jgi.p|Nanoce1779_2|584920, mRNA_3206 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584920
Unique Name	mRNA_3206
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1590
Alignment location	scaffold_7:914507..916374 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585006
Track	FilteredModels2
ProteinId	584920

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:914507..916374 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584920	gene_3206	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584920	mRNA_3206-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3206	CDS_3206	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:914507..916374+
coding sequence from alignment at scaffold_7:914507..916374+

mRNA sequence

>mRNA_3206 ID=mRNA_3206|Name=jgi.p|Nanoce1779_2|584920|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
ACAGGGCGTGGACAGCCGTATCTTGTGGTTACAGCCCTCCGAAGGGGGGT
AACGCAAGGAGACGACGAAGTAGACGTGCGAGGGACTGAGGCTTCGAGAC
GCACTTGCTTCCAGCATCAACAACGACCGACCCCATCGCACGACTTCACC
ACAAAAATGCACGCCCAACGCTTGCAGTCGCTGCTTGGAGCGGCTCTCAT
TTTCTTCAATGTGACCGAAGCCTTTGTTCTGAGTCGCTCACCCCTATTGC
CGTCAATATCGCGGAGCCCCTGCAGCCGCACCGGCACTTCCACCACAAGC
AAGCGCTCCGTTGCATTCCAAGACAACCAGCACCCTCGCAAGAGCCAGCA
ATCACACGCGAAGGACGCCGACGACATTTTGGCTGTTTTGGAAGGTAAAT
TCTATCAGTGGAAGCACGGGCCCGTGCACTATGTCGAGGCGGGCGGAGAG
ACGGCGGCTGCCGAAGCTTTCCCGGTGCTGCTGCTACCAGGCTTCGGCGT
CTCCTCAAGCCACTTTGAACGTAACATTGGCCCCCTCTCCGCCGCTGGGC
ACCATGTCTTCGCCATCGACTATCTGGGGCAAGGCAAGAGCTGGCCTGAC
AAAGACCTCAAGCAAGAGGACAAGTTGGTGTTTTCCATTGACATGTGGAG
CGAGCAAATCGTGTCGTTCATCCAGGACGTGATTGGTCGCCCTGTGTACA
TCTCAGGGAATTCGTTAGGAGGCTTCCTCGCGACAACGGTAGCGGCCCGG
CACCCTCAATGGGTCAAGGGTGTAATGCTGTTGAACAGCACGCCCTTTTG
GTCCTTTGCGCCGAATCGGAAAAAGTTGCAGAAGTGGGTCAAAGAGATAA
TAATTCCGTACGACGGTGTCCTCCCAGCCCCTCAACCCCTCTACGAAATC
GGCTCCCGTTGGTACAACTCCCTCCGGAACAAAAATACCGTCAAAAGCAT
GCTCGGGGCCGTGTACGCGGACGACAAGGCCTGGGGCGATCGTCTCGTCG
AGCAGATTATGACGCCCACGGAGCACAAGCACGGCCAGTCCGTGTTTACC
