jgi.p|Nanoce1779_2|584929, mRNA_3208 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584929
Unique NamemRNA_3208
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_7:918821..920274 +

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Properties
Property NameValue
TranscriptId585015
TrackFilteredModels2
ProteinId584929
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:918821..920274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584929gene_3208Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584929mRNA_3208-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3208CDS_3208Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Nanoce1779_2|584929|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
CAGGATCACGAGGTTCTGAAAGCTGTTCGGCAATATGCCACGTCCAGGGG
TCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGCTGCCCCACCAGCCTTC
TCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCGCAGCAGTCACGGTCCA
CGGCGGGGATGGCTACAGCTTGTGCATCGAGTGCGGCCAGTCCACCATCG
AGGGCCTGTACAAGGAGTACTCCAAGGACAATATAAGGCTTTCGAGATGC
GACAAATGCGGCGCCGTAGCGGACCGTCTGGTGGAGTACGAACTCATTTT
AGTAGGCCTAGATCTGGCGTTGCATCGCTTGCCGGCCTGGCGACACATTC
TCTTCAATCGACAACCCCATGCCAAGTTGCAATGGCCCCAGCTCTTCCGC
ATGGCGATCGTCACAGTCTTGATCGACACCCACATCAAGTACGCAGTCTA
TGTTCACTACTCCTCCCTCGCTGCCACCAGCACACAGCCTCCCAGCCACG
TCGACCCCACCAACACACCCACCTACCAAGTCGCCCTTCTTCTCCGCATC
CTCCTCCTTTCCTTTCTCGAGCATGTGGTATTTATCGGGGTTGTGACTTG
CATGGTTGAGTGGAAAATAGGTGCCCTACGACTGTCATGGTCACCAATTC
ATGCGCCTTCCTTGCCCTCGTCACCCCTTTTCTCTGTCACGACACCCTCC
CCCGCCGCCGCAGCCTCAAAGGTATCACTATCTAAAGCATCAAGGTCATT
CTCCTCCTTTTTCTCTTCAGTCGTTACAAGGAAGCTGGTGCAAGGCCTTC
TTTACCCGACATTTGGACGTTTGATCGTGGTCTTTGTGATGGTTTGGGAC
CCTGCGATCGTCGTTGCCAATCTCATAAGTCTCCTCGTCCTGTCCTCTCA
ATGGCAAGCGCTTCGAACTGTGGTTTCCGCGGCGATGGCGCAGAGAGAAA
GAAGAAAGGAGAAGGAAAGTATAAAAGGTTGGAGGGTAGAGATGGACGCA
GCGGCACTGCCGTTTGTGGTAGGGTTGATATGCAAAATAATGCTGCGTCT
GGCGGCGTTTCGTGTGGATGGCTCGTGTACGAATCTGTATTTAGTGTAAA
GTGTGTGGAATGATTGTAAATGAAAGAATCAATAAACACGAATGGCAT
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protein sequence of jgi.p|Nanoce1779_2|584929

>mRNA_3208-protein ID=mRNA_3208-protein|Name=jgi.p|Nanoce1779_2|584929|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MPRPGVFPPTKAARRAAAPPAFSPAPLFSLPHTAAVTVHGGDGYSLCIEC
GQSTIEGLYKEYSKDNIRLSRCDKCGAVADRLVEYELILVGLDLALHRLP
AWRHILFNRQPHAKLQWPQLFRMAIVTVLIDTHIKYAVYVHYSSLAATST
QPPSHVDPTNTPTYQVALLLRILLLSFLEHVVFIGVVTCMVEWKIGALRL
SWSPIHAPSLPSSPLFSVTTPSPAAAASKVSLSKASRSFSSFFSSVVTRK
LVQGLLYPTFGRLIVVFVMVWDPAIVVANLISLLVLSSQWQALRTVVSAA
MAQRERRKEKESIKGWRVEMDAAALPFVVGLICKIMLRLAAFRVDGSCTN
LYLV*
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mRNA from alignment at scaffold_7:918821..920274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Nanoce1779_2|584929|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp|location=Sequence derived from alignment at scaffold_7:918821..920274+ (Nannochloropsis oceanica)
