jgi.p|Nanoce1779_2|400883, mRNA_3216 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|400883
Unique Name	mRNA_3216
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2381
Alignment location	scaffold_7:931999..934379 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	400969
Track	FilteredModels2
ProteinId	400883

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:931999..934379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|400883	gene_3216	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|400883	mRNA_3216-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3216	CDS_3216	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:931999..934379+
coding sequence from alignment at scaffold_7:931999..934379+

mRNA sequence

>mRNA_3216 ID=mRNA_3216|Name=jgi.p|Nanoce1779_2|400883|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
AAGGAGCAGCGAGCACACACTGTCGATCTATGATCGAACTCGACCCTTCG
ATTTCCATGCCAAACAACCACTGTGTACATACCGTGTCCCACACAGACAC
AAAGCTGACGACCAAGTCGGCCTGTTGGCCTGAAATCTATGGCGAGAATT
GTTTCGCGATCCGAAAATGAGACATCAAATCAAGGTGAGTGAGTGCATAA
AAGCGTAGTGGGGACTCCCTCTCGGAGGTCAACCGATTCCCATACTCGTC
CTTTAATCTCGATCTTCTGGAGCCGTGCACACCATGAAAGACCTCACTTT
GACTGCCACATCGGGCATCCATGCGTGTCAATCGTCTTTCTGGCAGTCGC
ATTGCTGAAGCAATTTGTCCCCTTTCTCAAGCCCCTTCATTCGCCACTTT
CTTCTCATGCCCCATACCGCTCTCTACACCAGACGCTCCTCCAGCTTCCA
AACTGGGGCCTATAGCAAAAAGGCTGGTGCAACGCCGGCGGGCTCGCGGC
GACACGAGTCACTGGCTTTCGGATCAGAAGGTTTGTTCGTGTATGCGTTG
CTCGACGACTTTCACTGTCGTCTTTCGCAAACACCACTGTAGAGCATGCG
GCGCAGTGATTTGTCAATCTTGCTCTCATTTCATAGAGCCTGAGTTTATC
TTTGAAGATAGCAGCAAGACCACCTCCAGCAACCCTGTTGTCACCCTTGC
CTCCTTGCGGGCTGTGGCTGCACCCCCGTCGGCCACTGTTCGTGTATGTG
GACCTTGCGCGGTGTCGACTCATAAGGTAGTCGTCGCTCAAGATGTGCCC
TTCGATGTTGGCAAGGTGGAGGTAGCGATCGATCAAACGCCAGCATATGT
CTACGCGTTGTATCACAAAACTGAAGAGCTCTTTGTCGGTAGTCTTTCCG
CAGTCTGTGTTCAAGCCCGGGGCCTGCCCGCAGCAGATGTTAATAGGCTC
GCGGATCCCTACGTAAATTTTACCCTGACAGGGTACACGCTGTCAGGAGG
ACTGGAGTGGCCCGAGGCCATGCGTGAGACATACAAGACAGGCACGAGAT
ACGCAACCTTGAACCCTATTTGGGGCGGGGCAGAACATTTTCATTGGAGG
GTGCCAAGGGCAGAAGCGGTGTTGAGGGTGGAAATACTTGATTGGGATAT
AGGTATGAGTCATGATGTGTTAAGTGCAGTCGAGATTCCGCTTGCGGGAT
TGTTGCATCAGCGAAGGGTGGATGTGTGGGTGCCTTTGGTGTCGTTCGAG
GATGGGGATGGCGGGGGGGAGGTACGCTTGATCATACAGTATAAATTTAA
TAGGGCAGGGGAGGCGTTATCAAGGTTTTGGGCGGAACCGGTGTGTCCAA
GGGAGGTGGTGGGATTTAGTCCCAAGAGAACATATAAGCATGTAATGGAT
TTGATGGAGGAATTGATGCCTTACACGGCTTTGCTTGCCCAGGTTGGGAT
GGTCTTGAAGTGGGAGAAGCCAGTGATGACCTTGAGTGTGTTTGGGGTAC
TTGTGGCGCTCACGATGAATCCAAAGTATGCGTTTTCGTTCATCCAGTTT
GCTATGGTTGTGTACCTTGGGTTTATGTATGTGTGTCGGAAGGGCAGGCA
GCATGCAAGGGATGTGGAGGAGGCGAAGAAAAACAAATTGACGTTGAGGG
AATTTTTGGCGCGACGGCGGCAAACGGGCAAGGGGGTGGTAGGAAGATTG
GCAACTCTGAGGTCGGGTGTGAGGAGAAGGAGGAGTAGTAGTGGTGCTGT
TGGAAAGGGGAGGGAGATGGAGAGGGAGGAGAGAGGGATTGATGGTAGTA
GTGGCACTAGCACCAGCAGTGGCGGGGGGTTGGCCATGACGGAGGAGCAG
AAGAAGCAGCAAGAAGAGGAGCAGCAGGGGATTGTATCTCTGGGTCTTGT
CGTGAATTTTCTCGGGAGTCGTATCGGGCGAAACGAGGCGACGACGAATC
TGCAGAACGCATTGGGGATGCTCGTCCTCCTTCTACAATCGATCCGCCAG
CTTTTAGAGTGGGACTCACCCGTGATAACATCCGCTTTTATGGTACTTTT
GATAGGGAGTGCCATTGTGCATTTATTCGTGAGTGTGACATGGTTGTTCT
TGCTGGGGGAAGCGGTGATTTTCCAGTTGTTTACTTGGCCTTTGCAGGTG
GGGGCGTGGTGGGTAGTGCGGGTTGGGAAGGCCCTGTCGTCCCTTCTGAC
GCAAGCAATGTACTCGTTGATGCGTCAAGGGAAGGTGCCTGGGGAGGTAG
TGCTCGGGAAGGAGGAGAAAAAAGTGTAAGAGTAGATGAAAGGAGATTGA
GGAGGGGGGTGACGGATGGAAATGTGGTTGGTGTTGTGATGTGGTGGGTG
TGCCTTCACGAATGAATTTAGAGACGAGGGG