TCCATCCTCTTCGCCCCCAAGCCCGAACACACCTTCGAGGAGACCCTCGC
AAGCCTTCAACAAGCCGATATCCCCCTCCTCCTCCTCTACGGGAGGGAAG
ACCCCTGGATTTTTCCCTCCTGGGGGCAGCGCGTAAAGAGACAGGTGCCC
AAAGCGACGTATTTCGAGCTGAGCCCGGCGGGCCACTGCCCCCACCATGA
GGCGCCACAGGCAGTGAATGCCTTGATGCTGGAGTGGTTGCAGGAGCAGC
AGGAGCAAGGGGGCAAGGAGGGAAGGAGAGAGCAAGAGGAAGATGGAAGC
CAGGGAGGGAGCAGAGGAGGGAGGGAAGGGAGGAGAACGTTTTTTGAGCC
AGTGACGGGGAAGGAGATTAGTGTGGCGCTCTTGGATGGCCAGCCGCGGG
ACGTGCTCGAATGGGTGTTGGCGAGCACCTTTTTCAGATGATGAAGGGAG
GGAAATAGGTGGAGGGAGGGAAAGGAAGTGTGTGTAATATTCATTTTCCA
GCGCGGGAAAGAGTGTGAATGGGAAAGGGGAGGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|584920

>mRNA_3206-protein ID=mRNA_3206-protein|Name=jgi.p|Nanoce1779_2|584920|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MHAQRLQSLLGAALIFFNVTEAFVLSRSPLLPSISRSPCSRTGTSTTSKR
SVAFQDNQHPRKSQQSHAKDADDILAVLEGKFYQWKHGPVHYVEAGGETA
AAEAFPVLLLPGFGVSSSHFERNIGPLSAAGHHVFAIDYLGQGKSWPDKD
LKQEDKLVFSIDMWSEQIVSFIQDVIGRPVYISGNSLGGFLATTVAARHP
QWVKGVMLLNSTPFWSFAPNRKKLQKWVKEIIIPYDGVLPAPQPLYEIGS
RWYNSLRNKNTVKSMLGAVYADDKAWGDRLVEQIMTPTEHKHGQSVFTSI
LFAPKPEHTFEETLASLQQADIPLLLLYGREDPWIFPSWGQRVKRQVPKA
TYFELSPAGHCPHHEAPQAVNALMLEWLQEQQEQGGKEGRREQEEDGSQG
GSRGGREGRRTFFEPVTGKEISVALLDGQPRDVLEWVLASTFFR*

mRNA from alignment at scaffold_7:914507..916374+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3206 ID=mRNA_3206|Name=jgi.p|Nanoce1779_2|584920|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp|location=Sequence derived from alignment at scaffold_7:914507..916374+ (Nannochloropsis oceanica)
ACAGGGCGTGGACAGCCGTATCTTGTGGTTACAGCCCTCCGAAGGGGGGT
AACGCAAGGAGACGACGAAGTAGACGTGCGAGGGACTGAGGCTTCGAGAC
GCACTTGCTTCCAGCATCAACAACGACCGACCCCATCGCACGACTTCACC
ACAAAAATGCACGCCCAACGCTTGCAGTCGCTGCTTGGAGCGGCTCTCAT
TTTCTTCAATGTGACCGAAGCCTTTGTTCTGAGTCGCTCACCCCTATTGC
CGTCAATATCGCGGAGCCCCTGCAGCCGCACCGGCACTTCCACCACAAGC
AAGCGCTCCGTTGCATTCCAAGACAACCAGCACCCTCGCAAGAGCCAGCA
ATCACACGCGAAGGACGCCGACGACATTTTGGCTGTTTTGGAAGGTAAAT
TCTATCAGTGGAAGCACGGGCCCGTGCACTATGTCGAGGCGGGCGGAGAG
