Properties
Property Name | Value |
TranscriptId | 585091 |
Track | FilteredModels2 |
ProteinId | 585005 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_7 | supercontig | scaffold_7:969346..972804 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3231 ID=mRNA_3231|Name=jgi.p|Nanoce1779_2|585005|organism=Nannochloropsis oceanica|type=mRNA|length=3459bp CAGTTTGCGAAGCCAAACGTCGCACGCGTCGGAAAAAGCGCTGCGTGCCT TGACACGATCCCTCCTTCTGCTCCAAATCTTCTATTTTCTGAAAGTGACG CATTATCCTTTATCTGCTCTGTGTTTGTGTGAATGCACACAGGCTTTGAT TGCCTATGTCACCCCGTAGCGCAAGGGCGTAATGTGTGCTGCGGCGTCCC GGTCTACGCCGCCTTCGTGACACCAACACATGCAGCGAGCGAGCTGCAAC GAACCCGGTAGGACTGCCCGCAAAAGCTCAGACGCGGGCGTCAAGACTCT AAGGGTCTGCTTTTGACTATACCCGCCACCTTTATCCACATGCAATATCA CTCCATGTCTTCCTTTTGTCGTGTTACCAAGCCATCTGCACAAGGCAGGC GGGCATTTTATTGAACCTAAGGAAATTCATTCGCTGCATTTTCTGTTTAT GTACCGCGGCCCTTTCTCATGCTTATCCTCTTCCTCCGAACACAAACATG CACAGTGCATATAATGACGTCGATCACAACGAGGATAAAAATTCCGCGGG CAGCGGGAAGAGAAGTGGGCATCAGGAGGCTGCTCCTTCTTTTCCATGCC AGCTTTCTCTGCCTATTCCTGAGCCTAAGCACCGTGGGAGCATTTGCCCC CTTGGGGCTTTGTTCGCATCGACGCCGCATTGCCGTAACAGTGGGCTCTA GCCCTAGCAGCACCACCCCAGAGGCCGCTGCACCTGATAGCGTCGTCCAG CCGACAATCTCTTGGGACATGAGGGTTCCGCGTCGCGCGGGCCTCGCCCC TCCTACTCATTCTTCTTCCCGTGACACAAGATTAGTCAAAGGACCACGTC GCGTGCCGCAACCCACAAATTACGGTTTGTGGGACCTATTGATCGGACCA GTGGCTGCTGACTTTAAGCTTGTAGGGATGCCTTCAGAGCTCGGGCCTTT GGCAAACGACGTGCATCGTGCCACAGAGCATCTGACCCGCCCAGAACGCC TGGCAGTACTTCAGGCATTGGTGCGTTCCTACCACGCGTACCGTCTCCGA GCGCCCTCTCCTTTTGTGTCCCAAGAGGCCACAGCAGCCCACTCGCCCAC CGAGAAAGCCAAAGCCAAGTCATTGACTGTAGGGGCATACATGGAGCAAA ACGTTGCGGTGATCCGTTTGTTGGGTGATTCGGAAGTGGATGGAGATACT ATGGTTGCTGCTCTTTTGTGCCAGGCTCCTCTGTCAGTAGAGGCCGTTGA GGCTGATTTTGGAGCGCCGGTGGCCGGGATCTTAAAAGGGTGGAAGGCCA TGTTGGCGGTGGAGAGTCAGTTGGAAATTAAGAGTTTGATTCATGAGTAT GCGCACTTTTTGTGGGGGGGTCAGGGGGATAATCTGCGTAATTTGCTGTT GGTGGTGGGTAAGGATTGGAGGGCAGTTGCCTTGAGGGTTGCATGGAAGA AAGTAGAGATGGAGACGAGGGTATTTGGGACGAAGAAGGATGAAATTGAC