jgi.p|Nanoce1779_2|584959, mRNA_3217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584959
Unique Name	mRNA_3217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1773
Alignment location	scaffold_7:935778..937550 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585045
Track	FilteredModels2
ProteinId	584959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:935778..937550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584959	gene_3217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584959	mRNA_3217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3217	CDS_3217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:935778..937550+
coding sequence from alignment at scaffold_7:935778..937550+

mRNA sequence

>mRNA_3217 ID=mRNA_3217|Name=jgi.p|Nanoce1779_2|584959|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCTCTTCTTCCT
TCCCCTTTTTACCTTCCTATCCACCACTTCCTCCTCCTCATGCTGCTGCT
GCTCCTTCCTTAAACGTGGTGGGTCCTCCCTCAATAGAAATGCCGTCGAT
GGTAGGAGCATTTTATCCACTCGATCCATCTTGCGCACCTCCTCAATCAT
CTTCTTCCTTGCCTCCGGTTCCTCCATCCCAGACAGCCGCATGACCTGTT
GCACCTCGATCCCCCGTTTAAACCTCAAAAACGGGATCCGTTCCAACGGC
ACCGTCTCATGACTCGACCACAACGTCTCATACAGCTCTTGCACGTTCTC
AATCTCCGCAGGAGTGATGGCCCCCTGTGTTATTTGCCGCACGGTCGCCG
CAAGTGTCTCTCGGACCACCCGAGGGTCTTGTACCGTTATCCCAACCGGA
AACGTCCCATGTATCGTCAAACGCTGCACACAATCCCTCCCTCCCCCAAG
ATCTCCGGAAGGACGGGGCACCAGAATGGTGAACGCGTTCGGACGATTCG
CACGCTGCCATCGTAGGGAGCCTAGAAGGGAACGCAGGTGCCCGGGATCT
TCGACTTCCAGACGGTTCACGGTTTTGGTAAGGGATAACCAGAACCCTGC
TTCGTTCAAACGACGTTTCCCCAAGCAAGCCTCGCCTAACAAGCGCACTA
TAAACTCGTAGAGGCTATGCCCCAGCTTCCGTGGATGCACGCCACCGTCG
CCACAGGCATTGCTGCTGCTGATCATACTACCACTGCTGCTACTGCTCCC
GTTGCCCGAGCCTCCAACTCCCCCCATTCCTCCTTCTCCTCCACCTCTCC
CTCCACCATCACCACTTTCAGCAGCAAGAAGCAACTCTCTCTTAAGCTCT
CCTTCTTCCCCTCCTTCCCCTCCTTCCACTTCTCCTCCTTCTCCTCTTCC
TCCTCCTCCTCCTCCTCCTGCCACTCCGATCCCGCCATTCAACGCCTTCC
CCCCCTTCTTGTCATCCACATCCATAAACACAAAGCCATGCGGTGCCGGC
TTACACACAGCCTTGATAACCAACAAAATACTCTCATAATCTGCACCCAA
ATCCCTTTTCCGCTTCCCGTAACAAGAGGAGATGACCCCAGGCAAAGGGG
GCAACGCGGGAGAGGCGTTGGGATTCTTTTTCCCTCCTTTCGTTAGAGGA
GTGTATGAGATCGGAGCGCTACCACAACCGTCATTGCCGCCGCCGGAAGA
GAAGGCAGTGGAGAAGGAGGAGGAGGTGAAAAAGGAGGGAGGCTTATGCT
TCTTATTCTTGGCCGGTTTGGGTGCCCGCTGCGGCTGTGGCTCTTTTGAA
ACCATCGGTTGGGCGCGTTGCTCCTCCTCATAATTGTCGTCTGCATTATA
GCAACCAACCCCACCACGCACCGTACCCATGGCACTGCTCGCACCGCCTC
CGCTGCCCCTACCTCCCCCGCATGGTGGGCTACCCGCGTATGGAGGCTGC
GCCAAGGACGGGATGGTGATGAAAGGTGGCGGAGGGGGGCTTGGAGGAGG
TGGCAGCAGTACAACCCCGTCATTTCCACCTCCCCCTGTACCTTCGCTCG
CACCTGGTGGCCTTGGCGGAGATGACAAAAAAGCCATCGGAGCAGAGCGG
GTGGAGGTAGTTGACGAGGGCGGGACGCTGCTTTGAGACAGATCCATTTC
ACTGGCGCAACTGCTTCCGCCGCACGGATAGGTCGTCCGTGTAGCTTAGT
GTTATCGTCTCGTATCTGCCTGT

protein sequence of jgi.p|Nanoce1779_2|584959

>mRNA_3217-protein ID=mRNA_3217-protein|Name=jgi.p|Nanoce1779_2|584959|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPQLPWMHATVATGIAAADHTTTAATAPVARASNSPHSSFSSTSPSTITT
FSSKKQLSLKLSFFPSFPSFHFSSFSSSSSSSSSCHSDPAIQRLPPLLVI
HIHKHKAMRCRLTHSLDNQQNTLIICTQIPFPLPVTRGDDPRQRGQRGRG
VGILFPSFR*