ACGGCGGCTGCCGAAGCTTTCCCGGTGCTGCTGCTACCAGGTGAGATGAC
TAGTGAGAAAGAGTGTTAGGGGATGACAACAATAAAGATGTAGATGTTCA
GAAATGGGGTGTGGGGCTTATAGATCCCCATCTCACTCTGGGTCTTCCTG
TCTCCCCCTTGCACTTCTACCCCAACGAAGGCTTCGGCGTCTCCTCAAGC
CACTTTGAACGTAACATTGGCCCCCTCTCCGCCGCTGGGCACCATGTCTT
CGCCATCGACTATCTGGGGCAAGGCAAGAGCTGGCCTGACAAAGACCTCA
AGCAAGAGGACAAGTTGGTGTTTTCCATTGACATGTGGAGCGAGCAAATC
GTGTCGTTCATCCAGGACGTGATTGGTCGCCCTGTGTACATCTCAGGGAA
TTCGTTAGGAGGCTTCCTCGCGACAACGGTAGCGGCCCGGCACCCTCAAT
GGGTCAAGGGTGTAATGCTGTTGAACAGCACGCCCTTTTGGTCCTTTGCG
CCGAATCGGAAAAAGTTGCAGAAGTGGGTCAAAGAGGTAGGTGTAGGCGA
GGGAAAGGAGAGAGGGAGGGTGATCGAGGGTCGAAAGTGATGGACTCAGC
CCCAGGACCTCAAAATACACGTAAAGAATGTTCCTTCCTGCTTATTGTAC
CTTTCCTCCCTTTCTTACTTCCAGATAATAATTCCGTACGACGGTGTCCT
CCCAGCCCCTCAACCCCTCTACGAAATCGGCTCCCGTTGGTACAACTCCC
TCCGGAACAAAAATACCGTCAAAAGCATGCTCGGGGCCGTGTACGCGGAC
GACAAGGCCTGGGGCGATCGTCTCGTCGAGCAGATTATGACGCCCACGGA
GCACAAGCACGGCCAGTCCGTGTTTACCTCCATCCTCTTCGCCCCCAAGC
CCGAACACACCTTCGAGGAGACCCTCGCAAGCCTTCAACAAGCCGATATC
CCCCTCCTCCTCCTCTACGGGAGGGAAGACCCCTGGATTTTTCCCTCCTG
GGGGCAGCGCGTAAAGAGACAGGTGCCCAAAGCGACGTATTTCGAGCTGA
GCCCGGCGGGCCACTGCCCCCACCATGAGGCGCCACAGGCAGTGAATGCC
TTGATGCTGGAGTGGTTGCAGGAGCAGCAGGAGCAAGGGGGCAAGGAGGG
AAGGAGAGAGCAAGAGGAAGATGGAAGCCAGGGAGGGAGCAGAGGAGGGA
GGGAAGGGAGGAGAACGTTTTTTGAGCCAGTGACGGGGAAGGAGATTAGT
GTGGCGCTCTTGGATGGCCAGCCGCGGGACGTGCTCGAATGGGTGTTGGC
GAGCACCTTTTTCAGATGATGAAGGGAGGGAAATAGGTGGAGGGAGGGAA
AGGAAGTGTGTGTAATATTCATTTTCCAGCGCGGGAAAGAGTGTGAATGG
GAAAGGGGAGGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_7:914507..916374+

>mRNA_3206 ID=mRNA_3206|Name=jgi.p|Nanoce1779_2|584920|organism=Nannochloropsis oceanica|type=CDS|length=4005bp|location=Sequence derived from alignment at scaffold_7:914507..916374+ (Nannochloropsis oceanica)
ATGCACGCCCAACGCTTGCAGTCGCTGCTTGGAGCGGCTCTCATTTTCTT
CAATGTGACCGAAGCCTTTGTTCTGAGTCGCTCACCCCTATTGCCGTCAA
TATCGCGGAGCCCCTGCAGCCGCACCGGCACTTCCACCACAAGCAAGCGC
TCCGTTGCATTCCAAGACAACCAGCACCCTCGCAAGAGCCAGCAATCACA
