jgi.p|Nanoce1779_2|584963, mRNA_3219 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584963
Unique NamemRNA_3219
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1237
Alignment locationscaffold_7:939536..941050 -

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Properties
Property NameValue
TranscriptId585049
TrackFilteredModels2
ProteinId584963
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:939536..941050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584963gene_3219Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584963mRNA_3219-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3219CDS_3219Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3219 ID=mRNA_3219|Name=jgi.p|Nanoce1779_2|584963|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp
AGACACAGACGCACCACCATCGTGAATGATGACACTGACACCTTCGCTTG
TAACCCGCATCACGCTGCTGCTGGTCACGCTTGCAGCTGTGGCCACCGCC
TTCGTCCCTTCGCGATGCGTCACGCCACTTTCCCCCCCCCTCCCTTGCGG
GCCCTCTTCAAGCGTGGTGTTGCAGGCGAGCAACAATGGTGGGCTGGAGG
GCGTTTTCAAGTTTATCCGAAGCGATGCCCTGTCGTTGGGCGTGGGGTCC
CTCGCCCTCTTGGCCCTGGTCACAAACCGGCTGTACACCGACCCATTGTT
TGATTCTCAGAGCCGCACCGATATCCTGGGCGTATTTTCGGCCGGGGGAT
TGCTCTTGAACGGGCTGACCTTGCAGGACATTACTGTGCGTGAGGCTGAT
GTCATAGAGTTGCAGGGCCCACGCATAGACGAGATAGCGCCCGACAACCT
GCTCACTCCTCGACAAGCCACGGTCCTCCGCTGGGCCGCCGATACCTACC
TGCAAGCTTTTCCAAACACCCCCTCCGTGTTAATCTGGCACAAAAACAAG
ACAATACTTCGCAAAGGTATCATGTCTGAGGTGGGTGACGAGCTGGAGGT
GCTAGCGATTGTACACAAGGCTCTAGCCATGCCCCCGGACAGGGATGGGT
TGAGCCAGCCTACCTACATCCCCGATTTGCAGGTCTTGCCGGGTAAGGTA
GAATTTATGAGGTATTTGCCTGCCTTGTGTCAGGCGGTAGTGTTGCAGCC
ATTCGATAATAACAAGGGATTGATCGTGTTAGGCGGGAATAAACGGCGGG
ATCTAACGCCGAAGGACCTGGCCAAAGCGAGGGTGGTGGCACAGAAGGTG
CAGAGTTCCTTGTCAGAATGAAGAAGGGAGGGAAGGCAACAGCACGTTTA
TGTGGGTTATAGTCTTCAACATTGTTTCGGTTCTTTGTACAAAATTCATT
TCTTGTAAATTTACATACACGCCGGCACGCTGCGAGCTCCAAAAAGAAGG
AATAACATCGTGACCAATTTCACTTCTTCTTCGCCAGATTATTCTTCTAC
CGTTCGTCGCTCCCGTTGATCCATTCTCTACTGCTTCAAAAACAGCTTCT
TTCTTCCAAGTCAAAATCCATGTACTCCGACGCTTTTTCGAACTCTTCCT
GCGCCCGCCTCACCTCCTCCCTCTTTCCCTCCCTCCCAACCTGCGCCTGT
AACGCCAACACTAAACCCTTGGAGCTCCAGATATTGC
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protein sequence of jgi.p|Nanoce1779_2|584963