mRNA from alignment at scaffold_7:935778..937550+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3217 ID=mRNA_3217|Name=jgi.p|Nanoce1779_2|584959|organism=Nannochloropsis oceanica|type=mRNA|length=1773bp|location=Sequence derived from alignment at scaffold_7:935778..937550+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGTCTCTCTTCTTCCT
TCCCCTTTTTACCTTCCTATCCACCACTTCCTCCTCCTCATGCTGCTGCT
GCTCCTTCCTTAAACGTGGTGGGTCCTCCCTCAATAGAAATGCCGTCGAT
GGTAGGAGCATTTTATCCACTCGATCCATCTTGCGCACCTCCTCAATCAT
CTTCTTCCTTGCCTCCGGTTCCTCCATCCCAGACAGCCGCATGACCTGTT
GCACCTCGATCCCCCGTTTAAACCTCAAAAACGGGATCCGTTCCAACGGC
ACCGTCTCATGACTCGACCACAACGTCTCATACAGCTCTTGCACGTTCTC
AATCTCCGCAGGAGTGATGGCCCCCTGTGTTATTTGCCGCACGGTCGCCG
CAAGTGTCTCTCGGACCACCCGAGGGTCTTGTACCGTTATCCCAACCGGA
AACGTCCCATGTATCGTCAAACGCTGCACACAATCCCTCCCTCCCCCAAG
ATCTCCGGAAGGACGGGGCACCAGAATGGTGAACGCGTTCGGACGATTCG
CACGCTGCCATCGTAGGGAGCCTAGAAGGGAACGCAGGTGCCCGGGATCT
TCGACTTCCAGACGGTTCACGGTTTTGGTAAGGGATAACCAGAACCCTGC
TTCGTTCAAACGACGTTTCCCCAAGCAAGCCTCGCCTAACAAGCGCACTA
TAAACTCGTAGAGGCTATGCCCCAGCTTCCGTGGATGCACGCCACCGTCG
CCACAGGCATTGCTGCTGCTGATCATACTACCACTGCTGCTACTGCTCCC
GTTGCCCGAGCCTCCAACTCCCCCCATTCCTCCTTCTCCTCCACCTCTCC
CTCCACCATCACCACTTTCAGCAGCAAGAAGCAACTCTCTCTTAAGCTCT
CCTTCTTCCCCTCCTTCCCCTCCTTCCACTTCTCCTCCTTCTCCTCTTCC
TCCTCCTCCTCCTCCTCCTGCCACTCCGATCCCGCCATTCAACGCCTTCC
CCCCCTTCTTGTCATCCACATCCATAAACACAAAGCCATGCGGTGCCGGC
TTACACACAGCCTTGATAACCAACAAAATACTCTCATAATCTGCACCCAA
ATCCCTTTTCCGCTTCCCGTAACAAGAGGAGATGACCCCAGGCAAAGGGG
GCAACGCGGGAGAGGCGTTGGGATTCTTTTTCCCTCCTTTCGTTAGAGGA
GTGTATGAGATCGGAGCGCTACCACAACCGTCATTGCCGCCGCCGGAAGA
GAAGGCAGTGGAGAAGGAGGAGGAGGTGAAAAAGGAGGGAGGCTTATGCT
TCTTATTCTTGGCCGGTTTGGGTGCCCGCTGCGGCTGTGGCTCTTTTGAA
ACCATCGGTTGGGCGCGTTGCTCCTCCTCATAATTGTCGTCTGCATTATA
GCAACCAACCCCACCACGCACCGTACCCATGGCACTGCTCGCACCGCCTC
CGCTGCCCCTACCTCCCCCGCATGGTGGGCTACCCGCGTATGGAGGCTGC
GCCAAGGACGGGATGGTGATGAAAGGTGGCGGAGGGGGGCTTGGAGGAGG
TGGCAGCAGTACAACCCCGTCATTTCCACCTCCCCCTGTACCTTCGCTCG
CACCTGGTGGCCTTGGCGGAGATGACAAAAAAGCCATCGGAGCAGAGCGG
GTGGAGGTAGTTGACGAGGGCGGGACGCTGCTTTGAGACAGATCCATTTC
ACTGGCGCAACTGCTTCCGCCGCACGGATAGGTCGTCCGTGTAGCTTAGT
GTTATCGTCTCGTATCTGCCTGT

Coding sequence (CDS) from alignment at scaffold_7:935778..937550+

>mRNA_3217 ID=mRNA_3217|Name=jgi.p|Nanoce1779_2|584959|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_7:935778..937550+ (Nannochloropsis oceanica)
ATGCCCCAGCTTCCGTGGATGCACGCCACCGTCGCCACAGGCATTGCTGC
TGCTGATCATACTACCACTGCTGCTACTGCTCCCGTTGCCCGAGCCTCCA
ACTCCCCCCATTCCTCCTTCTCCTCCACCTCTCCCTCCACCATCACCACT
TTCAGCAGCAAGAAGCAACTCTCTCTTAAGCTCTCCTTCTTCCCCTCCTT
CCCCTCCTTCCACTTCTCCTCCTTCTCCTCTTCCTCCTCCTCCTCCTCCT
CCTGCCACTCCGATCCCGCCATTCAACGCCTTCCCCCCCTTCTTGTCATC
CACATCCATAAACACAAAGCCATGCGGTGCCGGCTTACACACAGCCTTGA
TAACCAACAAAATACTCTCATAATCTGCACCCAAATCCCTTTTCCGCTTC
CCGTAACAAGAGGAGATGACCCCAGGCAAAGGGGGCAACGCGGGAGAGGC
GTTGGGATTCTTTTTCCCTCCTTTCGTTAG

Synonyms

Publications