Properties
Property Name | Value |
TranscriptId | 585025 |
Track | FilteredModels2 |
ProteinId | 584939 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_7 | supercontig | scaffold_7:922548..925672 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3210 ID=mRNA_3210|Name=jgi.p|Nanoce1779_2|584939|organism=Nannochloropsis oceanica|type=mRNA|length=3125bp ACAGCGCTCCATCCCAATATTATGGAGCCATTCGCAGGTGCGGATCTCTC CGATGCCTCATGCGTCTGTCTGGGGAGTGGGCGCTTCTTGCGGGCGGTCC TGGTTCCTGCCGTGGAAGCGGCAGGCCTCAAAAGCATTGTCTTTCAGACC CGAGGTAATTCCTTCCCTTCCATGATGTACGGTCCCCGCAAAGCCACTGG CACCTACGAAGTTGACACAGTGGAATTCGATGGGCGCGTTTTAACATCTA CACATTCGGTCGTGGCGGCGGGCACATTGGGCAACGCGGAAGGTCAAGCG GCGTGGCTAAGCTTGCCTGCACAATTGCCGAATCTGCGGGTCATCGGCGT GGGTGTGACCGAGGCAGGGCTGGCTTCAGGCTCGGTTGCCATGAAGGACT TGGCTCGGTTTCTGTTTGCTTGCTTCAAGGCTAACGTGCAAGGGCCTTTG AGCGTTATCAACACGGACAATATGCCTGGCAATGGCCCCAAGATTCATAC CTTTGTGACGGACCCGGCTGTCCTTGCCGAGTTGCAGCAAGCAGAGGAAG AAAGAGAAGCTTTCCTGAGGTATCTTCAAAGCAAGGTTGTGTTCCATAGT ACCATGGTCGATCGCATAACTTCTCAACGGGCTGGTAATGGCGACGTGCC TCGCGCGGAGCCCCTGCCGAAGAAGGCTTTGGTCATCGAGGATCTTACAG GCGTCCTCCCTCCCTCCCTCGACCAGGCCCCTGGGGTGGTGGTACGACGG GTGGCCGGCGAGATTGAGGTAGACCACCAATTGAAACTCCGGATTGCGAA TGCCATTCATACCGCGATGGTCTATTGTATGGCTCTGGGGCGGATGTCCG ACACCTCGGCCTGTATTGGGCACCCATTGATCTTACCATACATTCACACG TTGTACCAACAAGATATTTTGCCGACGTCACGCACAAGTGGAGTCCCTCA AGAAGAAGTCCAAGCCGTGTATGATGACTGGGTTCGGCGTTTGCAACACC CCCAATTCGGTCTCAGCTGCTTGTTTGTATGTCAGAATGCCTCGCAAAAG CTGGGGATTCGTCTTCTGCCTACTATCGCCGCTTCCATCGAAGCCAAAGG ACTTCCGGGACCGGCTTTTGCTTTCGCCGTTGCAGCCATGCTGAGATTTT TGACCCCCTTGGGAGCGCAGCCAAGGTTTGCGCAGAACGTGTTTAAAGGG GAAATGGATGATTTGCCTGTGTGCCAGGATGTGGGTCATGTTGAGGAGGG GGGGGGGAGCAGTGGCAACGGCAGTAGCAAGAGGATAAAGATCTGTAGTG AGAGTGAGATAAGCTATGCGGGGGATATGAAGGCTGATTTTGTGGTTGGA AAGTATGATTTCAAGGATGGAGATGGGACTGTGCCTCGGTTGCTCTACGC AGGTAAGGCGGCTGCGGATGCTGCCGGGCTCGTGGATGTGGGAAGCGGAG GGGCAGCAGGGAGGGTGGCAGTGCTCCGCCAGGCGGTAGAGAAGGTGTTG GGGTTACAGGCAGGCCTAGGGGACGGAAATGTGAAAGCTTCGCCTTTTGT ATCTTTGGTGGCGACATTCTATGTTAAGATGGTGGAGGGGACACCGTGCA TGGATGTGCTTCGACCGCTCGTGGAGGGTAGCAGTAGCAACAGCACGGAG GGAGGGGGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGATCTGTC TCGGCCTTTGAGACTTGGGGATATCGCAGGGGTGGTGACAGAGGAAATGC GCAAGGTTCAAGTGATTGACTTGCACACACACCTCTTCCCTCCCTCCCAT GGTGACTTGATGCTATGGGGGATCGATGAACTCCTCACGTACCATTACCT CATCGCCGAGTATTTTCAGACGGCTCCGTGTGCCATGACACCTGATCGAT TCTTCGCCTTGTCCAAAAAAGGGCAAGCTGATTTGATTTGGGAGGGACTG TTCATCCAGCGTTCGCCGTTGTCCGAGGCCTGCAAAGGCGTGCTCACCAC