jgi.p|Nanoce1779_2|526434, mRNA_3213 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|526434
Unique Name	mRNA_3213
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1131
Alignment location	scaffold_7:928098..929495 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	526520
Track	FilteredModels2
ProteinId	526434

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:928098..929495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526434	gene_3213	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526434	mRNA_3213-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3213	CDS_3213	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:928098..929495+
coding sequence from alignment at scaffold_7:928098..929495+

mRNA sequence

>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Nanoce1779_2|526434|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGACTCCCGAAATCCGAGATATTGCTCGTGAATACGAAAAGATGACTGG
GGAAGCCCTCCCGCGCATTTCAATCGACGATCGTCGCGCTCAGCAACTCC
TCGTCTCGTGTGTCGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCTT
TTTTCGAGACACACAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGCG
GACAACAGACTATCGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCTG
TGGGGTTGATCGTGTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGCG
GCTGATCTATTCTACCTCCGAGAGGACGTGGGCGAGCTGCGTAACGATCT
TTTCGCACAGCAAGAGGCCGCCACCGCCGCCGAAGAAGGGCTAGCCGCCG
CTGCTGGTGGACTGACTCCGGGCCGCTCCCCCCGGGTCATTCAATGCTAC
ATGTGCTTCGATGATGAAGACACTGTAGAAAATCCTCTGGTCGCGCCCTG
CCTCTGCAAAGGCGGGACTCGCTATGTCCACCTTACCTGCCTCCAAAAGT
GGCAAGCATCTGCAGGGGACGACAAGGACTGTGTCGTCGCCACCAGCGCC
GAATTAAAAAACACCTGCAAAATCTGCAAATCCAAGTACAAGACACACGT
TCGTGCCAAGGACGGGCGGCTTCTTCCCCTTTTGGGACACCAGCTCCCTC
CTCCCTTCATTTGTTTCTTGGTCGTGACGAAGCACGACACGGCGGAGGAA
CTGTTCAACACCCAGTTCCAATTATCGTTTGCGGAGAACAAGCAGATTTT
GATTGGCCGGTCGAGGACTTGTCAGATGGTGTTGGATTACCGGACGGTGT
CCACTCAGCACGCTACTGTGACTTTTCGCAAGGGAGGCTTTTACTTCAGG
GATCTAAGCAGTAGTAACGGCTCGATGCTCAACTTGAGGAGGCCAATGAA
ATTGCCTTACAATCAATGGGTTCGAATCAGGTATGGACGATCGATCGTGG
CATTCAAAGCAAAAAGGAGCTGGATTAGGAGGAGGCTCTCGGCGATGCCC
CCTGCTGGTACTGCTGCTGGAGGAGAAGGAGGGGGAGGGGGGGGAGGGGG
GGGGGGGGAAGTGGCCGTTTGGCGGCGATAG

protein sequence of jgi.p|Nanoce1779_2|526434

>mRNA_3213-protein ID=mRNA_3213-protein|Name=jgi.p|Nanoce1779_2|526434|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MTPEIRDIAREYEKMTGEALPRISIDDRRAQQLLVSCVGEDYYVAPAPEL
FSRHTGTCRVLGDKHQRTTDYRLQVGDFLRIGSVGLIVSELHPGKELGRA
ADLFYLREDVGELRNDLFAQQEAATAAEEGLAAAAGGLTPGRSPRVIQCY
MCFDDEDTVENPLVAPCLCKGGTRYVHLTCLQKWQASAGDDKDCVVATSA
ELKNTCKICKSKYKTHVRAKDGRLLPLLGHQLPPPFICFLVVTKHDTAEE
LFNTQFQLSFAENKQILIGRSRTCQMVLDYRTVSTQHATVTFRKGGFYFR
DLSSSNGSMLNLRRPMKLPYNQWVRIRYGRSIVAFKAKRSWIRRRLSAMP
PAGTAAGGEGGGGGGGGGGEVAVWRR*