GCCTGTTGGGCTTGTTTGAATGTATACGCCTCTTTGGCAGAAGCGGCGGG GATGAGCATCATTAAGAATGCGTTAGAGGATCGGGCGTTTCAGTTCTTGA TGCCCCAGGAACACAGGCGGGTGGTGTCAGAGCTTGAGGCGAGACGAGGA CACTACCAGAAGGTTTTGGGGCAGGCGAGGAGGGAGGTGCTCCAAGCACT GATGGAGGATCCGATCTTTATGAGTAATGTGGAGAGGGTGGAGGTGAGGG GGAGGATCAAGAGCCCCTATAGCACTTGGAAGAAGATGAAGAGGAAGGGA CAGAGGGAGGGGGCGAGCGCTGGGGAGGGAGGTCGGGCGGTCGGATTCGA GGGATTGTATGACATGGTGGCTTTGCGCGTGGTGTGCACGCCGCTGTACA ACGAAGAGAAAAAGGACGTGTATTCTCATCCTTCTTCCTCCTCCTCGCCG TCTTCCTCGTCTCCACCTACTCCGTTGATGCTCGAAGCGCGGGCCAGCAA GGACAGGGCGACCTGTGAATATATCCTCCATGAAGTCGTTCACAAGCTAC GTCCGCATTACAAATCCCGTGTCAAGGACTATATCGGCGAGGGCAAACGC AAAGCGAATGGGTATCAATCCCTCCATACAACCCTGGCTTACCGCATTCG AGGAGAAACGACGCCGGTGGAGGTTCAGATCCGAACGAGCGAAATGCACT CTGTGGCAGAGCATGGGTTAGCCGCCCATTGCCTGTACAAGGGAGATAAG AATTTGGCGGACGTGATTGAACGAGGGCAGCAACAGATGGATGCGGAGAT GGGGGAGCAAGGGAAGGAGGAACAGCAGCCGCCGAGGGGGTTTGCTGGGC CGGGGGAATTTCTGACATGGTGTCAACGGATGCTGGATAAGAGTCATGTG ATTGTCTTTTCGCCTGATGGACGACTGTTAAAGCTAGACCGGGGGGCGAC ATTGCTTGATTTCTTGAAGGCATCTTATGTGCAGCGAAAAGTGGGGAGAG GAATGGTGACGCGGAGCAGCAGCATCAGCAGCAGTGTTGAGCACGGTGTG AGAAATGGGGAAGAAAAGCACCATCATCACAAGCTGCAGCCGCAACGGTT TCGGGAGGAACAGATGGAAGAAGCGGCAGAGGAACGAAGGAGGAAGAAGG CGTATGTACAGCTGAAAAAGACAAAGCGGAGCACGCAGGGTATGCTGTTG CTGAACGGACGCACGGCCCCGGCACTGGATCAGGTCTTGGTGACAGGGGA CGTCATCTCATACATGTAAATATATAAACGTGGGTTATTTCTTTGTATAT AGTAGAGAAGAACAGGTAGGAAAAGGGTGTTTTTGGATGTTTGATAGCAT AAGGTAGAAAAAGCATGTATGTACAGACGTCCACAGGAGACGTGGAACGA AAGGGACAGGGGGAAAGAGGAGGACACTGCTGCGCATATGCTTGTGCTTT ATATCCTCTATCAAGAGAGAATGTGTATAAGGGGAAGGAAGGGCGGGGGG GGTGCAATGTACTTGTACAAGAGGCCCGGCTGCGACCTCTTGAGGAGCTT GATTTTACCCACCAGGATGCCATGATCAACTCACAGCGCCGTCTGAGAAG ATTAAGCAAGCGACCGGTACACCACACGACGGGCACGTGTATTTAGGCAC GTGTATTTAGCTCGACGGTAGTCAGCTTATAGTAGAGAGTTGTTATAATT TAGCACTTCACCGTTGATATTGATGATATTTTTTCCCGTTTCGCCGCGAG CGTATGAAGGAGAAAGGGACGGGCATGTCCCCTCCCTTGGTTCTCCTGAC TTTTCCCATGACGCCCAAAAATCAGCAGCAGCAGTAATAGCGACGGCAGT