jgi.p|Nanoce1779_2|584982, mRNA_3222 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584982
Unique Name	mRNA_3222
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1480
Alignment location	scaffold_7:946427..947906 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585068
Track	FilteredModels2
ProteinId	584982

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:946427..947906 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584982	gene_3222	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584982	mRNA_3222-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3222	CDS_3222	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:946427..947906+
coding sequence from alignment at scaffold_7:946427..947906+

mRNA sequence

>mRNA_3222 ID=mRNA_3222|Name=jgi.p|Nanoce1779_2|584982|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
CAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGTGGAGGAGGG
GGATCGGGGTGGGGGAGGGGAGGAAGTGGAGCGGGCAGCGAGGACAGCAG
CACCAGCAGCGGGATCAACTACAGCCACCATAACAGTAGCACGGGCAGCA
ACGGGCATGGCCACGGCCACCACGCCGCAAATCAGGCGGCTGCCAGCCTC
CTAGCCAAGGAACAAGCCCGCTCCAAAATCGTGACCCGTGTGACCTTTGC
AATATTACTGCTCGTGGTCTTCTTCGGCATCGCCTGGGCGGGGCACCCCT
ACATATTCCTTCTGGTATGTGGCATTCAAATCATGCTCTTCAAAGAACTC
GTGGCGGTACGCTATCGCGCCGCCATGGAAAAAAGAACCCCCCTCTTCCG
GACGCTGCAATGGAGCTGGTTCGTCTCGGCCATGTACTATTCCCACGGGG
ATAGCATTGTCAAAACCCTCCGCGAAGACCGCCTTCTCGACGTCAACGAT
GACGATCAACCAGAAAAATCGTTGATATACTCGTCTTTCGCCATTTTCTC
GGTAGTGTTTGTCGTGACGGTGTTGACCCTCCGTCCAGGGCTGTATAAGT
ACCAAGTTGGCCAATTGGCGTGGACCGTCGTCATCCTCTGTCTCATCGTC
GGACAGCTCAAGGTGGTAGCTCCCAACATTTTCAGTGGCATTTTTTGGTA
CTTTTTTCCCGCGTCATGCATAATGGTGAATGATATAATGGCCTATGTGT
GTGGGATGACGATGGGAAGGAGGTTTGTCAAGCGACCCTTCCTGCGTTTG
AGTCCCAATAAGACATGGGAGGGGTTCGTCGGCGCTTTCTTTTGTACCTT
GTTGTGGGCGTTCTGGTTCTCGGGTTTCTTGTCAAGGTTCCCGTATTTTA
CTTGCTCCTTCAAGCAATTGCGGCCGAGCGCGAATTTCACGTGGCAGGAG
CTATGGCCGGGGACGACGTTTCATCAGGCATGGGTGAGGGGGGGTGCGAT
GCAGCCCGATCGGGTGTTTACGCAGCCCTTTGTGAAATTGCCCGAAGTTT
TGGTGAGACTGCTGAGGGGGAGGTGGACGACGATACCCTGTAAGCCGATA
CAGCTGCATGGGCTTGTGATTGGCGGGTTTGGGAGCCTGGTGGCGCCGTT
CGGGGGGTTTTTAATGAGTGCAATCAAGCGTGCGTACGGCATCAAGGATT
TTGACAGTCTTATCCCGGGGCACGGTGGGGTGACGGATCGTATGGATTGC
CAATTGGTGATGATTTTGTATACTTTTGTCCATTACCAGACATGGATTCG
CCATGTTCCTTTGAATTATGACCGGGTGTGGGATAGTGTGGTGAGCCTGA
GCAAGGAGGAACAGGAAAAGATTTGGGAGGAGCTTGGGAGGTTGGTGGGG
AAATAGGGTGGAAGGGAGGTAGGAAAGGAGTGAGGGGAGGAGGAGCGGGA
GGGAGAACATTTGTCGTAGGTGCCGATGAC

protein sequence of jgi.p|Nanoce1779_2|584982

>mRNA_3222-protein ID=mRNA_3222-protein|Name=jgi.p|Nanoce1779_2|584982|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MLFKELVAVRYRAAMEKRTPLFRTLQWSWFVSAMYYSHGDSIVKTLREDR
LLDVNDDDQPEKSLIYSSFAIFSVVFVVTVLTLRPGLYKYQVGQLAWTVV
ILCLIVGQLKVVAPNIFSGIFWYFFPASCIMVNDIMAYVCGMTMGRRFVK
RPFLRLSPNKTWEGFVGAFFCTLLWAFWFSGFLSRFPYFTCSFKQLRPSA
NFTWQELWPGTTFHQAWVRGGAMQPDRVFTQPFVKLPEVLVRLLRGRWTT
IPCKPIQLHGLVIGGFGSLVAPFGGFLMSAIKRAYGIKDFDSLIPGHGGV
TDRMDCQLVMILYTFVHYQTWIRHVPLNYDRVWDSVVSLSKEEQEKIWEE
LGRLVGK*