CAGGATCACGAGGTTCTGAAAGCTGTTCGGCAATATGCCACGTCCAGGGG
TCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGCTGCCCCACCAGCCTTC
TCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCGCAGCAGTCACGGTCCA
CGGCGGGGATGGCTACAGCTTGTGCATCGAGTGCGGCCAGTCCACCATCG
AGGGCCTGTACAAGGAGTACTCCAAGGACAATATAAGGCTTTCGAGATGC
GTACGTGATACCTGGTCCTTTGTCGTCTCATCTACCTTTCGGCCTCTTTT
CCTCACGCAGTTGTCATGCCCATCACTCATTCATCCAGGACAAATGCGGC
GCCGTAGCGGACCGTCTGGTGGAGTACGAACTCATTTTAGTAGGCCTAGA
TCTGGCGTTGCATCGCTTGCCGGCCTGGCGACACATTCTCTTCAATCGAC
AACCCCATGCCAAGTTGCAATGGCCCCAGGTATGTGTGTGAAAGTGACCG
CCGGCAGTTTTAGTCGATGGAGCGGGCGAAAATGTAGGAGGACGCCCACC
GATCTGATGGCTTGAAATATGGCCAGCTCTACTATTTACATGTCAAAAGT
GTGACAAAACAGAGACATGTCAAAGTTTCCTTTCTGCATTCATTTCTCCT
GTCTTCCCTACTTCCCACCCTACCCAACAATCAACAAATCGATGAAGCTC
TTCCGCATGGCGATCGTCACAGTCTTGATCGACACCCACATCAAGTACGC
AGTCTATGTTCACTACTCCTCCCTCGCTGCCACCAGCACACAGCCTCCCA
GCCACGTCGACCCCACCAACACACCCACCTACCAAGTCGCCCTTCTTCTC
CGCATCCTCCTCCTTTCCTTTCTCGAGCATGTGGTATTTATCGGGGTTGT
GACTTGCATGGTTGAGTGGAAAATAGGTGCCCTACGACTGTCATGGTCAC
CAATTCATGCGCCTTCCTTGCCCTCGTCACCCCTTTTCTCTGTCACGACA
CCCTCCCCCGCCGCCGCAGCCTCAAAGGTATCACTATCTAAAGCATCAAG
GTCATTCTCCTCCTTTTTCTCTTCAGTCGTTACAAGGAAGCTGGTGCAAG
GCCTTCTTTACCCGACATTTGGACGTTTGATCGTGGTCTTTGTGATGGTT
TGGGACCCTGCGATCGTCGTTGCCAATCTCATAAGTCTCCTCGTCCTGTC
CTCTCAATGGCAAGCGCTTCGAACTGTGGTTTCCGCGGCGATGGCGCAGA
GAGAAAGAAGAAAGGAGAAGGAAAGTATAAAAGGTTGGAGGGTAGAGATG
GACGCAGCGGCACTGCCGTTTGTGGTAGGGTTGATATGCAAAATAATGCT
GCGTCTGGCGGCGTTTCGTGTGGATGGCTCGTGTACGAATCTGTATTTAG
TGTAAAGTGTGTGGAATGATTGTAAATGAAAGAATCAATAAACACGAATG
GCAT
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Coding sequence (CDS) from alignment at scaffold_7:918821..920274+

>mRNA_3208 ID=mRNA_3208|Name=jgi.p|Nanoce1779_2|584929|organism=Nannochloropsis oceanica|type=CDS|length=3195bp|location=Sequence derived from alignment at scaffold_7:918821..920274+ (Nannochloropsis oceanica)
ATGCCACGTCCAGGGGTCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGC
TGCCCCACCAGCCTTCTCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCG
CAGCAGTCACGGTCCACGGCGGGGATGGCTACAGCTTGTGCATCGAGTGC
GGCCAGTCCACCATCGAGGGCCTGTACAAGGAGTACTCCAAGGACAATAT
AAGGCTTTCGAGATGCGACAAATGCGGCGCCGTAGCGGACCGTCTGGTGG
AGTACGAACTCATTTTAGTAGGCCTAGATCTGGCGTTGCATCGCTTGCCG
GCCTGGCGACACATTCTCTTCAATCGACAACCCCATGCCAAGTTGCAATG
GCCCCAGCTCTTCCGCATGGCGATCGTCACAGTCTTGATCGACACCCACA
TCAAGTACGCAGTCTATGTTCACTACTCCTCCCTCGCTGCCACCAGCACA
CAGCCTCCCAGCCACGTCGACCCCACCAACACACCCACCTACCAAGTCGC
CCTTCTTCTCCGCATCCTCCTCCTTTCCTTTCTCGAGCATGTGGTATTTA
TCGGGGTTGTGACTTGCATGGTTGAGTGGAAAATAGGTGCCCTACGACTG
