jgi.p|Nanoce1779_2|584942, mRNA_3211 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584942
Unique NamemRNA_3211
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1357
Alignment locationscaffold_7:925678..927034 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585028
TrackFilteredModels2
ProteinId584942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:925678..927034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584942gene_3211Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584942mRNA_3211-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3211CDS_3211Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3211 ID=mRNA_3211|Name=jgi.p|Nanoce1779_2|584942|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp
AAACCACAATTCGAACCCACAACCATCACAAACACACACAGGACCACAGA
GAGGGAGAGATGAGTGTGCTTCTCATTTCTTGCCACCTACCCCGTACTCC
GCTTGCTTTATCTGTCACTTGAAACTGTCCAGACCACTATTTGACCCGAC
ACCCATCATCATCATTACTCACACTCGACCTATCCCCCAAACCCTAACGC
AGGGCCAGTAAGTCATGGACGTCTTCAAGCGAGCCTTGGACTTCAACGTC
AAGGGCACGGAAACCGTGCAAGTGCGGACGGCGGTGGGCGGCCTGGTAAC
CATGGCGAGCGCATGTCTGTGCTTCCTGCTCCTCGTCTCGGAATTGGTGG
CCTACTCGCGGGTCGAGGTCGTAAATCACATGACCGTCGACTCCACCCCG
CCTTCCCTGGAGACGGCTGTGCCGATAAACTTCCACATTACCTTTCCCTT
GGTTCCATGCAAAGATATTAGCTTCGATGCGGAGTCCACACGGGGCGAAG
CCGTCGTGCATCTTGCAGCCCAGGACGTTCGCAAGACCCCTGCGACGGAC
CGCGAATCGAGCTTGAAAGCCCCTCAAGGCCAAACAGGCTGCACCGTGGA
AGGTACCCTGTTTACGGGCAAGGTTGCGGGGGAATTTCGGATTAATTTGG
GAGAAGACGTGCCTTTGCATTTGGCACCTATGGTGGCAGTGGATAGCAAG
ACGAATTACACAGCCCACAAAATCCACCACTTCTCCGTCGGAGAGCGGAA
AGACCGCAAGTCCTATCCCTTGGACGGCCTAGAGACTATTCCTGACGGGG
AAGGACATTATTTGTACAATCTCCGGATTATCCCCACGGTGGAACAGTTT
CTATATGGCACGTCGGAGCAGAATTACGAGTTCGCGTTCCAAGAATCGTT
GCACAAGGGATTACGCCTTTCACCGGGCATGACAGCGTTGACACTGACGG
CACCAGGAATCCATTTCTTTTATGATTTTTATCCGGTCATGGTGGAGTAT
ACGCATCAGCGGACGCCGTTTTTGCAGTTTGTGACCCAGGTGTTTGCGGT
CGTTGGGGGTATTTTTACCATGTCGAATATCTTGGACTCGATTTTGTACC
AGTCGGCGAGGGCGATGAAGAAGCTGGCTTAGTAGGGATATAGGATAATG
TACCATGTGTTTGTGTGTGAGAAAGAAACGAATCTTGTATAGTGAGGAAA
AGAGCAGGGGAAGTGACGAGGGGGGAAGGAATCTGAAGTAAATCGGGAGG
AAGTGAACGGCGGGGCTCACTTCGTAACGGAGGGCCTGCCTAGCTCCGCC
GACAAAGAGACAGGCAGACAAAGAGAGAACAAAGTTAAAGCACCCACCAA
AGATAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|584942

>mRNA_3211-protein ID=mRNA_3211-protein|Name=jgi.p|Nanoce1779_2|584942|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MDVFKRALDFNVKGTETVQVRTAVGGLVTMASACLCFLLLVSELVAYSRV
EVVNHMTVDSTPPSLETAVPINFHITFPLVPCKDISFDAESTRGEAVVHL
AAQDVRKTPATDRESSLKAPQGQTGCTVEGTLFTGKVAGEFRINLGEDVP
LHLAPMVAVDSKTNYTAHKIHHFSVGERKDRKSYPLDGLETIPDGEGHYL
YNLRIIPTVEQFLYGTSEQNYEFAFQESLHKGLRLSPGMTALTLTAPGIH
FFYDFYPVMVEYTHQRTPFLQFVTQVFAVVGGIFTMSNILDSILYQSARA
MKKLA*
back to top