>mRNA_3219-protein ID=mRNA_3219-protein|Name=jgi.p|Nanoce1779_2|584963|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MMTLTPSLVTRITLLLVTLAAVATAFVPSRCVTPLSPPLPCGPSSSVVLQ
ASNNGGLEGVFKFIRSDALSLGVGSLALLALVTNRLYTDPLFDSQSRTDI
LGVFSAGGLLLNGLTLQDITVREADVIELQGPRIDEIAPDNLLTPRQATV
LRWAADTYLQAFPNTPSVLIWHKNKTILRKGIMSEVGDELEVLAIVHKAL
AMPPDRDGLSQPTYIPDLQVLPGKVEFMRYLPALCQAVVLQPFDNNKGLI
VLGGNKRRDLTPKDLAKARVVAQKVQSSLSE*
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mRNA from alignment at scaffold_7:939536..941050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3219 ID=mRNA_3219|Name=jgi.p|Nanoce1779_2|584963|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_7:939536..941050- (Nannochloropsis oceanica)
AGACACAGACGCACCACCATCGTGAATGATGACACTGACACCTTCGCTTG
TAACCCGCATCACGCTGCTGCTGGTCACGCTTGCAGCTGTGGCCACCGCC
TTCGTCCCTTCGCGATGCGTCACGCCACTTTCCCCCCCCCTCCCTTGCGG
GCCCTCTTCAAGCGTGGTGTTGCAGGCGAGCAACAATGGTGGGCTGGAGG
GCGTTTTCAAGTTTATCCGAAGCGATGCCCTGTCGTTGGGCGTGGGGTCC
CTCGCCCTCTTGGCCCTGGTCACAAACCGGCTGTACACCGACCCATTGTT
TGATTCTCAGAGCCGCACCGATATCCTGGGCGTATTTTCGGCCGGGGGAT
TGCTCTTGAACGGGCTGACCTTGCAGGTGAGTTTGATGAAGAGAAGAGTC
AGAGCTCCTAGTATGTCTCTCCCTTTCAGGTGCCGTTCTTAACTCCTTTT
GCAATGGCACAATTTCAAAGTATTTCTCTGCAAGGTTTTGTCGCGACTGT
ACTTTTTTGTGCCTCGGCATACCTCGACTAACCTCATGAAGGCAGGCTCC
CTTCCGCCGCCGTTTGCGCTGAGCAACTGCAATTCTCAAACAAATCAAAC
GAAGCACTCTCACCTGCTTACCCAACCACCTCTTTCGTCCAAACACTCTA
CCAGGACATTACTGTGCGTGAGGCTGATGTCATAGAGTTGCAGGGCCCAC
GCATAGACGAGATAGCGCCCGACAACCTGCTCACTCCTCGACAAGCCACG
GTCCTCCGCTGGGCCGCCGATACCTACCTGCAAGCTTTTCCAAACACCCC
CTCCGTGTTAATCTGGCACAAAAACAAGACAATACTTCGCAAAGGTATCA
TGTCTGAGGTGGGTGACGAGCTGGAGGTGCTAGCGATTGTACACAAGGCT
CTAGCCATGCCCCCGGACAGGGATGGGTTGAGCCAGCCTACCTACATCCC
CGATTTGCAGGTCTTGCCGGGTAAGGTAGAATTTATGAGGTATTTGCCTG
CCTTGTGTCAGGCGGTAGTGTTGCAGCCATTCGATAATAACAAGGGATTG
ATCGTGTTAGGCGGGAATAAACGGCGGGATCTAACGCCGAAGGACCTGGC
CAAAGCGAGGGTGGTGGCACAGAAGGTGCAGAGTTCCTTGTCAGAATGAA
GAAGGGAGGGAAGGCAACAGCACGTTTATGTGGGTTATAGTCTTCAACAT
TGTTTCGGTTCTTTGTACAAAATTCATTTCTTGTAAATTTACATACACGC
CGGCACGCTGCGAGCTCCAAAAAGAAGGAATAACATCGTGACCAATTTCA
CTTCTTCTTCGCCAGATTATTCTTCTACCGTTCGTCGCTCCCGTTGATCC
ATTCTCTACTGCTTCAAAAACAGCTTCTTTCTTCCAAGTCAAAATCCATG
TACTCCGACGCTTTTTCGAACTCTTCCTGCGCCCGCCTCACCTCCTCCCT
