jgi.p|Nanoce1779_2|629467, mRNA_3226 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629467
Unique Name	mRNA_3226
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1907
Alignment location	scaffold_7:955399..957938 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629553
Track	FilteredModels2
ProteinId	629467

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:955399..957938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629467	gene_3226	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629467	mRNA_3226-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3226	CDS_3226	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:955399..957938+
coding sequence from alignment at scaffold_7:955399..957938+

mRNA sequence

>mRNA_3226 ID=mRNA_3226|Name=jgi.p|Nanoce1779_2|629467|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp
ATGAACCCACGCTCGGTTACTCGGACCTTTTCCCGGCAGTTTTCCAAGCG
GTATTTGAGTAAATGGAACGACAAAACGGGCTTGAAAGAAATGGTGGAGC
AGACACTCGCAGATCTGGTGCGGGTGGCTGATACAATCGACGTGCATTCC
AATCCCAAAGTTGCGGCATTTGCCGCTCGCGTACGGACGCAAATTGAGAC
ACTGCGGAGGGACCATGATGCCAAGGTGATTTACTTTTTCAATGAGGCCC
CGGAGACGATAAAAGACATACCAATTTTGCCCGCTTTCCCCTTCAAGATC
CCCTTGGTCGATGAGGAGTCCGACGACAAGGGGGAAGAAAATAACGATGA
ACCCACACCTTTGTTTAGCTCCCGGCGGGTCCAACCCGGAGAAGGTGTGG
TGAAGAAGAAGCAGGAGTTCGTGCGCTTGTTCAAAAATTTGCTGACGCTC
GCCAAGCAGACAGAGCCTTCGCCGGAAGAGGAGGACATGAGCTGGTTTGA
GGCTCCGTCTTCCACCTTGGAACGTTCTGTCCCTTCTCCTCCCTCCGCCT
CATCGTCGTCTGTCGTTCCTGGTGCTGCTGCATCCTCATCGCCGGTCAGG
TCGGTTCCTGTGTCTGGAGCGGGGCAAAGTGGCGTCGACCGTCTCTTGAT
GCAAGTCCGACAAAGGATGGAAAATAAGGCCGCCGAGGTCCATCACGTTG
TATCCGATAAGGCATGCGCGGTGGTGGTGGTTGTGCCGGACAGAAGGACC
ACCTACGTGACCTTTCGTGGAACCAAAGACCCTGTGGATGTCTTGACGGA
TATAAATTTCTTGTCTGCAACATTTACGCCGCTGGGATGGGAGGAGGAGG
AAGAGGAGGAAGGGGAGGAGGGAGGGAAGGAGGGAGGATCGGCTGCAGGG
TTTTTGCCGTTCATTGATCCGAATAATGTGGCTCAGGGGCAGCTGCAAAT
GATGTCAGAGACGGAGGAAACGACGGGGACATTGAAAGTTCATGGTGGGT
TCAAATTGGCGTTTGATTCGATCAAGGATCGAGTGACTGAATTGTTGTTG
GATGAGGCAGGGGCGGGAGGGGCAACTGATCATGTTGTGTTTGTCGGACA
TAGTATGGGGGGGGCTCTTGCTCAGCTGGCGACTGTGTATTATTGTGAGT
TGAAGGCGAGATTGGTGACATTTGCGTCGCCGGCCATTGGGAATGGGGCA
TTTTGCAGGCTGCTTGATTGTTGTGGGCAGCCATATGGGGGGTTGAGGGT
GTGGAATGATTTTGATGTGGTCCCGTCGATCGCGCAATTGGTTGGGTATA
AACACGCTGGGGTTCCGATTAAGTTGGACGTGAGCAAGAGTGCCAAGGAG
CTGTTTGAGATGGAGAATGTAAACTCATTGAGGGGCTTGATCGATTTCTT
GGCGCCGCATGTGATGTTTCAGTTGGGGAGTGTCTGTTTTGTCTTTCCGG
TAATTGGGTGGGAACTGCAAAGTGGGGGGACAGCTTTGAAGCAGAAGCAG
CTGCTGGAGGAACAGCAACAGCAACAGCAGCAGGCAGAGGGGGGAGTGGG
GGTACAAGATGAGGAGATCGCGACGGCGATGGCAGCAACGGCAGCGGCTG
CGGCTGCGGAGGGAGCGGGTTGAGAGAAGGGAAATGAACAAGATTTTTTG
TGTGCCCGTGAATACGATAACATTTAATTGTATGTCCGGGTCGACTATCG
ATTGTTCCTGTGCGAGCACTACGTGTGCATGCGTGGTGAAACGGGTTTTC
GCGGGCGTGGATAGGGGGAGGGAATGAAAGTGATTCGCCAAAACGAAGGA
AACGATTACCTGTGTACATTGCTCTGATGAGCTTCCCAATGGAGGATACC
AAATGATAACTAGGAAGTGGAGAGAAGGTGCGAAAGAAAGAGAAAATGAC
CACACTT