AAAAGTAGTAAGAAAACCGAGAACACCCCTTTTGTACAGACTAATAAGAA ATCCAAAACTTGGAACGCATCAAATCTTACAAAAAGAAACAAGGACAGAT ACACATTGA back to topprotein sequence of jgi.p|Nanoce1779_2|585005 >mRNA_3231-protein ID=mRNA_3231-protein|Name=jgi.p|Nanoce1779_2|585005|organism=Nannochloropsis oceanica|type=polypeptide|length=767bp MLILFLRTQTCTVHIMTSITTRIKIPRAAGREVGIRRLLLLFHASFLCLF LSLSTVGAFAPLGLCSHRRRIAVTVGSSPSSTTPEAAAPDSVVQPTISWD MRVPRRAGLAPPTHSSSRDTRLVKGPRRVPQPTNYGLWDLLIGPVAADFK LVGMPSELGPLANDVHRATEHLTRPERLAVLQALVRSYHAYRLRAPSPFV SQEATAAHSPTEKAKAKSLTVGAYMEQNVAVIRLLGDSEVDGDTMVAALL CQAPLSVEAVEADFGAPVAGILKGWKAMLAVESQLEIKSLIHEYAHFLWG GQGDNLRNLLLVVGKDWRAVALRVAWKKVEMETRVFGTKKDEIDACWACL NVYASLAEAAGMSIIKNALEDRAFQFLMPQEHRRVVSELEARRGHYQKVL GQARREVLQALMEDPIFMSNVERVEVRGRIKSPYSTWKKMKRKGQREGAS AGEGGRAVGFEGLYDMVALRVVCTPLYNEEKKDVYSHPSSSSSPSSSSPP TPLMLEARASKDRATCEYILHEVVHKLRPHYKSRVKDYIGEGKRKANGYQ SLHTTLAYRIRGETTPVEVQIRTSEMHSVAEHGLAAHCLYKGDKNLADVI ERGQQQMDAEMGEQGKEEQQPPRGFAGPGEFLTWCQRMLDKSHVIVFSPD GRLLKLDRGATLLDFLKASYVQRKVGRGMVTRSSSISSSVEHGVRNGEEK HHHHKLQPQRFREEQMEEAAEERRRKKAYVQLKKTKRSTQGMLLLNGRTA PALDQVLVTGDVISYM* back to topmRNA from alignment at scaffold_7:969346..972804+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3231 ID=mRNA_3231|Name=jgi.p|Nanoce1779_2|585005|organism=Nannochloropsis oceanica|type=mRNA|length=3459bp|location=Sequence derived from alignment at scaffold_7:969346..972804+ (Nannochloropsis oceanica) CAGTTTGCGAAGCCAAACGTCGCACGCGTCGGAAAAAGCGCTGCGTGCCT
TGACACGATCCCTCCTTCTGCTCCAAATCTTCTATTTTCTGAAAGTGACG
CATTATCCTTTATCTGCTCTGTGTTTGTGTGAATGCACACAGGCTTTGAT
TGCCTATGTCACCCCGTAGCGCAAGGGCGTAATGTGTGCTGCGGCGTCCC
GGTCTACGCCGCCTTCGTGACACCAACACATGCAGCGAGCGAGCTGCAAC
GAACCCGGTAGGACTGCCCGCAAAAGCTCAGACGCGGGCGTCAAGACTCT
AAGGGTCTGCTTTTGACTATACCCGCCACCTTTATCCACATGCAATATCA
CTCCATGTCTTCCTTTTGTCGTGTTACCAAGCCATCTGCACAAGGCAGGC
GGGCATTTTATTGAACCTAAGGAAATTCATTCGCTGCATTTTCTGTTTAT
GTACCGCGGCCCTTTCTCATGCTTATCCTCTTCCTCCGAACACAAACATG