TCATGGTCACCAATTCATGCGCCTTCCTTGCCCTCGTCACCCCTTTTCTC
TGTCACGACACCCTCCCCCGCCGCCGCAGCCTCAAAGGTATCACTATCTA
AAGCATCAAGGTCATTCTCCTCCTTTTTCTCTTCAGTCGTTACAAGGAAG
CTGGTGCAAGGCCTTCTTTACCCGACATTTGGACGTTTGATCGTGGTCTT
TGTGATGGTTTGGGACCCTGCGATCGTCGTTGCCAATCTCATAAGTCTCC
TCGTCCTGTCCTCTCAATGGCAAGCGCTTCGAACTGTGGTTTCCGCGGCG
ATGGCGCAGAGAGAAAGAAGAAAGGAGAAGGAAAGTATAAAAGGTTGGAG
GGTAGAGATGGACGCAGCGGCACTGCCGTTTGTGGTAGGGTTGATATGCA
AAATAATGCTGCGTCTGGCGGCGTTTCGTGTGGATGGCTCGTGTACGAAT
CTGTATTTAGTGTAAATGCCACGTCCAGGGGTCTTTCCTCCCACCAAAGC
TGCTCGTCGTGCCGCTGCCCCACCAGCCTTCTCCCCTGCCCCTCTCTTTT
CCCTTCCTCACACCGCAGCAGTCACGGTCCACGGCGGGGATGGCTACAGC
TTGTGCATCGAGTGCGGCCAGTCCACCATCGAGGGCCTGTACAAGGAGTA
CTCCAAGGACAATATAAGGCTTTCGAGATGCGACAAATGCGGCGCCGTAG
CGGACCGTCTGGTGGAGTACGAACTCATTTTAGTAGGCCTAGATCTGGCG
TTGCATCGCTTGCCGGCCTGGCGACACATTCTCTTCAATCGACAACCCCA
TGCCAAGTTGCAATGGCCCCAGCTCTTCCGCATGGCGATCGTCACAGTCT
TGATCGACACCCACATCAAGTACGCAGTCTATGTTCACTACTCCTCCCTC
GCTGCCACCAGCACACAGCCTCCCAGCCACGTCGACCCCACCAACACACC
CACCTACCAAGTCGCCCTTCTTCTCCGCATCCTCCTCCTTTCCTTTCTCG
AGCATGTGGTATTTATCGGGGTTGTGACTTGCATGGTTGAGTGGAAAATA
GGTGCCCTACGACTGTCATGGTCACCAATTCATGCGCCTTCCTTGCCCTC
GTCACCCCTTTTCTCTGTCACGACACCCTCCCCCGCCGCCGCAGCCTCAA
AGGTATCACTATCTAAAGCATCAAGGTCATTCTCCTCCTTTTTCTCTTCA
GTCGTTACAAGGAAGCTGGTGCAAGGCCTTCTTTACCCGACATTTGGACG
TTTGATCGTGGTCTTTGTGATGGTTTGGGACCCTGCGATCGTCGTTGCCA
ATCTCATAAGTCTCCTCGTCCTGTCCTCTCAATGGCAAGCGCTTCGAACT
GTGGTTTCCGCGGCGATGGCGCAGAGAGAAAGAAGAAAGGAGAAGGAAAG
TATAAAAGGTTGGAGGGTAGAGATGGACGCAGCGGCACTGCCGTTTGTGG
TAGGGTTGATATGCAAAATAATGCTGCGTCTGGCGGCGTTTCGTGTGGAT
GGCTCGTGTACGAATCTGTATTTAGTGTAAATGCCACGTCCAGGGGTCTT
TCCTCCCACCAAAGCTGCTCGTCGTGCCGCTGCCCCACCAGCCTTCTCCC
CTGCCCCTCTCTTTTCCCTTCCTCACACCGCAGCAGTCACGGTCCACGGC
GGGGATGGCTACAGCTTGTGCATCGAGTGCGGCCAGTCCACCATCGAGGG
CCTGTACAAGGAGTACTCCAAGGACAATATAAGGCTTTCGAGATGCGACA
AATGCGGCGCCGTAGCGGACCGTCTGGTGGAGTACGAACTCATTTTAGTA
GGCCTAGATCTGGCGTTGCATCGCTTGCCGGCCTGGCGACACATTCTCTT
CAATCGACAACCCCATGCCAAGTTGCAATGGCCCCAGCTCTTCCGCATGG
CGATCGTCACAGTCTTGATCGACACCCACATCAAGTACGCAGTCTATGTT
CACTACTCCTCCCTCGCTGCCACCAGCACACAGCCTCCCAGCCACGTCGA
CCCCACCAACACACCCACCTACCAAGTCGCCCTTCTTCTCCGCATCCTCC
TCCTTTCCTTTCTCGAGCATGTGGTATTTATCGGGGTTGTGACTTGCATG
GTTGAGTGGAAAATAGGTGCCCTACGACTGTCATGGTCACCAATTCATGC
GCCTTCCTTGCCCTCGTCACCCCTTTTCTCTGTCACGACACCCTCCCCCG
CCGCCGCAGCCTCAAAGGTATCACTATCTAAAGCATCAAGGTCATTCTCC
TCCTTTTTCTCTTCAGTCGTTACAAGGAAGCTGGTGCAAGGCCTTCTTTA
CCCGACATTTGGACGTTTGATCGTGGTCTTTGTGATGGTTTGGGACCCTG
CGATCGTCGTTGCCAATCTCATAAGTCTCCTCGTCCTGTCCTCTCAATGG
CAAGCGCTTCGAACTGTGGTTTCCGCGGCGATGGCGCAGAGAGAAAGAAG
AAAGGAGAAGGAAAGTATAAAAGGTTGGAGGGTAGAGATGGACGCAGCGG
CACTGCCGTTTGTGGTAGGGTTGATATGCAAAATAATGCTGCGTCTGGCG
GCGTTTCGTGTGGATGGCTCGTGTACGAATCTGTATTTAGTGTAA
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Synonyms
Publications