mRNA from alignment at scaffold_7:928098..929495+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Nanoce1779_2|526434|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at scaffold_7:928098..929495+ (Nannochloropsis oceanica)
ATGACTCCCGAAATCCGAGATATTGCTCGTGAATACGAAAAGATGACTGG
GGAAGCCCTCCCGCGCATTTCAATCGACGATCGTCGCGCTCAGCAACTCC
TCGTCTCGTGTGTCGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCTT
TTTTCGAGACACACAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGCG
GACAACAGACTATCGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCTG
TGGGGTTGATCGTGTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGCG
GCTGGTGGTGATAGCAGCGACAGCGGCAGCAGCAGCGGCAACTGTAGAAC
TAATAATGGTACTAGAATGATGCAGGAAAGTAGCATGGGTACAAGTCACG
CTGCGAGCAACAGACGGGGCAACGCTAGCGGCAGCAGCGGGGACACTACC
CAGGAAGGCGACTTGGGAGCCACCAACGGAGGAAGGCGGCCACGCAACCC
TTACCCCAACAACCACAGCAACACTTCCACGACCAACTACCACTCCGTCC
CATTGGCAATTACGGAAAAAGATCTATTCTACCTCCGAGAGGACGTGGGC
GAGCTGCGTAACGATCTTTTCGCACAGCAAGAGGCCGCCACCGCCGCCGA
AGAAGGGCTAGCCGCCGCTGCTGGTGGACTGACTCCGGGCCGCTCCCCCC
GGGTCATTCAATGCTACATGTGCTTCGATGATGAAGACACTGTAGAAAAT
CCTCTGGTCGCGCCCTGCCTCTGCAAAGGCGGGACTCGCTATGTCCACCT
TACCTGCCTCCAAAAGTGGCAAGCATCTGCAGGGGACGACAAGGACTGTG
TCGTCGCCACCAGCGCCGAATTAAAAAACACCTGCAAAATCTGCAAATCC
AAGTACAAGACACACGTTCGTGCCAAGGACGGGCGGCTTCTTCCCCTTTT
GGGACACCAGCTCCCTCCTCCCTTCATTTGTTTCTTGGTCGTGACGAAGC
ACGACACGGCGGAGGAACTGTTCAACACCCAGTTCCAATTATCGTTTGCG
GAGAACAAGCAGATTTTGATTGGCCGGTCGAGGACTTGTCAGATGGTGTT
GGATTACCGGACGGTGTCCACTCAGCACGCTACTGTGACTTTTCGCAAGG
GAGGCTTTTACTTCAGGGATCTAAGCAGTAGTAACGGCTCGATGCTCAAC
TTGAGGAGGCCAATGAAATTGCCTTACAATCAATGGGTTCGAATCAGGTA
TGGACGATCGATCGTGGCATTCAAAGCAAAAAGGAGCTGGATTAGGAGGA
GGCTCTCGGCGATGCCCCCTGCTGGTACTGCTGCTGGAGGAGAAGGAGGG
GGAGGGGGGGGAGGGGGGGGGGGGGAAGTGGCCGTTTGGCGGCGATAG