CACAGTGCATATAATGACGTCGATCACAACGAGGATAAAAATTCCGCGGG
CAGCGGGAAGAGAAGTGGGCATCAGGAGGCTGCTCCTTCTTTTCCATGCC
AGCTTTCTCTGCCTATTCCTGAGCCTAAGCACCGTGGGAGCATTTGCCCC
CTTGGGGCTTTGTTCGCATCGACGCCGCATTGCCGTAACAGTGGGCTCTA
GCCCTAGCAGCACCACCCCAGAGGCCGCTGCACCTGATAGCGTCGTCCAG
CCGACAATCTCTTGGGACATGAGGGTTCCGCGTCGCGCGGGCCTCGCCCC
TCCTACTCATTCTTCTTCCCGTGACACAAGATTAGTCAAAGGACCACGTC
GCGTGCCGCAACCCACAAATTACGGTTTGTGGGACCTATTGATCGGACCA
GTGGCTGCTGACTTTAAGCTTGTAGGGATGCCTTCAGAGCTCGGGCCTTT
GGCAAACGACGTGCATCGTGCCACAGAGCATCTGACCCGCCCAGAACGCC
TGGCAGTACTTCAGGCATTGGTGCGTTCCTACCACGCGTACCGTCTCCGA
GCGCCCTCTCCTTTTGTGTCCCAAGAGGCCACAGCAGCCCACTCGCCCAC
CGAGAAAGCCAAAGCCAAGTCATTGACTGTAGGGGCATACATGGAGCAAA
ACGTTGCGGTGATCCGTTTGTTGGGTGATTCGGAAGTGGATGGAGATACT
ATGGTTGCTGCTCTTTTGTGCCAGGCTCCTCTGTCAGTAGAGGCCGTTGA
GGCTGATTTTGGAGCGCCGGTGGCCGGGATCTTAAAAGGGTGGAAGGCCA
TGTTGGCGGTGGAGAGTCAGTTGGAAATTAAGAGTTTGATTCATGAGTAT
GCGCACTTTTTGTGGGGGGGTCAGGGGGATAATCTGCGTAATTTGCTGTT
GGTGGTGGGTAAGGATTGGAGGGCAGTTGCCTTGAGGGTTGCATGGAAGA
AAGTAGAGATGGAGACGAGGGTATTTGGGACGAAGAAGGATGAAATTGAC
GCCTGTTGGGCTTGTTTGAATGTATACGCCTCTTTGGCAGAAGCGGCGGG
GATGAGCATCATTAAGAATGCGTTAGAGGATCGGGCGTTTCAGTTCTTGA
TGCCCCAGGAACACAGGCGGGTGGTGTCAGAGCTTGAGGCGAGACGAGGA
CACTACCAGAAGGTTTTGGGGCAGGCGAGGAGGGAGGTGCTCCAAGCACT
GATGGAGGATCCGATCTTTATGAGTAATGTGGAGAGGGTGGAGGTGAGGG
GGAGGATCAAGAGCCCCTATAGCACTTGGAAGAAGATGAAGAGGAAGGGA
CAGAGGGAGGGGGCGAGCGCTGGGGAGGGAGGTCGGGCGGTCGGATTCGA
GGGATTGTATGACATGGTGGCTTTGCGCGTGGTGTGCACGCCGCTGTACA
ACGAAGAGAAAAAGGACGTGTATTCTCATCCTTCTTCCTCCTCCTCGCCG
TCTTCCTCGTCTCCACCTACTCCGTTGATGCTCGAAGCGCGGGCCAGCAA
GGACAGGGCGACCTGTGAATATATCCTCCATGAAGTCGTTCACAAGCTAC
GTCCGCATTACAAATCCCGTGTCAAGGACTATATCGGCGAGGGCAAACGC
AAAGCGAATGGGTATCAATCCCTCCATACAACCCTGGCTTACCGCATTCG
AGGAGAAACGACGCCGGTGGAGGTTCAGATCCGAACGAGCGAAATGCACT
CTGTGGCAGAGCATGGGTTAGCCGCCCATTGCCTGTACAAGGGAGATAAG
AATTTGGCGGACGTGATTGAACGAGGGCAGCAACAGATGGATGCGGAGAT
GGGGGAGCAAGGGAAGGAGGAACAGCAGCCGCCGAGGGGGTTTGCTGGGC