protein sequence of jgi.p|Nanoce1779_2|400883

>mRNA_3216-protein ID=mRNA_3216-protein|Name=jgi.p|Nanoce1779_2|400883|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MRVNRLSGSRIAEAICPLSQAPSFATFFSCPIPLSTPDAPPASKLGPIAK
RLVQRRRARGDTSHWLSDQKVCSCMRCSTTFTVVFRKHHCRACGAVICQS
CSHFIEPEFIFEDSSKTTSSNPVVTLASLRAVAAPPSATVRVCGPCAVST
HKVVVAQDVPFDVGKVEVAIDQTPAYVYALYHKTEELFVGSLSAVCVQAR
GLPAADVNRLADPYVNFTLTGYTLSGGLEWPEAMRETYKTGTRYATLNPI
WGGAEHFHWRVPRAEAVLRVEILDWDIGMSHDVLSAVEIPLAGLLHQRRV
DVWVPLVSFEDGDGGGEVRLIIQYKFNRAGEALSRFWAEPVCPREVVGFS
PKRTYKHVMDLMEELMPYTALLAQVGMVLKWEKPVMTLSVFGVLVALTMN
PKYAFSFIQFAMVVYLGFMYVCRKGRQHARDVEEAKKNKLTLREFLARRR
QTGKGVVGRLATLRSGVRRRRSSSGAVGKGREMEREERGIDGSSGTSTSS
GGGLAMTEEQKKQQEEEQQGIVSLGLVVNFLGSRIGRNEATTNLQNALGM
LVLLLQSIRQLLEWDSPVITSAFMVLLIGSAIVHLFVSVTWLFLLGEAVI
FQLFTWPLQVGAWWVVRVGKALSSLLTQAMYSLMRQGKVPGEVVLGKEEK
KV*