GTTGGGAAAACTCGGCCTGCGGAAAGAATTGCGTTCCAGGGACTTGGATG CGGTGAGAAGCTGGTTTGCCGCACAGGACCCCGAGGTGTATTGCGAGAAG GTTTTCCAGCTTGCGGGGGTCAAGTACTGCGTGATGACTAACATTCCGTT TGACCCTGTCGAAGCGCAGCATTGGCGGCCGGAGAAAAAGAAATACTCGC GTCGCTTTCGGTCGGCTTTGCGGGTGGACCCGTTGTTGAAAGGGGACTGG AAGACAGTAAGCGCGTGTTTGAAAGAGGCTGGCTACCCCCTGACGTTGGA GGGGGCCAGGCAGTATTTGCGCGATTGGGCGACCACGATGCAGCCTGAGT ACCTAATGGCTTCCACACCCCATGATTTCCATTTTGCAGAAAAAGAAGAC AGGGGAAGGTGGAGCAGTAGCAGCAGAAACGGTCACGAGCATGGAGAGGA GGGGTGTGGGGTCACTATGCTCGATACGTCGCCGCGAGGGGCCGAGCTGC TGGAGAAAGTCTTGATTCCAGTGGCGAAAGAATTGTCCCTACCAATCGCG ATGAAACTAGGAGCGCACCGCGCCGTCAATCCCACTCTCCGAACGGGAGG GGACGGAGTGGTCACTGCTGATGTCGGGGACTTACGCCGGCTTTGTTCGG CGTACCCTGATGTAAAGTTTTTGGCCACTTTCCTCGCAAGGATCAGTCAA CATGAAGCTGCTGTGCTGGCGAATAAATTCCCTAATTTGCATTTATATGG TTGTTGGTGGTATTGTAACAACCCGAGTATCATCAGGGAAATCACAGTGA TGAGAATCGAGATTTTGGGGACGGGTTTCACAGCCCAGCACTCGGATGCG CGGGTCTTGGACCAGTTGCTTTACAAGTGGACGCACTCTCGACGGGTGAT AGGGGAGGTTTTGGCGGAGGAGTACGCCTTGGTGGCGAAAACGGGGTGGA AAGTTACGAAGGGGGAGGTTAGGAGGGATGTGGTGCGGTTGTTGGGGGGC GCGTATGAAGAATTCATGCGGAAGTAAAATAGATTGAGGGAGGAAGGATG CTGAGCAGGGGCGTGGGGAGTGAACGGCGCAGAGAAAACGAGAAGCAACA AGGGGAGGGGGAAAATCAAATTCGT back to topprotein sequence of jgi.p|Nanoce1779_2|584939 >mRNA_3210-protein ID=mRNA_3210-protein|Name=jgi.p|Nanoce1779_2|584939|organism=Nannochloropsis oceanica|type=polypeptide|length=1002bp MEPFAGADLSDASCVCLGSGRFLRAVLVPAVEAAGLKSIVFQTRGNSFPS MMYGPRKATGTYEVDTVEFDGRVLTSTHSVVAAGTLGNAEGQAAWLSLPA QLPNLRVIGVGVTEAGLASGSVAMKDLARFLFACFKANVQGPLSVINTDN MPGNGPKIHTFVTDPAVLAELQQAEEEREAFLRYLQSKVVFHSTMVDRIT SQRAGNGDVPRAEPLPKKALVIEDLTGVLPPSLDQAPGVVVRRVAGEIEV DHQLKLRIANAIHTAMVYCMALGRMSDTSACIGHPLILPYIHTLYQQDIL PTSRTSGVPQEEVQAVYDDWVRRLQHPQFGLSCLFVCQNASQKLGIRLLP TIAASIEAKGLPGPAFAFAVAAMLRFLTPLGAQPRFAQNVFKGEMDDLPV CQDVGHVEEGGGSSGNGSSKRIKICSESEISYAGDMKADFVVGKYDFKDG DGTVPRLLYAGKAAADAAGLVDVGSGGAAGRVAVLRQAVEKVLGLQAGLG DGNVKASPFVSLVATFYVKMVEGTPCMDVLRPLVEGSSSNSTEGGGEEEE EEEKEEEDLSRPLRLGDIAGVVTEEMRKVQVIDLHTHLFPPSHGDLMLWG IDELLTYHYLIAEYFQTAPCAMTPDRFFALSKKGQADLIWEGLFIQRSPL SEACKGVLTTLGKLGLRKELRSRDLDAVRSWFAAQDPEVYCEKVFQLAGV KYCVMTNIPFDPVEAQHWRPEKKKYSRRFRSALRVDPLLKGDWKTVSACL KEAGYPLTLEGARQYLRDWATTMQPEYLMASTPHDFHFAEKEDRGRWSSS SRNGHEHGEEGCGVTMLDTSPRGAELLEKVLIPVAKELSLPIAMKLGAHR AVNPTLRTGGDGVVTADVGDLRRLCSAYPDVKFLATFLARISQHEAAVLA NKFPNLHLYGCWWYCNNPSIIREITVMRIEILGTGFTAQHSDARVLDQLL YKWTHSRRVIGEVLAEEYALVAKTGWKVTKGEVRRDVVRLLGGAYEEFMR K* back to topmRNA from alignment at scaffold_7:922548..925672+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3210 ID=mRNA_3210|Name=jgi.p|Nanoce1779_2|584939|organism=Nannochloropsis oceanica|type=mRNA|length=3125bp|location=Sequence derived from alignment at scaffold_7:922548..925672+ (Nannochloropsis oceanica) ACAGCGCTCCATCCCAATATTATGGAGCCATTCGCAGGTGCGGATCTCTC
