jgi.p|Nanoce1779_2|584983, mRNA_3223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584983
Unique NamemRNA_3223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_7:948295..949490 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585069
TrackFilteredModels2
ProteinId584983
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:948295..949490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584983gene_3223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584983mRNA_3223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3223CDS_3223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3223 ID=mRNA_3223|Name=jgi.p|Nanoce1779_2|584983|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACAGGCCCCA
GTCTTCAATGCGGCACGCGGCGCCGCCTCTTCCAAGCAACAATCCGGGTG
GAATGGCTGCCACACGCAGCGAGACCAAGCAAAAGCTTGCTTCCATCATC
GATGGTTTCTCCCACTTAGACCTGGAAGTAAAAATGGGCACCCAACAAAG
GCGAGAGAAAGACGAGTCCCGCCTCCAAGAGCTCCGGGCCTCAGTCATTA
AAATTGACAAGGCACTCTCCGCCGAAATCAAACGCGGGCTGGAACGAAAC
AAGGCGCTGGAAAAATGGGCAGAGGAGCAATTGGCGGCCACGGCGAATAG
CTTTTCGGCCCGTCTTGAGGAGCGGACGCAGGAGGCCCAGGAACGGTTGG
GGGTTTTGAGGAACAGGGTGGATTCATTGGAAGAGTTTTTTGCGCGAGAG
AAGGAGCAGGCCTTGGGGATTGTAGAGGAACGAGGGACAGTGCTGACACA
GACATTGGCGGAATTGCAAGAGGGTGTGGATGTGGAAAGGAGGGAGAGGT
TGGAGAGGGAGGGACGGTTGTTGAGGCAGTTGGGGGAGCATGAGCAGGAG
GTGGCGTTAAGGTTCGAACAGGAGAGGACATCGCGCGAGACGAAGCTTAG
TGAGTTAAAGCAGAATTTGGAGGAATTTATACGGGCCAGAAAGAAGGTGG
ATGATCGGTTTCAGGCTTTTGTATCGGAGGAGTTGGGGGCATTGAAAGGG
GAGTTGGCAAGGGAGGCGGCGGCGAGGGCGAGGGAGGATGATGAGATTGT
GGAGGCTTTGGGGAGATATACGAGTAAATTGCAGCATAGCTTGAAGATAG
TAAACGCAGCGGCGTTGGGAGGAGGGTATGGGGGTGGAGGAGGAGGGCGA
GGAGGGTATGCGGGTGAGTTTGTGTCTGGGTCGGGTGATTTGTAAGAAGG
GGAAGAGGGAAGGGAACGAGGGATGGACGGAGGGCAATGCAGGTAGAATG
AACAAACCAAATGAATCGGGAAGAGGAAGGAGGGAGAAGGCAGATTCCGG
AGCCCAGGTCGGAAGAGGTGAAAAGTAAGAGGAAACTTATCGATGGGACA
TAGAAAGAAGCATGGAAGAAAGAAGAGTTAGAGTAGAGTTGTATTAGAAA
ATTAAGGCGGTAGAATTGCCTTTTCCTTGGCGTCGCTGGCGATACA
back to top

protein sequence of jgi.p|Nanoce1779_2|584983

>mRNA_3223-protein ID=mRNA_3223-protein|Name=jgi.p|Nanoce1779_2|584983|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MRHAAPPLPSNNPGGMAATRSETKQKLASIIDGFSHLDLEVKMGTQQRRE
KDESRLQELRASVIKIDKALSAEIKRGLERNKALEKWAEEQLAATANSFS
ARLEERTQEAQERLGVLRNRVDSLEEFFAREKEQALGIVEERGTVLTQTL
AELQEGVDVERRERLEREGRLLRQLGEHEQEVALRFEQERTSRETKLSEL
KQNLEEFIRARKKVDDRFQAFVSEELGALKGELAREAAARAREDDEIVEA
LGRYTSKLQHSLKIVNAAALGGGYGGGGGGRGGYAGEFVSGSGDL*
back to top