CGCGAAGGACGCCGACGACATTTTGGCTGTTTTGGAAGGTAAATTCTATC
AGTGGAAGCACGGGCCCGTGCACTATGTCGAGGCGGGCGGAGAGACGGCG
GCTGCCGAAGCTTTCCCGGTGCTGCTGCTACCAGGCTTCGGCGTCTCCTC
AAGCCACTTTGAACGTAACATTGGCCCCCTCTCCGCCGCTGGGCACCATG
TCTTCGCCATCGACTATCTGGGGCAAGGCAAGAGCTGGCCTGACAAAGAC
CTCAAGCAAGAGGACAAGTTGGTGTTTTCCATTGACATGTGGAGCGAGCA
AATCGTGTCGTTCATCCAGGACGTGATTGGTCGCCCTGTGTACATCTCAG
GGAATTCGTTAGGAGGCTTCCTCGCGACAACGGTAGCGGCCCGGCACCCT
CAATGGGTCAAGGGTGTAATGCTGTTGAACAGCACGCCCTTTTGGTCCTT
TGCGCCGAATCGGAAAAAGTTGCAGAAGTGGGTCAAAGAGATAATAATTC
CGTACGACGGTGTCCTCCCAGCCCCTCAACCCCTCTACGAAATCGGCTCC
CGTTGGTACAACTCCCTCCGGAACAAAAATACCGTCAAAAGCATGCTCGG
GGCCGTGTACGCGGACGACAAGGCCTGGGGCGATCGTCTCGTCGAGCAGA
TTATGACGCCCACGGAGCACAAGCACGGCCAGTCCGTGTTTACCTCCATC
CTCTTCGCCCCCAAGCCCGAACACACCTTCGAGGAGACCCTCGCAAGCCT
TCAACAAGCCGATATCCCCCTCCTCCTCCTCTACGGGAGGGAAGACCCCT
GGATTTTTCCCTCCTGGGGGCAGCGCGTAAAGAGACAGGTGCCCAAAGCG
ACGTATTTCGAGCTGAGCCCGGCGGGCCACTGCCCCCACCATGAGGCGCC
ACAGGCAGTGAATGCCTTGATGCTGGAGTGGTTGCAGGAGCAGCAGGAGC
AAGGGGGCAAGGAGGGAAGGAGAGAGCAAGAGGAAGATGGAAGCCAGGGA
GGGAGCAGAGGAGGGAGGGAAGGGAGGAGAACGTTTTTTGAGCCAGTGAC
GGGGAAGGAGATTAGTGTGGCGCTCTTGGATGGCCAGCCGCGGGACGTGC
TCGAATGGGTGTTGGCGAGCACCTTTTTCAGATGAATGCACGCCCAACGC
TTGCAGTCGCTGCTTGGAGCGGCTCTCATTTTCTTCAATGTGACCGAAGC
CTTTGTTCTGAGTCGCTCACCCCTATTGCCGTCAATATCGCGGAGCCCCT
GCAGCCGCACCGGCACTTCCACCACAAGCAAGCGCTCCGTTGCATTCCAA
GACAACCAGCACCCTCGCAAGAGCCAGCAATCACACGCGAAGGACGCCGA
CGACATTTTGGCTGTTTTGGAAGGTAAATTCTATCAGTGGAAGCACGGGC
CCGTGCACTATGTCGAGGCGGGCGGAGAGACGGCGGCTGCCGAAGCTTTC
CCGGTGCTGCTGCTACCAGGCTTCGGCGTCTCCTCAAGCCACTTTGAACG
TAACATTGGCCCCCTCTCCGCCGCTGGGCACCATGTCTTCGCCATCGACT
ATCTGGGGCAAGGCAAGAGCTGGCCTGACAAAGACCTCAAGCAAGAGGAC
AAGTTGGTGTTTTCCATTGACATGTGGAGCGAGCAAATCGTGTCGTTCAT
CCAGGACGTGATTGGTCGCCCTGTGTACATCTCAGGGAATTCGTTAGGAG
GCTTCCTCGCGACAACGGTAGCGGCCCGGCACCCTCAATGGGTCAAGGGT
GTAATGCTGTTGAACAGCACGCCCTTTTGGTCCTTTGCGCCGAATCGGAA
AAAGTTGCAGAAGTGGGTCAAAGAGATAATAATTCCGTACGACGGTGTCC
TCCCAGCCCCTCAACCCCTCTACGAAATCGGCTCCCGTTGGTACAACTCC
CTCCGGAACAAAAATACCGTCAAAAGCATGCTCGGGGCCGTGTACGCGGA