mRNA from alignment at scaffold_7:931999..934379+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3216 ID=mRNA_3216|Name=jgi.p|Nanoce1779_2|400883|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at scaffold_7:931999..934379+ (Nannochloropsis oceanica)
AAGGAGCAGCGAGCACACACTGTCGATCTATGATCGAACTCGACCCTTCG
ATTTCCATGCCAAACAACCACTGTGTACATACCGTGTCCCACACAGACAC
AAAGCTGACGACCAAGTCGGCCTGTTGGCCTGAAATCTATGGCGAGAATT
GTTTCGCGATCCGAAAATGAGACATCAAATCAAGGTGAGTGAGTGCATAA
AAGCGTAGTGGGGACTCCCTCTCGGAGGTCAACCGATTCCCATACTCGTC
CTTTAATCTCGATCTTCTGGAGCCGTGCACACCATGAAAGACCTCACTTT
GACTGCCACATCGGGCATCCATGCGTGTCAATCGTCTTTCTGGCAGTCGC
ATTGCTGAAGCAATTTGTCCCCTTTCTCAAGCCCCTTCATTCGCCACTTT
CTTCTCATGCCCCATACCGCTCTCTACACCAGACGCTCCTCCAGCTTCCA
AACTGGGGCCTATAGCAAAAAGGCTGGTGCAACGCCGGCGGGCTCGCGGC
GACACGAGTCACTGGCTTTCGGATCAGAAGGTTTGTTCGTGTATGCGTTG
CTCGACGACTTTCACTGTCGTCTTTCGCAAACACCACTGTAGAGCATGCG
GCGCAGTGATTTGTCAATCTTGCTCTCATTTCATAGAGCCTGAGTTTATC
TTTGAAGATAGCAGCAAGACCACCTCCAGCAACCCTGTTGTCACCCTTGC
CTCCTTGCGGGCTGTGGCTGCACCCCCGTCGGCCACTGTTCGTGTATGTG
GACCTTGCGCGGTGTCGACTCATAAGGTAGTCGTCGCTCAAGATGTGCCC
TTCGATGTTGGCAAGGTGGAGGTAGCGATCGATCAAACGCCAGCATATGT
CTACGCGTTGTATCACAAAACTGAAGAGCTCTTTGTCGGTAGTCTTTCCG
CAGTCTGTGTTCAAGCCCGGGGCCTGCCCGCAGCAGATGTTAATAGGCTC
GCGGATCCCTACGTAAATTTTACCCTGACAGGGTACACGCTGTCAGGAGG
ACTGGAGTGGCCCGAGGCCATGCGTGAGACATACAAGACAGGCACGAGAT
ACGCAACCTTGAACCCTATTTGGGGCGGGGCAGAACATTTTCATTGGAGG
GTGCCAAGGGCAGAAGCGGTGTTGAGGGTGGAAATACTTGATTGGGATAT
AGGTATGAGTCATGATGTGTTAAGTGCAGTCGAGATTCCGCTTGCGGGAT
TGTTGCATCAGCGAAGGGTGGATGTGTGGGTGCCTTTGGTGTCGTTCGAG
GATGGGGATGGCGGGGGGGAGGTACGCTTGATCATACAGTATAAATTTAA
TAGGGCAGGGGAGGCGTTATCAAGGTTTTGGGCGGAACCGGTGTGTCCAA
GGGAGGTGGTGGGATTTAGTCCCAAGAGAACATATAAGCATGTAATGGAT
TTGATGGAGGAATTGATGCCTTACACGGCTTTGCTTGCCCAGGTTGGGAT
GGTCTTGAAGTGGGAGAAGCCAGTGATGACCTTGAGTGTGTTTGGGGTAC
TTGTGGCGCTCACGATGAATCCAAAGTATGCGTTTTCGTTCATCCAGTTT
GCTATGGTTGTGTACCTTGGGTTTATGTATGTGTGTCGGAAGGGCAGGCA
GCATGCAAGGGATGTGGAGGAGGCGAAGAAAAACAAATTGACGTTGAGGG
AATTTTTGGCGCGACGGCGGCAAACGGGCAAGGGGGTGGTAGGAAGATTG
GCAACTCTGAGGTCGGGTGTGAGGAGAAGGAGGAGTAGTAGTGGTGCTGT
TGGAAAGGGGAGGGAGATGGAGAGGGAGGAGAGAGGGATTGATGGTAGTA
GTGGCACTAGCACCAGCAGTGGCGGGGGGTTGGCCATGACGGAGGAGCAG
AAGAAGCAGCAAGAAGAGGAGCAGCAGGGGATTGTATCTCTGGGTCTTGT
CGTGAATTTTCTCGGGAGTCGTATCGGGCGAAACGAGGCGACGACGAATC
TGCAGAACGCATTGGGGATGCTCGTCCTCCTTCTACAATCGATCCGCCAG
CTTTTAGAGTGGGACTCACCCGTGATAACATCCGCTTTTATGGTACTTTT
GATAGGGAGTGCCATTGTGCATTTATTCGTGAGTGTGACATGGTTGTTCT
TGCTGGGGGAAGCGGTGATTTTCCAGTTGTTTACTTGGCCTTTGCAGGTG
GGGGCGTGGTGGGTAGTGCGGGTTGGGAAGGCCCTGTCGTCCCTTCTGAC
GCAAGCAATGTACTCGTTGATGCGTCAAGGGAAGGTGCCTGGGGAGGTAG
TGCTCGGGAAGGAGGAGAAAAAAGTGTAAGAGTAGATGAAAGGAGATTGA
GGAGGGGGGTGACGGATGGAAATGTGGTTGGTGTTGTGATGTGGTGGGTG
TGCCTTCACGAATGAATTTAGAGACGAGGGG