protein sequence of jgi.p|Nanoce1779_2|629467

>mRNA_3226-protein ID=mRNA_3226-protein|Name=jgi.p|Nanoce1779_2|629467|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MNPRSVTRTFSRQFSKRYLSKWNDKTGLKEMVEQTLADLVRVADTIDVHS
NPKVAAFAARVRTQIETLRRDHDAKVIYFFNEAPETIKDIPILPAFPFKI
PLVDEESDDKGEENNDEPTPLFSSRRVQPGEGVVKKKQEFVRLFKNLLTL
AKQTEPSPEEEDMSWFEAPSSTLERSVPSPPSASSSSVVPGAAASSSPVR
SVPVSGAGQSGVDRLLMQVRQRMENKAAEVHHVVSDKACAVVVVVPDRRT
TYVTFRGTKDPVDVLTDINFLSATFTPLGWEEEEEEEGEEGGKEGGSAAG
FLPFIDPNNVAQGQLQMMSETEETTGTLKVHGGFKLAFDSIKDRVTELLL
DEAGAGGATDHVVFVGHSMGGALAQLATVYYCELKARLVTFASPAIGNGA
FCRLLDCCGQPYGGLRVWNDFDVVPSIAQLVGYKHAGVPIKLDVSKSAKE
LFEMENVNSLRGLIDFLAPHVMFQLGSVCFVFPVIGWELQSGGTALKQKQ
LLEEQQQQQQQAEGGVGVQDEEIATAMAATAAAAAAEGAG*