CGACAAGGCCTGGGGCGATCGTCTCGTCGAGCAGATTATGACGCCCACGG
AGCACAAGCACGGCCAGTCCGTGTTTACCTCCATCCTCTTCGCCCCCAAG
CCCGAACACACCTTCGAGGAGACCCTCGCAAGCCTTCAACAAGCCGATAT
CCCCCTCCTCCTCCTCTACGGGAGGGAAGACCCCTGGATTTTTCCCTCCT
GGGGGCAGCGCGTAAAGAGACAGGTGCCCAAAGCGACGTATTTCGAGCTG
AGCCCGGCGGGCCACTGCCCCCACCATGAGGCGCCACAGGCAGTGAATGC
CTTGATGCTGGAGTGGTTGCAGGAGCAGCAGGAGCAAGGGGGCAAGGAGG
GAAGGAGAGAGCAAGAGGAAGATGGAAGCCAGGGAGGGAGCAGAGGAGGG
AGGGAAGGGAGGAGAACGTTTTTTGAGCCAGTGACGGGGAAGGAGATTAG
TGTGGCGCTCTTGGATGGCCAGCCGCGGGACGTGCTCGAATGGGTGTTGG
CGAGCACCTTTTTCAGATGAATGCACGCCCAACGCTTGCAGTCGCTGCTT
GGAGCGGCTCTCATTTTCTTCAATGTGACCGAAGCCTTTGTTCTGAGTCG
CTCACCCCTATTGCCGTCAATATCGCGGAGCCCCTGCAGCCGCACCGGCA
CTTCCACCACAAGCAAGCGCTCCGTTGCATTCCAAGACAACCAGCACCCT
CGCAAGAGCCAGCAATCACACGCGAAGGACGCCGACGACATTTTGGCTGT
TTTGGAAGGTAAATTCTATCAGTGGAAGCACGGGCCCGTGCACTATGTCG
AGGCGGGCGGAGAGACGGCGGCTGCCGAAGCTTTCCCGGTGCTGCTGCTA
CCAGGCTTCGGCGTCTCCTCAAGCCACTTTGAACGTAACATTGGCCCCCT
CTCCGCCGCTGGGCACCATGTCTTCGCCATCGACTATCTGGGGCAAGGCA
AGAGCTGGCCTGACAAAGACCTCAAGCAAGAGGACAAGTTGGTGTTTTCC
ATTGACATGTGGAGCGAGCAAATCGTGTCGTTCATCCAGGACGTGATTGG
TCGCCCTGTGTACATCTCAGGGAATTCGTTAGGAGGCTTCCTCGCGACAA
CGGTAGCGGCCCGGCACCCTCAATGGGTCAAGGGTGTAATGCTGTTGAAC
AGCACGCCCTTTTGGTCCTTTGCGCCGAATCGGAAAAAGTTGCAGAAGTG
GGTCAAAGAGATAATAATTCCGTACGACGGTGTCCTCCCAGCCCCTCAAC
CCCTCTACGAAATCGGCTCCCGTTGGTACAACTCCCTCCGGAACAAAAAT
ACCGTCAAAAGCATGCTCGGGGCCGTGTACGCGGACGACAAGGCCTGGGG
CGATCGTCTCGTCGAGCAGATTATGACGCCCACGGAGCACAAGCACGGCC
AGTCCGTGTTTACCTCCATCCTCTTCGCCCCCAAGCCCGAACACACCTTC
GAGGAGACCCTCGCAAGCCTTCAACAAGCCGATATCCCCCTCCTCCTCCT
CTACGGGAGGGAAGACCCCTGGATTTTTCCCTCCTGGGGGCAGCGCGTAA
AGAGACAGGTGCCCAAAGCGACGTATTTCGAGCTGAGCCCGGCGGGCCAC
TGCCCCCACCATGAGGCGCCACAGGCAGTGAATGCCTTGATGCTGGAGTG
GTTGCAGGAGCAGCAGGAGCAAGGGGGCAAGGAGGGAAGGAGAGAGCAAG
AGGAAGATGGAAGCCAGGGAGGGAGCAGAGGAGGGAGGGAAGGGAGGAGA
ACGTTTTTTGAGCCAGTGACGGGGAAGGAGATTAGTGTGGCGCTCTTGGA
TGGCCAGCCGCGGGACGTGCTCGAATGGGTGTTGGCGAGCACCTTTTTCA
GATGA

Synonyms

Publications