jgi.p|Nanoce1779_2|576955, mRNA_322 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576955
Unique Name	mRNA_322
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1801
Alignment location	scaffold_3:796256..798236 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577041
Track	FilteredModels2
ProteinId	576955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:796256..798236 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576955	gene_322	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576955	mRNA_322-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_322	CDS_322	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:796256..798236+
coding sequence from alignment at scaffold_3:796256..798236+

mRNA sequence

>mRNA_322 ID=mRNA_322|Name=jgi.p|Nanoce1779_2|576955|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp
GAAAGTTGCCAAAAGTAGAAGGACGCATGACGATAAGGAGGGCAAAAAGT
TGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCAGACACCAC
AACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTTGGAGCGCC
AGGGTCATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTG
CCTTCGCAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCG
CCAGTTTCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAA
ACGTTCTTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGG
CGTGTGCGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATC
ACGCCTCGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGG
AAGGGGCAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGA
GGTGCGACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGA
AGCGAGTCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAG
AGTGCTTTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACG
GGTGGTGGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGT
TGGAGGCCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAA
GAGTTGGTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAA
GAAGGCATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGA
AAGATCAAAAGCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGAC
ACCACCAGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGG
AAAAGCATTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGA
AGGAGGAAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTA
CACGACATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAA
AAACAGTCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGG
CTCGCTTTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCG
CAGTTGAGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGG
GGGGGCGCTGCTTGTGTATTAGACACCGGGTAAGGAGACTGTGTGGGTTT
CGATAGTGAGGAACCACTGTTATGCAAGGATTCGCACCGCCTTAATGTAG
ATAGTTGATAGTTAACGAGAGGGGTGGTGCACACATGCAAGGGACGACAA
GTCCGCGACAGAAATTTAAAAAAAAAAAACAAAAAACAGGTATATAGTAG
CAAACGATACGGCAAGCCTTCCTGCTTATTACAATTGGTGCGTTTCCGGT
CTCTTTCCTTCACAATTGCCGACTTCGCAATAAGGGACCGCGATGGTTGA
AGACGGCAAAGTCCGGCCGGGAGTCAAAGATGTCTTTGCAGCGATGGGAA
GGGTCTTGGGACAGGTGGGTTGGTCTGAAGGAGCCCGCCCCCAGCAGCGC
CCCTGTCAAGCACAGCAGAAATGCCACGAGCAGGTCCAATAGAACGGCCG
GCATTGAGGGTTTGACTTGCTGCATGGCCTGGTGGGAAGCCCGCATGATC
ATGGTCACACCCGCCAGCAAGAAGGTTTTGGAAATGAGCGTCATTGCGCT
G

protein sequence of jgi.p|Nanoce1779_2|576955

>mRNA_322-protein ID=mRNA_322-protein|Name=jgi.p|Nanoce1779_2|576955|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MPRGSSSVFGSLTGCLRNGNKAKKRPPSSSSASFANRAVAASKKAPTQTF
LDFGQKSLGKRTLCGVCGLLYVNGEAEDEKDHASFCRSISAGLVFQGWKG
QRLVWGAEGKDRVIEVRPGDGGPQLLKMGEVKRVMDQEMGFVPLVEGQSA
LRPTEKAFLYVHDKRVVGCLVAEKIVAAHPVLEAMPSEEWEGRETTAEEL
VHGAKDGRLQECGGKKACKDHAGAENDKQEQKDQKPPPAKMHRVDDKDTT
SNSNSSSSSIGRTKGKALAPPSSQFRQGRKGKEEAAASLLPKGVAYSLHD
MAEATLGVKQVWVSKNSRRKGIARLMLEVARARFYYGFVVPRAKVAFSQL
SNAGYSFARSYTEGGGALLVY*

