jgi.p|Nanoce1779_2|584984, mRNA_3224 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584984
Unique NamemRNA_3224
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length379
Alignment locationscaffold_7:949763..950141 +

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Properties
Property NameValue
TranscriptId585070
TrackFilteredModels2
ProteinId584984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:949763..950141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584984gene_3224Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584984mRNA_3224-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3224CDS_3224Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3224 ID=mRNA_3224|Name=jgi.p|Nanoce1779_2|584984|organism=Nannochloropsis oceanica|type=mRNA|length=379bp
GTGATGTGTGTGATGTATGTGCATGAGTATTGAGAGCGTGATGTCTACAT
GGAATGAGGCTCTCAACGTTCATAACGGCCCCGCCGGCGCCCACCTGCAC
CCATGGGCATGTCCTATTCTCTTTTTTATCCTTTGTTTTTCCTGTCTTAC
TCAATCCGATGCATCACACACTTGTCCACACAGCGAAGCCAAGGATTTTG
TGATGCTTCGAGTTGAGGGGGATTTCCAGTCAAAATGCGTTCAACACGGA
AGTTGGGTCTGTCTCCGCATCATCATCACCATAATCATACCCACAACACT
TATGCCACACGCCCACACAACATACAGGCTCTCACATTGCATGTGGCGCC
CCTCCTAGCCTTTTACCGACACGTCATGC
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protein sequence of jgi.p|Nanoce1779_2|584984

>mRNA_3224-protein ID=mRNA_3224-protein|Name=jgi.p|Nanoce1779_2|584984|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MCMSIESVMSTWNEALNVHNGPAGAHLHPWACPILFFILCFSCLTQSDAS
HTCPHSEAKDFVMLRVEGDFQSKCVQHGSWVCLRIIITIIIPTTLMPHAH
TTYRLSHCMWRPS*
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mRNA from alignment at scaffold_7:949763..950141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3224 ID=mRNA_3224|Name=jgi.p|Nanoce1779_2|584984|organism=Nannochloropsis oceanica|type=mRNA|length=379bp|location=Sequence derived from alignment at scaffold_7:949763..950141+ (Nannochloropsis oceanica)
GTGATGTGTGTGATGTATGTGCATGAGTATTGAGAGCGTGATGTCTACAT
GGAATGAGGCTCTCAACGTTCATAACGGCCCCGCCGGCGCCCACCTGCAC
CCATGGGCATGTCCTATTCTCTTTTTTATCCTTTGTTTTTCCTGTCTTAC
TCAATCCGATGCATCACACACTTGTCCACACAGCGAAGCCAAGGATTTTG
TGATGCTTCGAGTTGAGGGGGATTTCCAGTCAAAATGCGTTCAACACGGA
AGTTGGGTCTGTCTCCGCATCATCATCACCATAATCATACCCACAACACT
TATGCCACACGCCCACACAACATACAGGCTCTCACATTGCATGTGGCGCC
CCTCCTAGCCTTTTACCGACACGTCATGC
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Coding sequence (CDS) from alignment at scaffold_7:949763..950141+

>mRNA_3224 ID=mRNA_3224|Name=jgi.p|Nanoce1779_2|584984|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_7:949763..950141+ (Nannochloropsis oceanica)
ATGTGCATGAGTATTGAGAGCGTGATGTCTACATGGAATGAGGCTCTCAA
CGTTCATAACGGCCCCGCCGGCGCCCACCTGCACCCATGGGCATGTCCTA
TTCTCTTTTTTATCCTTTGTTTTTCCTGTCTTACTCAATCCGATGCATCA
CACACTTGTCCACACAGCGAAGCCAAGGATTTTGTGATGCTTCGAGTTGA
GGGGGATTTCCAGTCAAAATGCGTTCAACACGGAAGTTGGGTCTGTCTCC
GCATCATCATCACCATAATCATACCCACAACACTTATGCCACACGCCCAC
ACAACATACAGGCTCTCACATTGCATGTGGCGCCCCTCCTAG
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Synonyms
Publications