at scaffold_7:972930..974423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3232 ID=mRNA_3232|Name=jgi.p|Nanoce1779_2|622992|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at scaffold_7:972930..974423- (Nannochloropsis oceanica)
ATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAAAAAATGGACTA
CAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGTGCCGACGGCGT
TGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACGTAGGACATGAG
GGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAGCGGCAAGCGGA
AGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGTCCCGTTGACAG
AAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAGGGTCAAAACTC
CAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATGTTATCGACCGG
GCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGTGGGGTATGCGC
AGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATAAGATGTTGACA
CACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTGTTGAAGGTTTG
TGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGGGAAGAAGGTGG
AGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGTTGGTCCTGGAG
CCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTTGCAACCGCAGC
GACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGTAGTCATAGACA
ACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATTCCATCGATCTC
ACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAAGAGCTGGTCCT
CGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAAGTCCTGGTTGG
AGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGTTTGATGTGGTG
GTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTACGCCCAGGCGCC
TTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGAGCATTTTGAAA
GGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGCACGTGGACGAC
CGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGGTGGAGGGAGAG
GGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGACTGGTTTTGGT
TGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGGTCACCAACGAC
GAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGGACGTTTTTGCG
GTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGGCCACGAGAGGG
GGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGTATTCGAGATGT
ATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAGGAGGGAGGGGA
GTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGATGTGTGTGCAGG
TACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGAAGTAA
back to top

Coding sequence (CDS) from alignment at scaffold_7:972930..974423-

>mRNA_3232 ID=mRNA_3232|Name=jgi.p|Nanoce1779_2|622992|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_7:972930..974423- (Nannochloropsis oceanica)
ATGAAAAAACTCCTTGCGTCCGACCCGGCTGCGGCTGAAAAAATGGACTA
CAGGCGGCGTGTTGGCATGGCACGGCGCGATGATGATGTGCCGACGGCGT
TGCAGCTTTTTACGGACATCCAAGCGCGGAACATTGACGTAGGACATGAG
GGATTTAACGCCCTGATTGCTTTGCTCACCACCTTTGAGCGGCAAGCGGA
AGCAGAAGCTGTGCTCACATACATGCGGGAGAAACACGTCCCGTTGACAG
AAGCGACTTATGTGTCAATGATGCGTGCCTTGGCTTTAGGGTCAAAACTC
CAAAAACCGGAGGCAGCCGAAGCATTGTTGGATGAAATGTTATCGACCGG
GCAAAGACCACGATTAAGGTCGTACAGCCCTATTGTGGTGGGGTATGCGC
AGCAAGGAAAGATCAATGCAGCGTTTCAATTGTATGATAAGATGTTGACA
CACAAGATTGAACCGACCGAAGTGGAGCTGGTGGCGTTGTTGAAGGTTTG
TGGGGAGGCAAGGAGGGAGGGTGGGAAGGAGGGAGGAGGGAAGAAGGTGG
AGGAGAGGTTTTATCGGGTGATGCGCGAGATGCAGGAGTTGGTCCTGGAG
CCGGGAGAAGGAGCGTGGGAGGCCATGAAAGAATGGTTTGCAACCGCAGC
GACACCAGCAGCAGAAGAAGTGAAAGTAACGAGTGGCGTAGTCATAGACA
ACAAGGGGGTGTGTGGTGAGTGCGGCCAGGTCCTGGATTCCATCGATCTC
ACCTCCCAAGCATCTGGAGAGTTGTTGACGATGGTAGAAGAGCTGGTCCT
CGCCGAACCCGCCCGTGCGGGGGACTGGGAGATGTTTAAGTCCTGGTTGG
AGGGAGGGAGGGAGAGCGCAAGGACGGGATGGCCCGAGTTTGATGTGGTG
GTGGATGGAGCGAACGTGGGGTATTTTCAGATGAATTACGCCCAGGCGCC
TTCACATGTAAATTACGAGCAGATCTCTTGGGTGGTGGAGCATTTTGAAA
GGCGAGGTAAAAGGCCCTTGTTGGTATTGCATGCGCGGCACGTGGACGAC
CGAAAGATCCCGCCTGAGTACGTGGGGCTGGTCCGGGGGTGGAGGGAGAG
GGGGTTGTTGCTGGTAGTGCCTTACCGGAATAATGACGACTGGTTTTGGT
TGTTTACGACCGTGTTTAAGGGGGGGAGGACGCTGCTGGTCACCAACGAC
GAGATGCGTGACCATCACTTTCAGATGTTGTCCCAGCGGACGTTTTTGCG
GTGGAAGGAGCGGCACCAAGCGTATTTCTCGTTTGGAGGCCACGAGAGGG
GGGGAGGGAGAAGTGTGAAGATCGAGGCGCCAGCTGTGTATTCGAGATGT
ATTCAGGGACCGAGATCGATGAAGGAGGGGAGTGGGAAGGAGGGAGGGGA
GTCTTGGCATTTGCCGAAGGCAGGGAGTGAGGAGTGGATGTGTGTGCAGG
TACGGAGGAAGGATGGGGAGGAAGGGGTGAATGAAGAGAAGTAA
back to top
Synonyms
Publications