CGGGGGAATTTCTGACATGGTGTCAACGGATGCTGGATAAGAGTCATGTG
ATTGTCTTTTCGCCTGATGGACGACTGTTAAAGCTAGACCGGGGGGCGAC
ATTGCTTGATTTCTTGAAGGCATCTTATGTGCAGCGAAAAGTGGGGAGAG
GAATGGTGACGCGGAGCAGCAGCATCAGCAGCAGTGTTGAGCACGGTGTG
AGAAATGGGGAAGAAAAGCACCATCATCACAAGCTGCAGCCGCAACGGTT
TCGGGAGGAACAGATGGAAGAAGCGGCAGAGGAACGAAGGAGGAAGAAGG
CGTATGTACAGCTGAAAAAGACAAAGCGGAGCACGCAGGGTATGCTGTTG
CTGAACGGACGCACGGCCCCGGCACTGGATCAGGTCTTGGTGACAGGGGA
CGTCATCTCATACATGTAAATATATAAACGTGGGTTATTTCTTTGTATAT
AGTAGAGAAGAACAGGTAGGAAAAGGGTGTTTTTGGATGTTTGATAGCAT
AAGGTAGAAAAAGCATGTATGTACAGACGTCCACAGGAGACGTGGAACGA
AAGGGACAGGGGGAAAGAGGAGGACACTGCTGCGCATATGCTTGTGCTTT
ATATCCTCTATCAAGAGAGAATGTGTATAAGGGGAAGGAAGGGCGGGGGG
GGTGCAATGTACTTGTACAAGAGGCCCGGCTGCGACCTCTTGAGGAGCTT
GATTTTACCCACCAGGATGCCATGATCAACTCACAGCGCCGTCTGAGAAG
ATTAAGCAAGCGACCGGTACACCACACGACGGGCACGTGTATTTAGGCAC
GTGTATTTAGCTCGACGGTAGTCAGCTTATAGTAGAGAGTTGTTATAATT
TAGCACTTCACCGTTGATATTGATGATATTTTTTCCCGTTTCGCCGCGAG
CGTATGAAGGAGAAAGGGACGGGCATGTCCCCTCCCTTGGTTCTCCTGAC
TTTTCCCATGACGCCCAAAAATCAGCAGCAGCAGTAATAGCGACGGCAGT
AAAAGTAGTAAGAAAACCGAGAACACCCCTTTTGTACAGACTAATAAGAA
ATCCAAAACTTGGAACGCATCAAATCTTACAAAAAGAAACAAGGACAGAT
ACACATTGA back to topCoding sequence (CDS) from alignment at scaffold_7:969346..972804+ >mRNA_3231 ID=mRNA_3231|Name=jgi.p|Nanoce1779_2|585005|organism=Nannochloropsis oceanica|type=CDS|length=2301bp|location=Sequence derived from alignment at scaffold_7:969346..972804+ (Nannochloropsis oceanica) ATGCTTATCCTCTTCCTCCGAACACAAACATGCACAGTGCATATAATGAC GTCGATCACAACGAGGATAAAAATTCCGCGGGCAGCGGGAAGAGAAGTGG GCATCAGGAGGCTGCTCCTTCTTTTCCATGCCAGCTTTCTCTGCCTATTC CTGAGCCTAAGCACCGTGGGAGCATTTGCCCCCTTGGGGCTTTGTTCGCA TCGACGCCGCATTGCCGTAACAGTGGGCTCTAGCCCTAGCAGCACCACCC CAGAGGCCGCTGCACCTGATAGCGTCGTCCAGCCGACAATCTCTTGGGAC ATGAGGGTTCCGCGTCGCGCGGGCCTCGCCCCTCCTACTCATTCTTCTTC CCGTGACACAAGATTAGTCAAAGGACCACGTCGCGTGCCGCAACCCACAA ATTACGGTTTGTGGGACCTATTGATCGGACCAGTGGCTGCTGACTTTAAG