mRNA from alignment at scaffold_7:925678..927034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3211 ID=mRNA_3211|Name=jgi.p|Nanoce1779_2|584942|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp|location=Sequence derived from alignment at scaffold_7:925678..927034- (Nannochloropsis oceanica)
AAACCACAATTCGAACCCACAACCATCACAAACACACACAGGACCACAGA
GAGGGAGAGATGAGTGTGCTTCTCATTTCTTGCCACCTACCCCGTACTCC
GCTTGCTTTATCTGTCACTTGAAACTGTCCAGACCACTATTTGACCCGAC
ACCCATCATCATCATTACTCACACTCGACCTATCCCCCAAACCCTAACGC
AGGGCCAGTAAGTCATGGACGTCTTCAAGCGAGCCTTGGACTTCAACGTC
AAGGGCACGGAAACCGTGCAAGTGCGGACGGCGGTGGGCGGCCTGGTAAC
CATGGCGAGCGCATGTCTGTGCTTCCTGCTCCTCGTCTCGGAATTGGTGG
CCTACTCGCGGGTCGAGGTCGTAAATCACATGACCGTCGACTCCACCCCG
CCTTCCCTGGAGACGGCTGTGCCGATAAACTTCCACATTACCTTTCCCTT
GGTTCCATGCAAAGATATTAGCTTCGATGCGGAGTCCACACGGGGCGAAG
CCGTCGTGCATCTTGCAGCCCAGGACGTTCGCAAGACCCCTGCGACGGAC
CGCGAATCGAGCTTGAAAGCCCCTCAAGGCCAAACAGGCTGCACCGTGGA
AGGTACCCTGTTTACGGGCAAGGTTGCGGGGGAATTTCGGATTAATTTGG
GAGAAGACGTGCCTTTGCATTTGGCACCTATGGTGGCAGTGGATAGCAAG
ACGAATTACACAGCCCACAAAATCCACCACTTCTCCGTCGGAGAGCGGAA
AGACCGCAAGTCCTATCCCTTGGACGGCCTAGAGACTATTCCTGACGGGG
AAGGACATTATTTGTACAATCTCCGGATTATCCCCACGGTGGAACAGTTT
CTATATGGCACGTCGGAGCAGAATTACGAGTTCGCGTTCCAAGAATCGTT
GCACAAGGGATTACGCCTTTCACCGGGCATGACAGCGTTGACACTGACGG
CACCAGGAATCCATTTCTTTTATGATTTTTATCCGGTCATGGTGGAGTAT
ACGCATCAGCGGACGCCGTTTTTGCAGTTTGTGACCCAGGTGTTTGCGGT
CGTTGGGGGTATTTTTACCATGTCGAATATCTTGGACTCGATTTTGTACC
AGTCGGCGAGGGCGATGAAGAAGCTGGCTTAGTAGGGATATAGGATAATG
TACCATGTGTTTGTGTGTGAGAAAGAAACGAATCTTGTATAGTGAGGAAA
AGAGCAGGGGAAGTGACGAGGGGGGAAGGAATCTGAAGTAAATCGGGAGG
AAGTGAACGGCGGGGCTCACTTCGTAACGGAGGGCCTGCCTAGCTCCGCC
GACAAAGAGACAGGCAGACAAAGAGAGAACAAAGTTAAAGCACCCACCAA
AGATAGA
back to top

Coding sequence (CDS) from alignment at scaffold_7:925678..927034-

>mRNA_3211 ID=mRNA_3211|Name=jgi.p|Nanoce1779_2|584942|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_7:925678..927034- (Nannochloropsis oceanica)
ATGGACGTCTTCAAGCGAGCCTTGGACTTCAACGTCAAGGGCACGGAAAC
CGTGCAAGTGCGGACGGCGGTGGGCGGCCTGGTAACCATGGCGAGCGCAT
GTCTGTGCTTCCTGCTCCTCGTCTCGGAATTGGTGGCCTACTCGCGGGTC
GAGGTCGTAAATCACATGACCGTCGACTCCACCCCGCCTTCCCTGGAGAC
GGCTGTGCCGATAAACTTCCACATTACCTTTCCCTTGGTTCCATGCAAAG
ATATTAGCTTCGATGCGGAGTCCACACGGGGCGAAGCCGTCGTGCATCTT
GCAGCCCAGGACGTTCGCAAGACCCCTGCGACGGACCGCGAATCGAGCTT
GAAAGCCCCTCAAGGCCAAACAGGCTGCACCGTGGAAGGTACCCTGTTTA
CGGGCAAGGTTGCGGGGGAATTTCGGATTAATTTGGGAGAAGACGTGCCT
TTGCATTTGGCACCTATGGTGGCAGTGGATAGCAAGACGAATTACACAGC
CCACAAAATCCACCACTTCTCCGTCGGAGAGCGGAAAGACCGCAAGTCCT
ATCCCTTGGACGGCCTAGAGACTATTCCTGACGGGGAAGGACATTATTTG
TACAATCTCCGGATTATCCCCACGGTGGAACAGTTTCTATATGGCACGTC
GGAGCAGAATTACGAGTTCGCGTTCCAAGAATCGTTGCACAAGGGATTAC
GCCTTTCACCGGGCATGACAGCGTTGACACTGACGGCACCAGGAATCCAT
TTCTTTTATGATTTTTATCCGGTCATGGTGGAGTATACGCATCAGCGGAC
GCCGTTTTTGCAGTTTGTGACCCAGGTGTTTGCGGTCGTTGGGGGTATTT
TTACCATGTCGAATATCTTGGACTCGATTTTGTACCAGTCGGCGAGGGCG
ATGAAGAAGCTGGCTTAG
back to top
Synonyms
Publications