CGATGCCTCATGCGTCTGTCTGGGGAGTGGGCGCTTCTTGCGGGCGGTCC
TGGTTCCTGCCGTGGAAGCGGCAGGCCTCAAAAGCATTGTCTTTCAGACC
CGAGGTAATTCCTTCCCTTCCATGATGTACGGTCCCCGCAAAGCCACTGG
CACCTACGAAGTTGACACAGTGGAATTCGATGGGCGCGTTTTAACATCTA
CACATTCGGTCGTGGCGGCGGGCACATTGGGCAACGCGGAAGGTCAAGCG
GCGTGGCTAAGCTTGCCTGCACAATTGCCGAATCTGCGGGTCATCGGCGT
GGGTGTGACCGAGGCAGGGCTGGCTTCAGGCTCGGTTGCCATGAAGGACT
TGGCTCGGTTTCTGTTTGCTTGCTTCAAGGCTAACGTGCAAGGGCCTTTG
AGCGTTATCAACACGGACAATATGCCTGGCAATGGCCCCAAGATTCATAC
CTTTGTGACGGACCCGGCTGTCCTTGCCGAGTTGCAGCAAGCAGAGGAAG
AAAGAGAAGCTTTCCTGAGGTATCTTCAAAGCAAGGTTGTGTTCCATAGT
ACCATGGTCGATCGCATAACTTCTCAACGGGCTGGTAATGGCGACGTGCC
TCGCGCGGAGCCCCTGCCGAAGAAGGCTTTGGTCATCGAGGATCTTACAG
GCGTCCTCCCTCCCTCCCTCGACCAGGCCCCTGGGGTGGTGGTACGACGG
GTGGCCGGCGAGATTGAGGTAGACCACCAATTGAAACTCCGGATTGCGAA
TGCCATTCATACCGCGATGGTCTATTGTATGGCTCTGGGGCGGATGTCCG
ACACCTCGGCCTGTATTGGGCACCCATTGATCTTACCATACATTCACACG
TTGTACCAACAAGATATTTTGCCGACGTCACGCACAAGTGGAGTCCCTCA
AGAAGAAGTCCAAGCCGTGTATGATGACTGGGTTCGGCGTTTGCAACACC
CCCAATTCGGTCTCAGCTGCTTGTTTGTATGTCAGAATGCCTCGCAAAAG
CTGGGGATTCGTCTTCTGCCTACTATCGCCGCTTCCATCGAAGCCAAAGG
ACTTCCGGGACCGGCTTTTGCTTTCGCCGTTGCAGCCATGCTGAGATTTT
TGACCCCCTTGGGAGCGCAGCCAAGGTTTGCGCAGAACGTGTTTAAAGGG
GAAATGGATGATTTGCCTGTGTGCCAGGATGTGGGTCATGTTGAGGAGGG
GGGGGGGAGCAGTGGCAACGGCAGTAGCAAGAGGATAAAGATCTGTAGTG
AGAGTGAGATAAGCTATGCGGGGGATATGAAGGCTGATTTTGTGGTTGGA
AAGTATGATTTCAAGGATGGAGATGGGACTGTGCCTCGGTTGCTCTACGC
AGGTAAGGCGGCTGCGGATGCTGCCGGGCTCGTGGATGTGGGAAGCGGAG
GGGCAGCAGGGAGGGTGGCAGTGCTCCGCCAGGCGGTAGAGAAGGTGTTG
GGGTTACAGGCAGGCCTAGGGGACGGAAATGTGAAAGCTTCGCCTTTTGT
ATCTTTGGTGGCGACATTCTATGTTAAGATGGTGGAGGGGACACCGTGCA
TGGATGTGCTTCGACCGCTCGTGGAGGGTAGCAGTAGCAACAGCACGGAG
GGAGGGGGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGATCTGTC
TCGGCCTTTGAGACTTGGGGATATCGCAGGGGTGGTGACAGAGGAAATGC
GCAAGGTTCAAGTGATTGACTTGCACACACACCTCTTCCCTCCCTCCCAT
GGTGACTTGATGCTATGGGGGATCGATGAACTCCTCACGTACCATTACCT
CATCGCCGAGTATTTTCAGACGGCTCCGTGTGCCATGACACCTGATCGAT
TCTTCGCCTTGTCCAAAAAAGGGCAAGCTGATTTGATTTGGGAGGGACTG
TTCATCCAGCGTTCGCCGTTGTCCGAGGCCTGCAAAGGCGTGCTCACCAC
GTTGGGAAAACTCGGCCTGCGGAAAGAATTGCGTTCCAGGGACTTGGATG
CGGTGAGAAGCTGGTTTGCCGCACAGGACCCCGAGGTGTATTGCGAGAAG