mRNA from alignment at scaffold_7:955399..957938+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3226 ID=mRNA_3226|Name=jgi.p|Nanoce1779_2|629467|organism=Nannochloropsis oceanica|type=mRNA|length=2540bp|location=Sequence derived from alignment at scaffold_7:955399..957938+ (Nannochloropsis oceanica)
ATGAACCCACGCTCGGTTACTCGGACCTTTTCCCGGCAGTTTTCCAAGCG
GTATTTGAGTAAATGGAACGACAAAACGGGCTTGAAAGAAATGGTGGAGC
AGACACTCGCAGATCTGGTGCGGGTGGCTGATACAATCGACGTGCATTCC
AATCCCAAAGTTGCGGCATTTGCCGCTCGCGTACGGACGCAAATTGAGAC
ACTGCGGAGGGACCATGATGCCAAGGTGATTTACTTTTTCAATGAGGCCC
CGGAGACGATAAAAGACATACCAATTTTGCCCGCTTTCCCCTTCAAGATC
CCCTTGGTCGATGAGGAGTCCGACGACAAGGGGGAAGAAAATAACGATGA
ACCCACACCTTTGTTTAGCTCCCGGCGGGTCCAACCCGGAGAAGGTGTGG
TGAAGAAGAAGCAGGAGTTCGTGCGCTTGTTCAAAAATTTGCTGACGCTC
GCCAAGCAGACAGAGCCTTCGCCGGAAGAGGAGGACATGAGCTGGTTTGA
GGCTCCGTCTTCCACCTTGGAACGTTCTGTCCCTTCTCCTCCCTCCGCCT
CATCGTCGTCTGTCGTTCCTGGTGCTGCTGCATCCTCATCGCCGGTCAGG
TCGGTTCCTGTGTCTGGAGCGGGGCAAAGTGGCGTCGACCGTCTCTTGAT
GCAAGTCCGACAAAGGATGGAAAATAAGGCCGCCGAGGTAAGGAAAAGCG
AGGAAGCCGTTGTAAAGGCAGGGTTGCGATTAGAATTTGAGCGTTGGCAG
CTTTTGGAGGCCAGTCGTTACTTCAGTGAGACTTGGGCGAAGACTCGCGA
ACTTTTATTGCGCGGGACTAGCAGCAGCAGCGGCAGTGCCAAGAACATCA
GCAGTAGTAGTAGCAGCATCAGCAGTAGCAGTTATGATATAAGCAGCAGT
AGCAGCAGTAGCAGCAGCACTGCAGGCACTGCTGCGTCTATGGCCTTGGA
AATGGTGCCTCCACAACTTCGTGCGATTTTTCAAGAGGTGGAGGGGGCGC
TTGCTAGAGGCCTGCCCGTCAAGCTGGACTTCACCGCATTGTCCTCCGTA
TTAAATACTGTCAAAATCGGTCATCGTGCCGAAGCCTTTCCCCAACGAGA
CTGGAGAAGCAGCCTAGACATACTGGCTTCTCAAGTCCCTCTCCCCGACC
CTCTGCTGCACGAACTCAATCACCCGCTGTACCTTCATTCCTCCCTCCTG
CTCGCCACCACCCCCTACAATGTCGCTCTCACCAAGGAAGCCGAGACCGA
TCCCGTCCTCCTCGCTCGTACGGCGCTAGCTGCATCGAAGGCACTTGGTG
TGGCTCCTTCTCGATTACAGGTCCATCACGTTGTATCCGATAAGGCATGC
GCGGTGGTGGTGGTTGTGCCGGACAGAAGGACCACCTACGTGACCTTTCG
TGGAACCAAAGACCCTGTGGATGTCTTGACGGATATAAATTTCTTGTCTG
CAACATTTACGCCGCTGGGATGGGAGGAGGAGGAAGAGGAGGAAGGGGAG
GAGGGAGGGAAGGAGGGAGGATCGGCTGCAGGGTTTTTGCCGTTCATTGA
TCCGAATAATGTGGCTCAGGGGCAGCTGCAAATGATGTCAGAGACGGAGG
AAACGACGGGGACATTGAAAGTTCATGGTGGGTTCAAATTGGCGTTTGAT
TCGATCAAGGATCGAGTGACTGAATTGTTGTTGGATGAGGCAGGGGCGGG
AGGGGCAACTGATCATGTTGTGTTTGTCGGACATAGTATGGGGGGGGCTC
TTGCTCAGCTGGCGACTGTGTATTATTGTGAGTTGAAGGCGAGATTGGTG
ACATTTGCGTCGCCGGCCATTGGGAATGGGGCATTTTGCAGGCTGCTTGA
TTGTTGTGGGCAGCCATATGGGGGGTTGAGGGTGTGGAATGATTTTGATG
TGGTCCCGTCGATCGCGCAATTGGTTGGGTATAAACACGCTGGGGTTCCG
ATTAAGTTGGACGTGAGCAAGAGTGCCAAGGAGCTGTTTGAGATGGAGAA
TGTAAACTCATTGAGGGGCTTGATCGATTTCTTGGCGCCGCATGTGATGT
TTCAGTTGGGGAGTGTCTGTTTTGTCTTTCCGGTAATTGGGTGGGAACTG
CAAAGTGGGGGGACAGCTTTGAAGCAGAAGCAGCTGCTGGAGGAACAGCA
ACAGCAACAGCAGCAGGCAGAGGGGGGAGTGGGGGTACAAGATGAGGAGA
TCGCGACGGCGATGGCAGCAACGGCAGCGGCTGCGGCTGCGGAGGGAGCG
GGTTGAGAGAAGGGAAATGAACAAGATTTTTTGTGTGCCCGTGAATACGA
TAACATTTAATTGTATGTCCGGGTCGACTATCGATTGTTCCTGTGCGAGC
ACTACGTGTGCATGCGTGGTGAAACGGGTTTTCGCGGGCGTGGATAGGGG
GAGGGAATGAAAGTGATTCGCCAAAACGAAGGAAACGATTACCTGTGTAC
ATTGCTCTGATGAGCTTCCCAATGGAGGATACCAAATGATAACTAGGAAG
TGGAGAGAAGGTGCGAAAGAAAGAGAAAATGACCACACTT