mRNA from alignment at scaffold_3:796256..798236+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_322 ID=mRNA_322|Name=jgi.p|Nanoce1779_2|576955|organism=Nannochloropsis oceanica|type=mRNA|length=1981bp|location=Sequence derived from alignment at scaffold_3:796256..798236+ (Nannochloropsis oceanica)
GAAAGTTGCCAAAAGTAGAAGGACGCATGACGATAAGGAGGGCAAAAAGT
TGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCAGACACCAC
AACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTTGGAGCGCC
AGGGTCATGCCTAGAGGTAAGTGCCTCAAGAGATTCTCTCCTCATCGGCC
TCAATCTCATCACCCTTTCCCTCTTTTCCACCCTCATCCCCTAATCAGGC
TCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCGCAACGGCAATAA
GGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTTTCGCCAACAGAG
CCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTCTTGGACTTTGGG
CAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTGCGGCCTCCTGTA
CGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCTCGTTCTGCCGGA
GCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGGCAACGACTGGTG
TGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCGACCTGGGGACGG
GGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAGTCATGGACCAAG
AAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCTTTACGGCCTACG
GAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGTGGGGTGTTTGGT
CGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGGCCATGCCATCTG
AGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTGGTACATGGGGCG
AAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGCATGTAAGGATCA
TGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATCAAAAGCCACCAC
CGGCCAAGATGCATCGAGTGGACGATAAGGACACCACCAGCAATAGCAAC
AGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGCATTAGCACCGCC
CTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGGAAGCGGCCGCCA
GCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGACATGGCAGAGGCC
ACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAGTCGCCGGAAAGG
GATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCTTTTACTATGGCT
TTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTGAGCAATGCGGGG
TATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGCGCTGCTTGTGTA
TTAGACACCGGGTAAGGAGACTGTGTGGGTTTCGATAGTGAGGAACCACT
GTTATGCAAGGATTCGCACCGCCTTAATGTAGATAGTTGATAGTTAACGA
GAGGGGTGGTGCACACATGCAAGGGACGACAAGTCCGCGACAGAAATTTA
AAAAAAAAAAACAAAAAACAGGTATATAGTAGCAAACGATACGGCAAGCC
TTCCTGCTTATTACAATTGGTGCGTTTCCGGTCTCTTTCCTTCACAATTG
CCGACTTCGCAATAAGGGACCGCGATGGTTGAAGACGGCAAAGTCCGGCC
GGGAGTCAAAGATGTCTTTGCAGCGATGGGAAGGGTCTTGGGACAGGTGG
GTTGGTCTGAAGGAGCCCGCCCCCAGCAGCGCCCCTGTCAAGCACAGCAG
AAATGCCACGAGCAGGTCCAATAGAACGGCCGGCATTGAGGGTTTGACTG
TCACGTGGCGTGGGGTGTGTGAATAGTGGTGTTGGCAGTTTGCAGATGAT
GGAGGGGCCGAGGGAGAGAGGAAGGAGGGGAGGCAGTACGTTTACCTTGC
TGCATGGCCTGGTGGGAAGCCCGCATGATCATGGTCACACCCGCCAGCAA
GAAGGTTTTGGAAATGAGCGTCATTGCGCTG

Coding sequence (CDS) from alignment at scaffold_3:796256..798236+

>mRNA_322 ID=mRNA_322|Name=jgi.p|Nanoce1779_2|576955|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_3:796256..798236+ (Nannochloropsis oceanica)
ATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCG
CAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTT
TCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTC
TTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTG
CGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCT
CGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGG
CAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCG
ACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAG
TCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCT
TTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGT
GGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGG
CCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTG
GTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGC
ATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATC
AAAAGCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGACACCACC
AGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGC
ATTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGG
AAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGAC
ATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAG
TCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCT
TTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTG
AGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGC
GCTGCTTGTGTATTAGATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTC
TCACGGGTTGCCTTCGCAACGGCAATAAGGCCAAAAAGCGACCACCCTCT
TCTTCCTCCGCCAGTTTCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGC
TCCCACCCAAACGTTCTTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCA
CGCTCTGTGGCGTGTGCGGCCTCCTGTACGTGAACGGTGAGGCCGAGGAC
GAAAAGGATCACGCCTCGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTT
TCAGGGCTGGAAGGGGCAACGACTGGTGTGGGGCGCCGAGGGCAAGGACA
GAGTGATTGAGGTGCGACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATG
GGAGAGGTGAAGCGAGTCATGGACCAAGAAATGGGTTTTGTGCCTTTGGT
AGAAGGCCAGAGTGCTTTACGGCCTACGGAGAAGGCGTTTTTGTATGTGC
ATGACAAACGGGTGGTGGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCG
CATCCAGTGTTGGAGGCCATGCCATCTGAGGAGTGGGAAGGGAGGGAGAC
GACGGCGGAAGAGTTGGTACATGGGGCGAAAGATGGGAGGCTCCAGGAGT
GTGGTGGAAAGAAGGCATGTAAGGATCATGCGGGGGCGGAGAATGACAAG
CAAGAGCAGAAAGATCAAAAGCCACCACCGGCCAAGATGCATCGAGTGGA
CGATAAGGACACCACCAGCAATAGCAACAGCAGCAGCAGCAGCATCGGTC
GTACAAAAGGAAAAGCATTAGCACCGCCCTCATCGCAGTTCCGACAAGGT
AGAAAGGGGAAGGAGGAAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGC
CTACTCCTTACACGACATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCT
GGGTCAGCAAAAACAGTCGCCGGAAAGGGATAGCGAGACTGATGCTAGAA
GTGGCACGGGCTCGCTTTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGT
GGCATTCTCGCAGTTGAGCAATGCGGGGTATTCGTTTGCAAGGTCGTACA
CGGAGGGAGGGGGGGCGCTGCTTGTGTATTAG

Synonyms

Publications