mRNA from alignment at scaffold_7:948295..949490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3223 ID=mRNA_3223|Name=jgi.p|Nanoce1779_2|584983|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at scaffold_7:948295..949490- (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATACAGGCCCCA
GTCTTCAATGCGGCACGCGGCGCCGCCTCTTCCAAGCAACAATCCGGGTG
GAATGGCTGCCACACGCAGCGAGACCAAGCAAAAGCTTGCTTCCATCATC
GATGGTTTCTCCCACTTAGACCTGGAAGTAAAAATGGGCACCCAACAAAG
GCGAGAGAAAGACGAGTCCCGCCTCCAAGAGCTCCGGGCCTCAGTCATTA
AAATTGACAAGGCACTCTCCGCCGAAATCAAACGCGGGCTGGAACGAAAC
AAGGCGCTGGAAAAATGGGCAGAGGAGCAATTGGCGGCCACGGCGAATAG
CTTTTCGGCCCGTCTTGAGGAGCGGACGCAGGAGGCCCAGGAACGGTTGG
GGGTTTTGAGGAACAGGGTGGATTCATTGGAAGAGTTTTTTGCGCGAGAG
AAGGAGCAGGCCTTGGGGATTGTAGAGGAACGAGGGACAGTGCTGACACA
GACATTGGCGGAATTGCAAGAGGGTGTGGATGTGGAAAGGAGGGAGAGGT
TGGAGAGGGAGGGACGGTTGTTGAGGCAGTTGGGGGAGCATGAGCAGGAG
GTGGCGTTAAGGTTCGAACAGGAGAGGACATCGCGCGAGACGAAGCTTAG
TGAGTTAAAGCAGAATTTGGAGGAATTTATACGGGCCAGAAAGAAGGTGG
ATGATCGGTTTCAGGCTTTTGTATCGGAGGAGTTGGGGGCATTGAAAGGG
GAGTTGGCAAGGGAGGCGGCGGCGAGGGCGAGGGAGGATGATGAGATTGT
GGAGGCTTTGGGGAGATATACGAGTAAATTGCAGCATAGCTTGAAGATAG
TAAACGCAGCGGCGTTGGGAGGAGGGTATGGGGGTGGAGGAGGAGGGCGA
GGAGGGTATGCGGGTGAGTTTGTGTCTGGGTCGGGTGATTTGTAAGAAGG
GGAAGAGGGAAGGGAACGAGGGATGGACGGAGGGCAATGCAGGTAGAATG
AACAAACCAAATGAATCGGGAAGAGGAAGGAGGGAGAAGGCAGATTCCGG
AGCCCAGGTCGGAAGAGGTGAAAAGTAAGAGGAAACTTATCGATGGGACA
TAGAAAGAAGCATGGAAGAAAGAAGAGTTAGAGTAGAGTTGTATTAGAAA
ATTAAGGCGGTAGAATTGCCTTTTCCTTGGCGTCGCTGGCGATACA
back to top

Coding sequence (CDS) from alignment at scaffold_7:948295..949490-

>mRNA_3223 ID=mRNA_3223|Name=jgi.p|Nanoce1779_2|584983|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_7:948295..949490- (Nannochloropsis oceanica)
ATGCGGCACGCGGCGCCGCCTCTTCCAAGCAACAATCCGGGTGGAATGGC
TGCCACACGCAGCGAGACCAAGCAAAAGCTTGCTTCCATCATCGATGGTT
TCTCCCACTTAGACCTGGAAGTAAAAATGGGCACCCAACAAAGGCGAGAG
AAAGACGAGTCCCGCCTCCAAGAGCTCCGGGCCTCAGTCATTAAAATTGA
CAAGGCACTCTCCGCCGAAATCAAACGCGGGCTGGAACGAAACAAGGCGC
TGGAAAAATGGGCAGAGGAGCAATTGGCGGCCACGGCGAATAGCTTTTCG
GCCCGTCTTGAGGAGCGGACGCAGGAGGCCCAGGAACGGTTGGGGGTTTT
GAGGAACAGGGTGGATTCATTGGAAGAGTTTTTTGCGCGAGAGAAGGAGC
AGGCCTTGGGGATTGTAGAGGAACGAGGGACAGTGCTGACACAGACATTG
GCGGAATTGCAAGAGGGTGTGGATGTGGAAAGGAGGGAGAGGTTGGAGAG
GGAGGGACGGTTGTTGAGGCAGTTGGGGGAGCATGAGCAGGAGGTGGCGT
TAAGGTTCGAACAGGAGAGGACATCGCGCGAGACGAAGCTTAGTGAGTTA
AAGCAGAATTTGGAGGAATTTATACGGGCCAGAAAGAAGGTGGATGATCG
GTTTCAGGCTTTTGTATCGGAGGAGTTGGGGGCATTGAAAGGGGAGTTGG
CAAGGGAGGCGGCGGCGAGGGCGAGGGAGGATGATGAGATTGTGGAGGCT
TTGGGGAGATATACGAGTAAATTGCAGCATAGCTTGAAGATAGTAAACGC
AGCGGCGTTGGGAGGAGGGTATGGGGGTGGAGGAGGAGGGCGAGGAGGGT
ATGCGGGTGAGTTTGTGTCTGGGTCGGGTGATTTGTAA
back to top
Synonyms
Publications