jgi.p|Nanoce1779_2|584952, mRNA_3215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584952
Unique NamemRNA_3215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length979
Alignment locationscaffold_7:930982..931960 -

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Properties
Property NameValue
TranscriptId585038
TrackFilteredModels2
ProteinId584952
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:930982..931960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584952gene_3215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584952mRNA_3215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3215CDS_3215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3215 ID=mRNA_3215|Name=jgi.p|Nanoce1779_2|584952|organism=Nannochloropsis oceanica|type=mRNA|length=979bp
ACAGGCAAAAGCACTTCACAACAATGCGGCAGCTAGCTCCAGTGCTCTCA
TTCGTCATCAGCCTTGCCCTCCTTCCTGATGTCATGTGCATGGTGCTCCC
TGTGCGGAGCAAGCCTCCCTCTGCGCCGCCCCCACCGCGGGTGGACAATG
CCATCGAACGTTTCTTCATTCGAGCTATGGCTAGAAAACTAGCTACCATT
ACGCCTGACCAGGCTCCCTTCAAGCCAAACCCCACATTCGACGAAATGGC
GCTTTCCACTATGCAACTCCTAGACCCGGCATCCGATCCTCTGATACAGT
CGGCCAAGATTGCCAGATTGCTCGAGGAAGTGACCCCACCTTTCCTCCGT
TTCCTCTTTCGTACATTCGGAGGTTCTCGATTTGGATGTGAGGCCAATGC
GTTGGTGGCGCCGCTCTTTTCGCAGTGGTTGGTGGGACCATCAAAGCGGG
TTGAGGGCCCTGTGAAGGGGGATACCTGGCAATCGACCATGCTGATTGAA
GAGTGTCGCTACCTCAAGTCGGTGGACGGCTGTCGGCACGCGTGCGTGTA
CCTATGCAAGGTCCCAACGCAGACATTTTTCAAGGAATCTTTAAATATGG
ATGTGACCATGACGCCTGATTTTAATGATAACAGTTGCCGTATGTGTTTC
GGACAAGCGCCACCGGCATCCTTGGACGACGACCCGGTTATGCTTGCGAC
GGATGGGGTGCCTTGTTTGGCGACGGTGTCGTGTTGTGGTGCGACGGTGG
GGAAGACAAAAAAGAAAAGCAGGAGTAAGGAAGCGTCGACCGAGAAGGAG
GAGCTGATTTGCAAGTAAGACTGTAGAGGAAAGGTATTTTTAGAAGGTCT
AGTATGGACTGAGTTTGTAGATGATACAATGTGCCTGGGCACTTGATTAA
AAAAGAAGAAGATATAAAAGAGGTTTATCTTCATCAGAGACTCGGGTAAA
AGTCACGTGACCTCGCGATCAATGAATTT
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protein sequence of jgi.p|Nanoce1779_2|584952