Coding sequence (CDS) from alignment at scaffold_7:955399..957938+

>mRNA_3226 ID=mRNA_3226|Name=jgi.p|Nanoce1779_2|629467|organism=Nannochloropsis oceanica|type=CDS|length=3246bp|location=Sequence derived from alignment at scaffold_7:955399..957938+ (Nannochloropsis oceanica)
ATGAACCCACGCTCGGTTACTCGGACCTTTTCCCGGCAGTTTTCCAAGCG
GTATTTGAGTAAATGGAACGACAAAACGGGCTTGAAAGAAATGGTGGAGC
AGACACTCGCAGATCTGGTGCGGGTGGCTGATACAATCGACGTGCATTCC
AATCCCAAAGTTGCGGCATTTGCCGCTCGCGTACGGACGCAAATTGAGAC
ACTGCGGAGGGACCATGATGCCAAGGTGATTTACTTTTTCAATGAGGCCC
CGGAGACGATAAAAGACATACCAATTTTGCCCGCTTTCCCCTTCAAGATC
CCCTTGGTCGATGAGGAGTCCGACGACAAGGGGGAAGAAAATAACGATGA
ACCCACACCTTTGTTTAGCTCCCGGCGGGTCCAACCCGGAGAAGGTGTGG
TGAAGAAGAAGCAGGAGTTCGTGCGCTTGTTCAAAAATTTGCTGACGCTC
GCCAAGCAGACAGAGCCTTCGCCGGAAGAGGAGGACATGAGCTGGTTTGA
GGCTCCGTCTTCCACCTTGGAACGTTCTGTCCCTTCTCCTCCCTCCGCCT
CATCGTCGTCTGTCGTTCCTGGTGCTGCTGCATCCTCATCGCCGGTCAGG
TCGGTTCCTGTGTCTGGAGCGGGGCAAAGTGGCGTCGACCGTCTCTTGAT
GCAAGTCCGACAAAGGATGGAAAATAAGGCCGCCGAGGTCCATCACGTTG
TATCCGATAAGGCATGCGCGGTGGTGGTGGTTGTGCCGGACAGAAGGACC
ACCTACGTGACCTTTCGTGGAACCAAAGACCCTGTGGATGTCTTGACGGA
TATAAATTTCTTGTCTGCAACATTTACGCCGCTGGGATGGGAGGAGGAGG
AAGAGGAGGAAGGGGAGGAGGGAGGGAAGGAGGGAGGATCGGCTGCAGGG
TTTTTGCCGTTCATTGATCCGAATAATGTGGCTCAGGGGCAGCTGCAAAT
GATGTCAGAGACGGAGGAAACGACGGGGACATTGAAAGTTCATGGTGGGT
TCAAATTGGCGTTTGATTCGATCAAGGATCGAGTGACTGAATTGTTGTTG
GATGAGGCAGGGGCGGGAGGGGCAACTGATCATGTTGTGTTTGTCGGACA
TAGTATGGGGGGGGCTCTTGCTCAGCTGGCGACTGTGTATTATTGTGAGT
TGAAGGCGAGATTGGTGACATTTGCGTCGCCGGCCATTGGGAATGGGGCA
TTTTGCAGGCTGCTTGATTGTTGTGGGCAGCCATATGGGGGGTTGAGGGT
GTGGAATGATTTTGATGTGGTCCCGTCGATCGCGCAATTGGTTGGGTATA
AACACGCTGGGGTTCCGATTAAGTTGGACGTGAGCAAGAGTGCCAAGGAG
CTGTTTGAGATGGAGAATGTAAACTCATTGAGGGGCTTGATCGATTTCTT
GGCGCCGCATGTGATGTTTCAGTTGGGGAGTGTCTGTTTTGTCTTTCCGG
TAATTGGGTGGGAACTGCAAAGTGGGGGGACAGCTTTGAAGCAGAAGCAG