CTTGTAGGGATGCCTTCAGAGCTCGGGCCTTTGGCAAACGACGTGCATCG TGCCACAGAGCATCTGACCCGCCCAGAACGCCTGGCAGTACTTCAGGCAT TGGTGCGTTCCTACCACGCGTACCGTCTCCGAGCGCCCTCTCCTTTTGTG TCCCAAGAGGCCACAGCAGCCCACTCGCCCACCGAGAAAGCCAAAGCCAA GTCATTGACTGTAGGGGCATACATGGAGCAAAACGTTGCGGTGATCCGTT TGTTGGGTGATTCGGAAGTGGATGGAGATACTATGGTTGCTGCTCTTTTG TGCCAGGCTCCTCTGTCAGTAGAGGCCGTTGAGGCTGATTTTGGAGCGCC GGTGGCCGGGATCTTAAAAGGGTGGAAGGCCATGTTGGCGGTGGAGAGTC AGTTGGAAATTAAGAGTTTGATTCATGAGTATGCGCACTTTTTGTGGGGG GGTCAGGGGGATAATCTGCGTAATTTGCTGTTGGTGGTGGGTAAGGATTG GAGGGCAGTTGCCTTGAGGGTTGCATGGAAGAAAGTAGAGATGGAGACGA GGGTATTTGGGACGAAGAAGGATGAAATTGACGCCTGTTGGGCTTGTTTG AATGTATACGCCTCTTTGGCAGAAGCGGCGGGGATGAGCATCATTAAGAA TGCGTTAGAGGATCGGGCGTTTCAGTTCTTGATGCCCCAGGAACACAGGC GGGTGGTGTCAGAGCTTGAGGCGAGACGAGGACACTACCAGAAGGTTTTG GGGCAGGCGAGGAGGGAGGTGCTCCAAGCACTGATGGAGGATCCGATCTT TATGAGTAATGTGGAGAGGGTGGAGGTGAGGGGGAGGATCAAGAGCCCCT ATAGCACTTGGAAGAAGATGAAGAGGAAGGGACAGAGGGAGGGGGCGAGC GCTGGGGAGGGAGGTCGGGCGGTCGGATTCGAGGGATTGTATGACATGGT GGCTTTGCGCGTGGTGTGCACGCCGCTGTACAACGAAGAGAAAAAGGACG TGTATTCTCATCCTTCTTCCTCCTCCTCGCCGTCTTCCTCGTCTCCACCT ACTCCGTTGATGCTCGAAGCGCGGGCCAGCAAGGACAGGGCGACCTGTGA ATATATCCTCCATGAAGTCGTTCACAAGCTACGTCCGCATTACAAATCCC GTGTCAAGGACTATATCGGCGAGGGCAAACGCAAAGCGAATGGGTATCAA TCCCTCCATACAACCCTGGCTTACCGCATTCGAGGAGAAACGACGCCGGT GGAGGTTCAGATCCGAACGAGCGAAATGCACTCTGTGGCAGAGCATGGGT TAGCCGCCCATTGCCTGTACAAGGGAGATAAGAATTTGGCGGACGTGATT GAACGAGGGCAGCAACAGATGGATGCGGAGATGGGGGAGCAAGGGAAGGA GGAACAGCAGCCGCCGAGGGGGTTTGCTGGGCCGGGGGAATTTCTGACAT GGTGTCAACGGATGCTGGATAAGAGTCATGTGATTGTCTTTTCGCCTGAT GGACGACTGTTAAAGCTAGACCGGGGGGCGACATTGCTTGATTTCTTGAA GGCATCTTATGTGCAGCGAAAAGTGGGGAGAGGAATGGTGACGCGGAGCA GCAGCATCAGCAGCAGTGTTGAGCACGGTGTGAGAAATGGGGAAGAAAAG CACCATCATCACAAGCTGCAGCCGCAACGGTTTCGGGAGGAACAGATGGA AGAAGCGGCAGAGGAACGAAGGAGGAAGAAGGCGTATGTACAGCTGAAAA AGACAAAGCGGAGCACGCAGGGTATGCTGTTGCTGAACGGACGCACGGCC CCGGCACTGGATCAGGTCTTGGTGACAGGGGACGTCATCTCATACATGTA A back to top
|