Coding sequence (CDS) from alignment at scaffold_7:931999..934379+

>mRNA_3216 ID=mRNA_3216|Name=jgi.p|Nanoce1779_2|400883|organism=Nannochloropsis oceanica|type=CDS|length=1959bp|location=Sequence derived from alignment at scaffold_7:931999..934379+ (Nannochloropsis oceanica)
ATGCGTGTCAATCGTCTTTCTGGCAGTCGCATTGCTGAAGCAATTTGTCC
CCTTTCTCAAGCCCCTTCATTCGCCACTTTCTTCTCATGCCCCATACCGC
TCTCTACACCAGACGCTCCTCCAGCTTCCAAACTGGGGCCTATAGCAAAA
AGGCTGGTGCAACGCCGGCGGGCTCGCGGCGACACGAGTCACTGGCTTTC
GGATCAGAAGGTTTGTTCGTGTATGCGTTGCTCGACGACTTTCACTGTCG
TCTTTCGCAAACACCACTGTAGAGCATGCGGCGCAGTGATTTGTCAATCT
TGCTCTCATTTCATAGAGCCTGAGTTTATCTTTGAAGATAGCAGCAAGAC
CACCTCCAGCAACCCTGTTGTCACCCTTGCCTCCTTGCGGGCTGTGGCTG
CACCCCCGTCGGCCACTGTTCGTGTATGTGGACCTTGCGCGGTGTCGACT
CATAAGGTAGTCGTCGCTCAAGATGTGCCCTTCGATGTTGGCAAGGTGGA
GGTAGCGATCGATCAAACGCCAGCATATGTCTACGCGTTGTATCACAAAA
CTGAAGAGCTCTTTGTCGGTAGTCTTTCCGCAGTCTGTGTTCAAGCCCGG
GGCCTGCCCGCAGCAGATGTTAATAGGCTCGCGGATCCCTACGTAAATTT
TACCCTGACAGGGTACACGCTGTCAGGAGGACTGGAGTGGCCCGAGGCCA
TGCGTGAGACATACAAGACAGGCACGAGATACGCAACCTTGAACCCTATT
TGGGGCGGGGCAGAACATTTTCATTGGAGGGTGCCAAGGGCAGAAGCGGT
GTTGAGGGTGGAAATACTTGATTGGGATATAGGTATGAGTCATGATGTGT
TAAGTGCAGTCGAGATTCCGCTTGCGGGATTGTTGCATCAGCGAAGGGTG
GATGTGTGGGTGCCTTTGGTGTCGTTCGAGGATGGGGATGGCGGGGGGGA
GGTACGCTTGATCATACAGTATAAATTTAATAGGGCAGGGGAGGCGTTAT
CAAGGTTTTGGGCGGAACCGGTGTGTCCAAGGGAGGTGGTGGGATTTAGT
CCCAAGAGAACATATAAGCATGTAATGGATTTGATGGAGGAATTGATGCC
TTACACGGCTTTGCTTGCCCAGGTTGGGATGGTCTTGAAGTGGGAGAAGC
CAGTGATGACCTTGAGTGTGTTTGGGGTACTTGTGGCGCTCACGATGAAT
CCAAAGTATGCGTTTTCGTTCATCCAGTTTGCTATGGTTGTGTACCTTGG
GTTTATGTATGTGTGTCGGAAGGGCAGGCAGCATGCAAGGGATGTGGAGG
AGGCGAAGAAAAACAAATTGACGTTGAGGGAATTTTTGGCGCGACGGCGG
CAAACGGGCAAGGGGGTGGTAGGAAGATTGGCAACTCTGAGGTCGGGTGT
GAGGAGAAGGAGGAGTAGTAGTGGTGCTGTTGGAAAGGGGAGGGAGATGG
AGAGGGAGGAGAGAGGGATTGATGGTAGTAGTGGCACTAGCACCAGCAGT
GGCGGGGGGTTGGCCATGACGGAGGAGCAGAAGAAGCAGCAAGAAGAGGA
GCAGCAGGGGATTGTATCTCTGGGTCTTGTCGTGAATTTTCTCGGGAGTC
GTATCGGGCGAAACGAGGCGACGACGAATCTGCAGAACGCATTGGGGATG
CTCGTCCTCCTTCTACAATCGATCCGCCAGCTTTTAGAGTGGGACTCACC
CGTGATAACATCCGCTTTTATGGTACTTTTGATAGGGAGTGCCATTGTGC
ATTTATTCGTGAGTGTGACATGGTTGTTCTTGCTGGGGGAAGCGGTGATT
TTCCAGTTGTTTACTTGGCCTTTGCAGGTGGGGGCGTGGTGGGTAGTGCG
GGTTGGGAAGGCCCTGTCGTCCCTTCTGACGCAAGCAATGTACTCGTTGA
TGCGTCAAGGGAAGGTGCCTGGGGAGGTAGTGCTCGGGAAGGAGGAGAAA
AAAGTGTAA

Synonyms

Publications