CTGCTGGAGGAACAGCAACAGCAACAGCAGCAGGCAGAGGGGGGAGTGGG
GGTACAAGATGAGGAGATCGCGACGGCGATGGCAGCAACGGCAGCGGCTG
CGGCTGCGGAGGGAGCGGGTTGAATGAACCCACGCTCGGTTACTCGGACC
TTTTCCCGGCAGTTTTCCAAGCGGTATTTGAGTAAATGGAACGACAAAAC
GGGCTTGAAAGAAATGGTGGAGCAGACACTCGCAGATCTGGTGCGGGTGG
CTGATACAATCGACGTGCATTCCAATCCCAAAGTTGCGGCATTTGCCGCT
CGCGTACGGACGCAAATTGAGACACTGCGGAGGGACCATGATGCCAAGGT
GATTTACTTTTTCAATGAGGCCCCGGAGACGATAAAAGACATACCAATTT
TGCCCGCTTTCCCCTTCAAGATCCCCTTGGTCGATGAGGAGTCCGACGAC
AAGGGGGAAGAAAATAACGATGAACCCACACCTTTGTTTAGCTCCCGGCG
GGTCCAACCCGGAGAAGGTGTGGTGAAGAAGAAGCAGGAGTTCGTGCGCT
TGTTCAAAAATTTGCTGACGCTCGCCAAGCAGACAGAGCCTTCGCCGGAA
GAGGAGGACATGAGCTGGTTTGAGGCTCCGTCTTCCACCTTGGAACGTTC
TGTCCCTTCTCCTCCCTCCGCCTCATCGTCGTCTGTCGTTCCTGGTGCTG
CTGCATCCTCATCGCCGGTCAGGTCGGTTCCTGTGTCTGGAGCGGGGCAA
AGTGGCGTCGACCGTCTCTTGATGCAAGTCCGACAAAGGATGGAAAATAA
GGCCGCCGAGGTCCATCACGTTGTATCCGATAAGGCATGCGCGGTGGTGG
TGGTTGTGCCGGACAGAAGGACCACCTACGTGACCTTTCGTGGAACCAAA
GACCCTGTGGATGTCTTGACGGATATAAATTTCTTGTCTGCAACATTTAC
GCCGCTGGGATGGGAGGAGGAGGAAGAGGAGGAAGGGGAGGAGGGAGGGA
AGGAGGGAGGATCGGCTGCAGGGTTTTTGCCGTTCATTGATCCGAATAAT
GTGGCTCAGGGGCAGCTGCAAATGATGTCAGAGACGGAGGAAACGACGGG
GACATTGAAAGTTCATGGTGGGTTCAAATTGGCGTTTGATTCGATCAAGG
ATCGAGTGACTGAATTGTTGTTGGATGAGGCAGGGGCGGGAGGGGCAACT
GATCATGTTGTGTTTGTCGGACATAGTATGGGGGGGGCTCTTGCTCAGCT
GGCGACTGTGTATTATTGTGAGTTGAAGGCGAGATTGGTGACATTTGCGT
CGCCGGCCATTGGGAATGGGGCATTTTGCAGGCTGCTTGATTGTTGTGGG
CAGCCATATGGGGGGTTGAGGGTGTGGAATGATTTTGATGTGGTCCCGTC
GATCGCGCAATTGGTTGGGTATAAACACGCTGGGGTTCCGATTAAGTTGG
ACGTGAGCAAGAGTGCCAAGGAGCTGTTTGAGATGGAGAATGTAAACTCA
TTGAGGGGCTTGATCGATTTCTTGGCGCCGCATGTGATGTTTCAGTTGGG
GAGTGTCTGTTTTGTCTTTCCGGTAATTGGGTGGGAACTGCAAAGTGGGG
GGACAGCTTTGAAGCAGAAGCAGCTGCTGGAGGAACAGCAACAGCAACAG
CAGCAGGCAGAGGGGGGAGTGGGGGTACAAGATGAGGAGATCGCGACGGC
GATGGCAGCAACGGCAGCGGCTGCGGCTGCGGAGGGAGCGGGTTGA

Synonyms

Publications