mRNA from alignment at scaffold_7:946427..947906+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3222 ID=mRNA_3222|Name=jgi.p|Nanoce1779_2|584982|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp|location=Sequence derived from alignment at scaffold_7:946427..947906+ (Nannochloropsis oceanica)
CAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGTGGAGGAGGG
GGATCGGGGTGGGGGAGGGGAGGAAGTGGAGCGGGCAGCGAGGACAGCAG
CACCAGCAGCGGGATCAACTACAGCCACCATAACAGTAGCACGGGCAGCA
ACGGGCATGGCCACGGCCACCACGCCGCAAATCAGGCGGCTGCCAGCCTC
CTAGCCAAGGAACAAGCCCGCTCCAAAATCGTGACCCGTGTGACCTTTGC
AATATTACTGCTCGTGGTCTTCTTCGGCATCGCCTGGGCGGGGCACCCCT
ACATATTCCTTCTGGTATGTGGCATTCAAATCATGCTCTTCAAAGAACTC
GTGGCGGTACGCTATCGCGCCGCCATGGAAAAAAGAACCCCCCTCTTCCG
GACGCTGCAATGGAGCTGGTTCGTCTCGGCCATGTACTATTCCCACGGGG
ATAGCATTGTCAAAACCCTCCGCGAAGACCGCCTTCTCGACGTCAACGAT
GACGATCAACCAGAAAAATCGTTGATATACTCGTCTTTCGCCATTTTCTC
GGTAGTGTTTGTCGTGACGGTGTTGACCCTCCGTCCAGGGCTGTATAAGT
ACCAAGTTGGCCAATTGGCGTGGACCGTCGTCATCCTCTGTCTCATCGTC
GGACAGCTCAAGGTGGTAGCTCCCAACATTTTCAGTGGCATTTTTTGGTA
CTTTTTTCCCGCGTCATGCATAATGGTGAATGATATAATGGCCTATGTGT
GTGGGATGACGATGGGAAGGAGGTTTGTCAAGCGACCCTTCCTGCGTTTG
AGTCCCAATAAGACATGGGAGGGGTTCGTCGGCGCTTTCTTTTGTACCTT
GTTGTGGGCGTTCTGGTTCTCGGGTTTCTTGTCAAGGTTCCCGTATTTTA
CTTGCTCCTTCAAGCAATTGCGGCCGAGCGCGAATTTCACGTGGCAGGAG
CTATGGCCGGGGACGACGTTTCATCAGGCATGGGTGAGGGGGGGTGCGAT
GCAGCCCGATCGGGTGTTTACGCAGCCCTTTGTGAAATTGCCCGAAGTTT
TGGTGAGACTGCTGAGGGGGAGGTGGACGACGATACCCTGTAAGCCGATA
CAGCTGCATGGGCTTGTGATTGGCGGGTTTGGGAGCCTGGTGGCGCCGTT
CGGGGGGTTTTTAATGAGTGCAATCAAGCGTGCGTACGGCATCAAGGATT
TTGACAGTCTTATCCCGGGGCACGGTGGGGTGACGGATCGTATGGATTGC
CAATTGGTGATGATTTTGTATACTTTTGTCCATTACCAGACATGGATTCG
CCATGTTCCTTTGAATTATGACCGGGTGTGGGATAGTGTGGTGAGCCTGA
GCAAGGAGGAACAGGAAAAGATTTGGGAGGAGCTTGGGAGGTTGGTGGGG
AAATAGGGTGGAAGGGAGGTAGGAAAGGAGTGAGGGGAGGAGGAGCGGGA
GGGAGAACATTTGTCGTAGGTGCCGATGAC

Coding sequence (CDS) from alignment at scaffold_7:946427..947906+

>mRNA_3222 ID=mRNA_3222|Name=jgi.p|Nanoce1779_2|584982|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_7:946427..947906+ (Nannochloropsis oceanica)
ATGCTCTTCAAAGAACTCGTGGCGGTACGCTATCGCGCCGCCATGGAAAA
AAGAACCCCCCTCTTCCGGACGCTGCAATGGAGCTGGTTCGTCTCGGCCA
TGTACTATTCCCACGGGGATAGCATTGTCAAAACCCTCCGCGAAGACCGC
CTTCTCGACGTCAACGATGACGATCAACCAGAAAAATCGTTGATATACTC
GTCTTTCGCCATTTTCTCGGTAGTGTTTGTCGTGACGGTGTTGACCCTCC
GTCCAGGGCTGTATAAGTACCAAGTTGGCCAATTGGCGTGGACCGTCGTC
ATCCTCTGTCTCATCGTCGGACAGCTCAAGGTGGTAGCTCCCAACATTTT
CAGTGGCATTTTTTGGTACTTTTTTCCCGCGTCATGCATAATGGTGAATG
ATATAATGGCCTATGTGTGTGGGATGACGATGGGAAGGAGGTTTGTCAAG
CGACCCTTCCTGCGTTTGAGTCCCAATAAGACATGGGAGGGGTTCGTCGG
CGCTTTCTTTTGTACCTTGTTGTGGGCGTTCTGGTTCTCGGGTTTCTTGT
CAAGGTTCCCGTATTTTACTTGCTCCTTCAAGCAATTGCGGCCGAGCGCG
AATTTCACGTGGCAGGAGCTATGGCCGGGGACGACGTTTCATCAGGCATG
GGTGAGGGGGGGTGCGATGCAGCCCGATCGGGTGTTTACGCAGCCCTTTG
TGAAATTGCCCGAAGTTTTGGTGAGACTGCTGAGGGGGAGGTGGACGACG
ATACCCTGTAAGCCGATACAGCTGCATGGGCTTGTGATTGGCGGGTTTGG
GAGCCTGGTGGCGCCGTTCGGGGGGTTTTTAATGAGTGCAATCAAGCGTG
CGTACGGCATCAAGGATTTTGACAGTCTTATCCCGGGGCACGGTGGGGTG
ACGGATCGTATGGATTGCCAATTGGTGATGATTTTGTATACTTTTGTCCA
TTACCAGACATGGATTCGCCATGTTCCTTTGAATTATGACCGGGTGTGGG
ATAGTGTGGTGAGCCTGAGCAAGGAGGAACAGGAAAAGATTTGGGAGGAG
CTTGGGAGGTTGGTGGGGAAATAG

Synonyms

Publications