jgi.p|Nanoce1779_2|400905, mRNA_3214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|400905
Unique NamemRNA_3214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1294
Alignment locationscaffold_7:929693..930986 -

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Properties
Property NameValue
TranscriptId400991
TrackFilteredModels2
ProteinId400905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:929693..930986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|400905gene_3214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|400905mRNA_3214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3214CDS_3214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3214 ID=mRNA_3214|Name=jgi.p|Nanoce1779_2|400905|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
AATTTCATCTTTTTCATTATCGTCTCTCACGCATTTCGTTTTTTTTTTTA
ATTTCCTTTCCATTTCTCTCCTCTAATTTGTCTAGTTAATGGTCGATTTG
GAACCCCTAATTGATGGCTAAAAGCGATTCCTGTACGCATGTAGGCACAC
AAATACACACACACACATGCACATGCACACACTGAATGTAAACCTCTTTA
ATTTTCACTTCTTCAACTAGTTTTTTTCATAGTCGTCGTCGTCATCATCA
CTGTCGTCGTTGCTTTTGATGTGACATATTTTCAAAGCCAGAGAACCAAT
TCCTACTTCCTATATGTATATTTCTGTGTGTATGTGTGTGCATCCGAGTT
CCCATGCTTCGATTTTGGAAAGCGCCTAAAGGTAGATATGGGAGTTGCCC
CCTCCTTTCCTATGTCTCTCGGCTGATGAGTGAGATGGGGGAAATGGCTT
CAACGAACACCCCCTTGATATGCATAGATTCGTTGCCTTAGGTATTTCCT
TTCGGTGCCCACTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGCCCCTC
TGTCTCTGTCCCTCTGTGTCTGTCTCTATGTCCCTCTGTGTCTGTCTCTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTC
TCTCTCTGTGTGTCTGTCTCTGTCTCCCTGTGTCTCTGTATGTGCATCTC
TATCTGTCTTCGTGTCTGTCAGTGTCATTCTGGCTCTGTCTCCCTTTGTC
TCTGTCTCTATCTCTGTCTCTATTCTACAAGAGCTTCTTCTCTCACGAGA
GCTTCTTCTTGCCTCTGCTTCGACCATACCATCTATCATCACACCATCTA
CGCACTCAACTGCGACATCTGACTATTCGCCATGGGCGAATATGCAGGGA
CAAAGCGGACACCTCCATTATTCCTTCCGATGGCCATCGACGTCCTTGTC
TTCCCTTCCTCCTCTTCTCTTTCTTCCTTTTCTTCTTCTTCCTCCTCCCC
ATCCTCCCCCTCCTCGTCCTCGTCGTCCTCGTCTTCCTCGCTCTCTCTTC
TACCCGTCAGATCGAACACCCTCCGACTGCTTGCTCCCTGCAGATGCATT
TGAAACAACGCCGTCCCCAATGCCTCCTCCCCCGTTGCCAGCAGGCTCAT
CCTCCCCCCTCCCCTCCCTCCCATCACCGGCGAGTCGATCAAATTCCCAG
CATCGCCACACAATCGCGGGGTGTTATCGATGCGGCACAAAGACTCTAAA
AGTTGAAGCTGTGCTCTTTGTAAAGCCTTCGGATCCATGTCCGA
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protein sequence of jgi.p|Nanoce1779_2|400905