GTTTTCCAGCTTGCGGGGGTCAAGTACTGCGTGATGACTAACATTCCGTT
TGACCCTGTCGAAGCGCAGCATTGGCGGCCGGAGAAAAAGAAATACTCGC
GTCGCTTTCGGTCGGCTTTGCGGGTGGACCCGTTGTTGAAAGGGGACTGG
AAGACAGTAAGCGCGTGTTTGAAAGAGGCTGGCTACCCCCTGACGTTGGA
GGGGGCCAGGCAGTATTTGCGCGATTGGGCGACCACGATGCAGCCTGAGT
ACCTAATGGCTTCCACACCCCATGATTTCCATTTTGCAGAAAAAGAAGAC
AGGGGAAGGTGGAGCAGTAGCAGCAGAAACGGTCACGAGCATGGAGAGGA
GGGGTGTGGGGTCACTATGCTCGATACGTCGCCGCGAGGGGCCGAGCTGC
TGGAGAAAGTCTTGATTCCAGTGGCGAAAGAATTGTCCCTACCAATCGCG
ATGAAACTAGGAGCGCACCGCGCCGTCAATCCCACTCTCCGAACGGGAGG
GGACGGAGTGGTCACTGCTGATGTCGGGGACTTACGCCGGCTTTGTTCGG
CGTACCCTGATGTAAAGTTTTTGGCCACTTTCCTCGCAAGGATCAGTCAA
CATGAAGCTGCTGTGCTGGCGAATAAATTCCCTAATTTGCATTTATATGG
TTGTTGGTGGTATTGTAACAACCCGAGTATCATCAGGGAAATCACAGTGA
TGAGAATCGAGATTTTGGGGACGGGTTTCACAGCCCAGCACTCGGATGCG
CGGGTCTTGGACCAGTTGCTTTACAAGTGGACGCACTCTCGACGGGTGAT
AGGGGAGGTTTTGGCGGAGGAGTACGCCTTGGTGGCGAAAACGGGGTGGA
AAGTTACGAAGGGGGAGGTTAGGAGGGATGTGGTGCGGTTGTTGGGGGGC
GCGTATGAAGAATTCATGCGGAAGTAAAATAGATTGAGGGAGGAAGGATG
CTGAGCAGGGGCGTGGGGAGTGAACGGCGCAGAGAAAACGAGAAGCAACA
AGGGGAGGGGGAAAATCAAATTCGT back to topCoding sequence (CDS) from alignment at scaffold_7:922548..925672+ >mRNA_3210 ID=mRNA_3210|Name=jgi.p|Nanoce1779_2|584939|organism=Nannochloropsis oceanica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_7:922548..925672+ (Nannochloropsis oceanica) ATGGAGCCATTCGCAGGTGCGGATCTCTCCGATGCCTCATGCGTCTGTCT GGGGAGTGGGCGCTTCTTGCGGGCGGTCCTGGTTCCTGCCGTGGAAGCGG CAGGCCTCAAAAGCATTGTCTTTCAGACCCGAGGTAATTCCTTCCCTTCC ATGATGTACGGTCCCCGCAAAGCCACTGGCACCTACGAAGTTGACACAGT GGAATTCGATGGGCGCGTTTTAACATCTACACATTCGGTCGTGGCGGCGG GCACATTGGGCAACGCGGAAGGTCAAGCGGCGTGGCTAAGCTTGCCTGCA CAATTGCCGAATCTGCGGGTCATCGGCGTGGGTGTGACCGAGGCAGGGCT GGCTTCAGGCTCGGTTGCCATGAAGGACTTGGCTCGGTTTCTGTTTGCTT GCTTCAAGGCTAACGTGCAAGGGCCTTTGAGCGTTATCAACACGGACAAT ATGCCTGGCAATGGCCCCAAGATTCATACCTTTGTGACGGACCCGGCTGT CCTTGCCGAGTTGCAGCAAGCAGAGGAAGAAAGAGAAGCTTTCCTGAGGT ATCTTCAAAGCAAGGTTGTGTTCCATAGTACCATGGTCGATCGCATAACT TCTCAACGGGCTGGTAATGGCGACGTGCCTCGCGCGGAGCCCCTGCCGAA GAAGGCTTTGGTCATCGAGGATCTTACAGGCGTCCTCCCTCCCTCCCTCG ACCAGGCCCCTGGGGTGGTGGTACGACGGGTGGCCGGCGAGATTGAGGTA GACCACCAATTGAAACTCCGGATTGCGAATGCCATTCATACCGCGATGGT CTATTGTATGGCTCTGGGGCGGATGTCCGACACCTCGGCCTGTATTGGGC ACCCATTGATCTTACCATACATTCACACGTTGTACCAACAAGATATTTTG CCGACGTCACGCACAAGTGGAGTCCCTCAAGAAGAAGTCCAAGCCGTGTA TGATGACTGGGTTCGGCGTTTGCAACACCCCCAATTCGGTCTCAGCTGCT TGTTTGTATGTCAGAATGCCTCGCAAAAGCTGGGGATTCGTCTTCTGCCT ACTATCGCCGCTTCCATCGAAGCCAAAGGACTTCCGGGACCGGCTTTTGC