jgi.p|Nanoce1779_2|585000, mRNA_3230 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585000
Unique NamemRNA_3230
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_7:967344..968582 -

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Properties
Property NameValue
TranscriptId585086
TrackFilteredModels2
ProteinId585000
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:967344..968582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585000gene_3230Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585000mRNA_3230-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3230CDS_3230Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3230 ID=mRNA_3230|Name=jgi.p|Nanoce1779_2|585000|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
CCTCCTCTGCCGCCTCCACGTCGTTTTTGGTTGTGGACAGAGAGCGTGCT
CCAAGCAAGAGACAGCGGGCCGAAATGTGGGAACGGTTGTCTATGAAGCT
GCAAGCGGGAGTGTGGGTGGTGGGATCGATGGCAATACTTCACTACACGG
ACTTTGTTCATGCATTGTTGAACGACGAGAGAATATACCGAGGCTACTTT
CACATAGCCATGATATGCGTCGGCATTAACCTCTGTATTGGTGCCTATCT
TGTAGTGTATCTCCCCTTCATCAAAGGCGTGGACTTGGAATGGGCCATCT
ACTGCCCACGCATGATCCCGGCTGCGACGGCTACGGCTGTTGTATGCGCG
TTTACGTTGGTGAGCAGCCTCTGGCCCGTCTACGGTTTTTTTGCCCCTTT
GATCCTTCTTGTCCTCTTCATGGGGGCCCTGTTTGCCTCGCACTTTATCC
CGTGGCCTTTGTGAAGGGGGAGCAGAGCTGGACAAGGGTGATCTAAAAGG
CAGAGGGAATCCAAAACCAGGAATACATAGCAAAGTAACTCCCAAAAGAA
TCACACCAAAGCACTTTGTAAAGCGCTTAGAGAGTGACATAAATGTTCTT
ACACTCCATGCTGCCTTGTCTTGTTCGAATGCGTTCAGGGGGGAGGAGGT
GCGGCTGCCCTGCCAGGGAGAGGCCGGCGGCGGCACGTCATCGCAATCGC
CAATTCAATTCGAATGCCTACTTCTTTCCCCTCCCTCCTTGACCTCACCA
TAAATTCAACACACGAGCCAAATGCCCCCCATTCACCTCGTTCGATAGCA
TCACAAGTCTTATTTTCTCCCCTTCCTTAATTTCCCAGGGCCTAAAGGGA
AATCCAACCTTTACTTCCTCTCCTGCCAAGCC
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protein sequence of jgi.p|Nanoce1779_2|585000

>mRNA_3230-protein ID=mRNA_3230-protein|Name=jgi.p|Nanoce1779_2|585000|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVG
INLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAFTLVSSLW
PVYGFFAPLILLVLFMGALFASHFIPWPL*
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mRNA from alignment at scaffold_7:967344..968582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3230 ID=mRNA_3230|Name=jgi.p|Nanoce1779_2|585000|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at scaffold_7:967344..968582- (Nannochloropsis oceanica)
CCTCCTCTGCCGCCTCCACGTCGTTTTTGGTTGTGGACAGAGAGCGTGCT
CCAAGCAAGAGACAGCGGGCCGAAATGTGGGAACGGTTGTCTATGAAGCT
GCAAGCGGGAGTGTGGGTGGTGGGATCGATGGCAATACTTCACTACACGG
ACTTTGTTCATGCATTGTTGAACGACGAGAGAATATACCGGTACGAACTC
CCGCATGTGTGTTCTGATCTACTGAATGTCTGGACCTGACCACGAATGAG
GACACCCACCTCACTTTTTCTTTCTTTTCGTCATCTTCTCATCGCAACTG
TAGCACCGCCGCATTTATGTTGATTGTCCTATACGTGCCTCAACTTCCAA
TCTTACTCAATCACATCCTTTCCGATTCCAACGCCCTCCCCAATCACACG
AAAAAAGCAGAGGCTACTTTCACATAGCCATGATATGCGTCGGCATTAAC
CTCTGTATTGGTGCCTATCTTGTAGTGTATCTCCCCTTCATCAAAGGCGT
GGACTTGGAATGGGCCATCTACTGCCCACGCATGATCCCGGCTGCGACGG
CTACGGCTGTTGTATGCGCGTTTACGTAAGCATCTAGTGGAGGGATGAAG
GCCAAGGAAACACACAGGTTGATGAACAAAGGGCTCGCCGCTCTCGGTCT
CAGACTCAGGGCATGCCTGTTTTCATCAACTCACTCTCACGTATTTCACA
ATAAAAACATAGGTTGGTGAGCAGCCTCTGGCCCGTCTACGGTTTTTTTG
CCCCTTTGATCCTTCTTGTCCTCTTCATGGGGGCCCTGTTTGCCTCGCAC
TTTATCCCGTGGCCTTTGTGAAGGGGGAGCAGAGCTGGACAAGGGTGATC
TAAAAGGCAGAGGGAATCCAAAACCAGGAATACATAGCAAAGTAACTCCC
AAAAGAATCACACCAAAGCACTTTGTAAAGCGCTTAGAGAGTGACATAAA
TGTTCTTACACTCCATGCTGCCTTGTCTTGTTCGAATGCGTTCAGGGGGG
AGGAGGTGCGGCTGCCCTGCCAGGGAGAGGCCGGCGGCGGCACGTCATCG
CAATCGCCAATTCAATTCGAATGCCTACTTCTTTCCCCTCCCTCCTTGAC
CTCACCATAAATTCAACACACGAGCCAAATGCCCCCCATTCACCTCGTTC
GATAGCATCACAAGTCTTATTTTCTCCCCTTCCTTAATTTCCCAGGGCCT
AAAGGGAAATCCAACCTTTACTTCCTCTCCTGCCAAGCC
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Coding sequence (CDS) from alignment at scaffold_7:967344..968582-