CTTTCCCTCCCTCCCAACCTGCGCCTGTAACGCCAACACTAAACCCTTGG
AGCTCCAGATATTGC
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Coding sequence (CDS) from alignment at scaffold_7:939536..941050-

>mRNA_3219 ID=mRNA_3219|Name=jgi.p|Nanoce1779_2|584963|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_7:939536..941050- (Nannochloropsis oceanica)
GACATTACTGTGCGTGAGGCTGATGTCATAGAGTTGCAGGGCCCACGCAT
AGACGAGATAGCGCCCGACAACCTGCTCACTCCTCGACAAGCCACGGTCC
TCCGCTGGGCCGCCGATACCTACCTGCAAGCTTTTCCAAACACCCCCTCC
GTGTTAATCTGGCACAAAAACAAGACAATACTTCGCAAAGGTATCATGTC
TGAGGTGGGTGACGAGCTGGAGGTGCTAGCGATTGTACACAAGGCTCTAG
CCATGCCCCCGGACAGGGATGGGTTGAGCCAGCCTACCTACATCCCCGAT
TTGCAGGTCTTGCCGGGTAAGGTAGAATTTATGAGGTATTTGCCTGCCTT
GTGTCAGGCGGTAGTGTTGCAGCCATTCGATAATAACAAGGGATTGATCG
TGTTAGGCGGGAATAAACGGCGGGATCTAACGCCGAAGGACCTGGCCAAA
GCGAGGGTGGTGGCACAGAAGGTGCAGAGTTCCTTGTCAGAATGAATGAT
GACACTGACACCTTCGCTTGTAACCCGCATCACGCTGCTGCTGGTCACGC
TTGCAGCTGTGGCCACCGCCTTCGTCCCTTCGCGATGCGTCACGCCACTT
TCCCCCCCCCTCCCTTGCGGGCCCTCTTCAAGCGTGGTGTTGCAGGCGAG
CAACAATGGTGGGCTGGAGGGCGTTTTCAAGTTTATCCGAAGCGATGCCC
TGTCGTTGGGCGTGGGGTCCCTCGCCCTCTTGGCCCTGGTCACAAACCGG
CTGTACACCGACCCATTGTTTGATTCTCAGAGCCGCACCGATATCCTGGG
CGTATTTTCGGCCGGGGGATTGCTCTTGAACGGGCTGACCTTGCAGGACA
TTACTGTGCGTGAGGCTGATGTCATAGAGTTGCAGGGCCCACGCATAGAC
GAGATAGCGCCCGACAACCTGCTCACTCCTCGACAAGCCACGGTCCTCCG
CTGGGCCGCCGATACCTACCTGCAAGCTTTTCCAAACACCCCCTCCGTGT
TAATCTGGCACAAAAACAAGACAATACTTCGCAAAGGTATCATGTCTGAG
GTGGGTGACGAGCTGGAGGTGCTAGCGATTGTACACAAGGCTCTAGCCAT
GCCCCCGGACAGGGATGGGTTGAGCCAGCCTACCTACATCCCCGATTTGC
AGGTCTTGCCGGGTAAGGTAGAATTTATGAGGTATTTGCCTGCCTTGTGT
CAGGCGGTAGTGTTGCAGCCATTCGATAATAACAAGGGATTGATCGTGTT
AGGCGGGAATAAACGGCGGGATCTAACGCCGAAGGACCTGGCCAAAGCGA
GGGTGGTGGCACAGAAGGTGCAGAGTTCCTTGTCAGAATGAATGATGACA
CTGACACCTTCGCTTGTAACCCGCATCACGCTGCTGCTGGTCACGCTTGC
AGCTGTGGCCACCGCCTTCGTCCCTTCGCGATGCGTCACGCCACTTTCCC
CCCCCCTCCCTTGCGGGCCCTCTTCAAGCGTGGTGTTGCAGGCGAGCAAC
AATGGTGGGCTGGAGGGCGTTTTCAAGTTTATCCGAAGCGATGCCCTGTC
GTTGGGCGTGGGGTCCCTCGCCCTCTTGGCCCTGGTCACAAACCGGCTGT
ACACCGACCCATTGTTTGATTCTCAGAGCCGCACCGATATCCTGGGCGTA
TTTTCGGCCGGGGGATTGCTCTTGAACGGGCTGACCTTGCAG
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Synonyms
Publications