TTTCGCCGTTGCAGCCATGCTGAGATTTTTGACCCCCTTGGGAGCGCAGC CAAGGTTTGCGCAGAACGTGTTTAAAGGGGAAATGGATGATTTGCCTGTG TGCCAGGATGTGGGTCATGTTGAGGAGGGGGGGGGGAGCAGTGGCAACGG CAGTAGCAAGAGGATAAAGATCTGTAGTGAGAGTGAGATAAGCTATGCGG GGGATATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGA GATGGGACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGC TGCCGGGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAG TGCTCCGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGG GACGGAAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTA TGTTAAGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCG TGGAGGGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAG GAGGAGGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGA TATCGCAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACT TGCACACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGG ATCGATGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGAC GGCTCCGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAG GGCAAGCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTG TCCGAGGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCG GAAAGAATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCG CACAGGACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTC AAGTACTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCA TTGGCGGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGC GGGTGGACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTG AAAGAGGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCG CGATTGGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCC ATGATTTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGC AGCAGAAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCT CGATACGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAG TGGCGAAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGC GCCGTCAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGA TGTCGGGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTT TGGCCACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCG AATAAATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAA CCCGAGTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGA CGGGTTTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTT TACAAGTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGA GTACGCCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTA GGAGGGATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGG AAGTAA back to top
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