>mRNA_3215-protein ID=mRNA_3215-protein|Name=jgi.p|Nanoce1779_2|584952|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MRQLAPVLSFVISLALLPDVMCMVLPVRSKPPSAPPPPRVDNAIERFFIR
AMARKLATITPDQAPFKPNPTFDEMALSTMQLLDPASDPLIQSAKIARLL
EEVTPPFLRFLFRTFGGSRFGCEANALVAPLFSQWLVGPSKRVEGPVKGD
TWQSTMLIEECRYLKSVDGCRHACVYLCKVPTQTFFKESLNMDVTMTPDF
NDNSCRMCFGQAPPASLDDDPVMLATDGVPCLATVSCCGATVGKTKKKSR
SKEASTEKEELICK*
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mRNA from alignment at scaffold_7:930982..931960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3215 ID=mRNA_3215|Name=jgi.p|Nanoce1779_2|584952|organism=Nannochloropsis oceanica|type=mRNA|length=979bp|location=Sequence derived from alignment at scaffold_7:930982..931960- (Nannochloropsis oceanica)
ACAGGCAAAAGCACTTCACAACAATGCGGCAGCTAGCTCCAGTGCTCTCA
TTCGTCATCAGCCTTGCCCTCCTTCCTGATGTCATGTGCATGGTGCTCCC
TGTGCGGAGCAAGCCTCCCTCTGCGCCGCCCCCACCGCGGGTGGACAATG
CCATCGAACGTTTCTTCATTCGAGCTATGGCTAGAAAACTAGCTACCATT
ACGCCTGACCAGGCTCCCTTCAAGCCAAACCCCACATTCGACGAAATGGC
GCTTTCCACTATGCAACTCCTAGACCCGGCATCCGATCCTCTGATACAGT
CGGCCAAGATTGCCAGATTGCTCGAGGAAGTGACCCCACCTTTCCTCCGT
TTCCTCTTTCGTACATTCGGAGGTTCTCGATTTGGATGTGAGGCCAATGC
GTTGGTGGCGCCGCTCTTTTCGCAGTGGTTGGTGGGACCATCAAAGCGGG
TTGAGGGCCCTGTGAAGGGGGATACCTGGCAATCGACCATGCTGATTGAA
GAGTGTCGCTACCTCAAGTCGGTGGACGGCTGTCGGCACGCGTGCGTGTA
CCTATGCAAGGTCCCAACGCAGACATTTTTCAAGGAATCTTTAAATATGG
ATGTGACCATGACGCCTGATTTTAATGATAACAGTTGCCGTATGTGTTTC
GGACAAGCGCCACCGGCATCCTTGGACGACGACCCGGTTATGCTTGCGAC
GGATGGGGTGCCTTGTTTGGCGACGGTGTCGTGTTGTGGTGCGACGGTGG
GGAAGACAAAAAAGAAAAGCAGGAGTAAGGAAGCGTCGACCGAGAAGGAG
GAGCTGATTTGCAAGTAAGACTGTAGAGGAAAGGTATTTTTAGAAGGTCT
AGTATGGACTGAGTTTGTAGATGATACAATGTGCCTGGGCACTTGATTAA
AAAAGAAGAAGATATAAAAGAGGTTTATCTTCATCAGAGACTCGGGTAAA
AGTCACGTGACCTCGCGATCAATGAATTT
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Coding sequence (CDS) from alignment at scaffold_7:930982..931960-

>mRNA_3215 ID=mRNA_3215|Name=jgi.p|Nanoce1779_2|584952|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_7:930982..931960- (Nannochloropsis oceanica)
ATGCGGCAGCTAGCTCCAGTGCTCTCATTCGTCATCAGCCTTGCCCTCCT
TCCTGATGTCATGTGCATGGTGCTCCCTGTGCGGAGCAAGCCTCCCTCTG
CGCCGCCCCCACCGCGGGTGGACAATGCCATCGAACGTTTCTTCATTCGA
GCTATGGCTAGAAAACTAGCTACCATTACGCCTGACCAGGCTCCCTTCAA
GCCAAACCCCACATTCGACGAAATGGCGCTTTCCACTATGCAACTCCTAG
ACCCGGCATCCGATCCTCTGATACAGTCGGCCAAGATTGCCAGATTGCTC
GAGGAAGTGACCCCACCTTTCCTCCGTTTCCTCTTTCGTACATTCGGAGG
TTCTCGATTTGGATGTGAGGCCAATGCGTTGGTGGCGCCGCTCTTTTCGC
AGTGGTTGGTGGGACCATCAAAGCGGGTTGAGGGCCCTGTGAAGGGGGAT
ACCTGGCAATCGACCATGCTGATTGAAGAGTGTCGCTACCTCAAGTCGGT
GGACGGCTGTCGGCACGCGTGCGTGTACCTATGCAAGGTCCCAACGCAGA
CATTTTTCAAGGAATCTTTAAATATGGATGTGACCATGACGCCTGATTTT
AATGATAACAGTTGCCGTATGTGTTTCGGACAAGCGCCACCGGCATCCTT
GGACGACGACCCGGTTATGCTTGCGACGGATGGGGTGCCTTGTTTGGCGA
CGGTGTCGTGTTGTGGTGCGACGGTGGGGAAGACAAAAAAGAAAAGCAGG
AGTAAGGAAGCGTCGACCGAGAAGGAGGAGCTGATTTGCAAGTAA
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Synonyms
Publications