Coding sequence (CDS) from alignment at scaffold_7:928098..929495+

>mRNA_3213 ID=mRNA_3213|Name=jgi.p|Nanoce1779_2|526434|organism=Nannochloropsis oceanica|type=CDS|length=2262bp|location=Sequence derived from alignment at scaffold_7:928098..929495+ (Nannochloropsis oceanica)
ATGACTCCCGAAATCCGAGATATTGCTCGTGAATACGAAAAGATGACTGG
GGAAGCCCTCCCGCGCATTTCAATCGACGATCGTCGCGCTCAGCAACTCC
TCGTCTCGTGTGTCGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCTT
TTTTCGAGACACACAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGCG
GACAACAGACTATCGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCTG
TGGGGTTGATCGTGTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGCG
GCTGATCTATTCTACCTCCGAGAGGACGTGGGCGAGCTGCGTAACGATCT
TTTCGCACAGCAAGAGGCCGCCACCGCCGCCGAAGAAGGGCTAGCCGCCG
CTGCTGGTGGACTGACTCCGGGCCGCTCCCCCCGGGTCATTCAATGCTAC
ATGTGCTTCGATGATGAAGACACTGTAGAAAATCCTCTGGTCGCGCCCTG
CCTCTGCAAAGGCGGGACTCGCTATGTCCACCTTACCTGCCTCCAAAAGT
GGCAAGCATCTGCAGGGGACGACAAGGACTGTGTCGTCGCCACCAGCGCC
GAATTAAAAAACACCTGCAAAATCTGCAAATCCAAGTACAAGACACACGT
TCGTGCCAAGGACGGGCGGCTTCTTCCCCTTTTGGGACACCAGCTCCCTC
CTCCCTTCATTTGTTTCTTGGTCGTGACGAAGCACGACACGGCGGAGGAA
CTGTTCAACACCCAGTTCCAATTATCGTTTGCGGAGAACAAGCAGATTTT
GATTGGCCGGTCGAGGACTTGTCAGATGGTGTTGGATTACCGGACGGTGT
CCACTCAGCACGCTACTGTGACTTTTCGCAAGGGAGGCTTTTACTTCAGG
GATCTAAGCAGTAGTAACGGCTCGATGCTCAACTTGAGGAGGCCAATGAA
ATTGCCTTACAATCAATGGGTTCGAATCAGGTATGGACGATCGATCGTGG
CATTCAAAGCAAAAAGGAGCTGGATTAGGAGGAGGCTCTCGGCGATGCCC
CCTGCTGGTACTGCTGCTGGAGGAGAAGGAGGGGGAGGGGGGGGAGGGGG
GGGGGGGGAAGTGGCCGTTTGGCGGCGATAGATGACTCCCGAAATCCGAG
ATATTGCTCGTGAATACGAAAAGATGACTGGGGAAGCCCTCCCGCGCATT
TCAATCGACGATCGTCGCGCTCAGCAACTCCTCGTCTCGTGTGTCGGCGA
AGACTACTACGTAGCGCCTGCACCAGAGCTTTTTTCGAGACACACAGGCA
CGTGTCGTGTCCTTGGCGATAAGCATCAGCGGACAACAGACTATCGGTTA
CAGGTGGGGGATTTCCTTCGCATTGGCTCTGTGGGGTTGATCGTGTCCGA
GCTGCACCCGGGGAAGGAATTGGGGCGTGCGGCTGATCTATTCTACCTCC
GAGAGGACGTGGGCGAGCTGCGTAACGATCTTTTCGCACAGCAAGAGGCC
GCCACCGCCGCCGAAGAAGGGCTAGCCGCCGCTGCTGGTGGACTGACTCC
GGGCCGCTCCCCCCGGGTCATTCAATGCTACATGTGCTTCGATGATGAAG
ACACTGTAGAAAATCCTCTGGTCGCGCCCTGCCTCTGCAAAGGCGGGACT
CGCTATGTCCACCTTACCTGCCTCCAAAAGTGGCAAGCATCTGCAGGGGA
CGACAAGGACTGTGTCGTCGCCACCAGCGCCGAATTAAAAAACACCTGCA
AAATCTGCAAATCCAAGTACAAGACACACGTTCGTGCCAAGGACGGGCGG
CTTCTTCCCCTTTTGGGACACCAGCTCCCTCCTCCCTTCATTTGTTTCTT
GGTCGTGACGAAGCACGACACGGCGGAGGAACTGTTCAACACCCAGTTCC
AATTATCGTTTGCGGAGAACAAGCAGATTTTGATTGGCCGGTCGAGGACT
TGTCAGATGGTGTTGGATTACCGGACGGTGTCCACTCAGCACGCTACTGT
GACTTTTCGCAAGGGAGGCTTTTACTTCAGGGATCTAAGCAGTAGTAACG
GCTCGATGCTCAACTTGAGGAGGCCAATGAAATTGCCTTACAATCAATGG
GTTCGAATCAGGTATGGACGATCGATCGTGGCATTCAAAGCAAAAAGGAG
CTGGATTAGGAGGAGGCTCTCGGCGATGCCCCCTGCTGGTACTGCTGCTG
GAGGAGAAGGAGGGGGAGGGGGGGGAGGGGGGGGGGGGGAAGTGGCCGTT
TGGCGGCGATAG

Synonyms

Publications