>mRNA_3230 ID=mRNA_3230|Name=jgi.p|Nanoce1779_2|585000|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_7:967344..968582- (Nannochloropsis oceanica)
GTTGGTGAGCAGCCTCTGGCCCGTCTACGGTTTTTTTGCCCCTTTGATCC
TTCTTGTCCTCTTCATGGGGGCCCTGTTTGCCTCGCACTTTATCCCGTGG
CCTTTGTGAAGGCTACTTTCACATAGCCATGATATGCGTCGGCATTAACC
TCTGTATTGGTGCCTATCTTGTAGTGTATCTCCCCTTCATCAAAGGCGTG
GACTTGGAATGGGCCATCTACTGCCCACGCATGATCCCGGCTGCGACGGC
TACGGCTGTTGTATGCGCGTTTACATGTGGGAACGGTTGTCTATGAAGCT
GCAAGCGGGAGTGTGGGTGGTGGGATCGATGGCAATACTTCACTACACGG
ACTTTGTTCATGCATTGTTGAACGACGAGAGAATATACCGGTTGGTGAGC
AGCCTCTGGCCCGTCTACGGTTTTTTTGCCCCTTTGATCCTTCTTGTCCT
CTTCATGGGGGCCCTGTTTGCCTCGCACTTTATCCCGTGGCCTTTGTGAA
GGCTACTTTCACATAGCCATGATATGCGTCGGCATTAACCTCTGTATTGG
TGCCTATCTTGTAGTGTATCTCCCCTTCATCAAAGGCGTGGACTTGGAAT
GGGCCATCTACTGCCCACGCATGATCCCGGCTGCGACGGCTACGGCTGTT
GTATGCGCGTTTACATGTGGGAACGGTTGTCTATGAAGCTGCAAGCGGGA
GTGTGGGTGGTGGGATCGATGGCAATACTTCACTACACGGACTTTGTTCA
TGCATTGTTGAACGACGAGAGAATATACCGGTTGGTGAGCAGCCTCTGGC
CCGTCTACGGTTTTTTTGCCCCTTTGATCCTTCTTGTCCTCTTCATGGGG
GCCCTGTTTGCCTCGCACTTTATCCCGTGGCCTTTGTGAAGGCTACTTTC
ACATAGCCATGATATGCGTCGGCATTAACCTCTGTATTGGTGCCTATCTT
GTAGTGTATCTCCCCTTCATCAAAGGCGTGGACTTGGAATGGGCCATCTA
CTGCCCACGCATGATCCCGGCTGCGACGGCTACGGCTGTTGTATGCGCGT
TTACATGTGGGAACGGTTGTCTATGAAGCTGCAAGCGGGAGTGTGGGTGG
TGGGATCGATGGCAATACTTCACTACACGGACTTTGTTCATGCATTGTTG
AACGACGAGAGAATATACCG
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Synonyms
Publications