>mRNA_3214-protein ID=mRNA_3214-protein|Name=jgi.p|Nanoce1779_2|400905|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MHRFVALGISFRCPLSVSLSLSLSLPLCLCPSVSVSMSLCVCLSVSLSLS
LSLSLSLSRSLSLCVCLCLPVSLYVHLYLSSCLSVSFWLCLPLSLSLSLS
LFYKSFFSHESFFLPLLRPYHLSSHHLRTQLRHLTIRHGRICRDKADTSI
IPSDGHRRPCLPFLLFSFFLFFFFLLPILPLLVLVVLVFLALSSTRQIEH
PPTACSLQMHLKQRRPQCLLPRCQQAHPPPSPPSHHRRVDQIPSIATQSR
GVIDAAQRL*
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mRNA from alignment at scaffold_7:929693..930986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3214 ID=mRNA_3214|Name=jgi.p|Nanoce1779_2|400905|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at scaffold_7:929693..930986- (Nannochloropsis oceanica)
AATTTCATCTTTTTCATTATCGTCTCTCACGCATTTCGTTTTTTTTTTTA
ATTTCCTTTCCATTTCTCTCCTCTAATTTGTCTAGTTAATGGTCGATTTG
GAACCCCTAATTGATGGCTAAAAGCGATTCCTGTACGCATGTAGGCACAC
AAATACACACACACACATGCACATGCACACACTGAATGTAAACCTCTTTA
ATTTTCACTTCTTCAACTAGTTTTTTTCATAGTCGTCGTCGTCATCATCA
CTGTCGTCGTTGCTTTTGATGTGACATATTTTCAAAGCCAGAGAACCAAT
TCCTACTTCCTATATGTATATTTCTGTGTGTATGTGTGTGCATCCGAGTT
CCCATGCTTCGATTTTGGAAAGCGCCTAAAGGTAGATATGGGAGTTGCCC
CCTCCTTTCCTATGTCTCTCGGCTGATGAGTGAGATGGGGGAAATGGCTT
CAACGAACACCCCCTTGATATGCATAGATTCGTTGCCTTAGGTATTTCCT
TTCGGTGCCCACTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGCCCCTC
TGTCTCTGTCCCTCTGTGTCTGTCTCTATGTCCCTCTGTGTCTGTCTCTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCTC
TCTCTCTGTGTGTCTGTCTCTGTCTCCCTGTGTCTCTGTATGTGCATCTC
TATCTGTCTTCGTGTCTGTCAGTGTCATTCTGGCTCTGTCTCCCTTTGTC
TCTGTCTCTATCTCTGTCTCTATTCTACAAGAGCTTCTTCTCTCACGAGA
GCTTCTTCTTGCCTCTGCTTCGACCATACCATCTATCATCACACCATCTA
CGCACTCAACTGCGACATCTGACTATTCGCCATGGGCGAATATGCAGGGA
CAAAGCGGACACCTCCATTATTCCTTCCGATGGCCATCGACGTCCTTGTC
TTCCCTTCCTCCTCTTCTCTTTCTTCCTTTTCTTCTTCTTCCTCCTCCCC
ATCCTCCCCCTCCTCGTCCTCGTCGTCCTCGTCTTCCTCGCTCTCTCTTC
TACCCGTCAGATCGAACACCCTCCGACTGCTTGCTCCCTGCAGATGCATT
TGAAACAACGCCGTCCCCAATGCCTCCTCCCCCGTTGCCAGCAGGCTCAT
CCTCCCCCCTCCCCTCCCTCCCATCACCGGCGAGTCGATCAAATTCCCAG
CATCGCCACACAATCGCGGGGTGTTATCGATGCGGCACAAAGACTCTAAA
AGTTGAAGCTGTGCTCTTTGTAAAGCCTTCGGATCCATGTCCGA
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Coding sequence (CDS) from alignment at scaffold_7:929693..930986-

>mRNA_3214 ID=mRNA_3214|Name=jgi.p|Nanoce1779_2|400905|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_7:929693..930986- (Nannochloropsis oceanica)
ATGCATAGATTCGTTGCCTTAGGTATTTCCTTTCGGTGCCCACTCTCTGT
CTCTCTGTCTCTGTCTCTGTCTCTGCCCCTCTGTCTCTGTCCCTCTGTGT
CTGTCTCTATGTCCCTCTGTGTCTGTCTCTCTGTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTGTGTGTCTGTCT
CTGTCTCCCTGTGTCTCTGTATGTGCATCTCTATCTGTCTTCGTGTCTGT
CAGTGTCATTCTGGCTCTGTCTCCCTTTGTCTCTGTCTCTATCTCTGTCT
CTATTCTACAAGAGCTTCTTCTCTCACGAGAGCTTCTTCTTGCCTCTGCT
TCGACCATACCATCTATCATCACACCATCTACGCACTCAACTGCGACATC
TGACTATTCGCCATGGGCGAATATGCAGGGACAAAGCGGACACCTCCATT
ATTCCTTCCGATGGCCATCGACGTCCTTGTCTTCCCTTCCTCCTCTTCTC
TTTCTTCCTTTTCTTCTTCTTCCTCCTCCCCATCCTCCCCCTCCTCGTCC
TCGTCGTCCTCGTCTTCCTCGCTCTCTCTTCTACCCGTCAGATCGAACAC
CCTCCGACTGCTTGCTCCCTGCAGATGCATTTGAAACAACGCCGTCCCCA
ATGCCTCCTCCCCCGTTGCCAGCAGGCTCATCCTCCCCCCTCCCCTCCCT
CCCATCACCGGCGAGTCGATCAAATTCCCAGCATCGCCACACAATCGCGG
GGTGTTATCGATGCGGCACAAAGACTCTAA
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Synonyms
Publications