jgi.p|Nanoce1779_2|564972, mRNA_3205 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564972
Unique Name	mRNA_3205
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1440
Alignment location	scaffold_7:912605..914183 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	565058
Track	FilteredModels2
ProteinId	564972

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:912605..914183 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564972	gene_3205	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564972	mRNA_3205-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3205	CDS_3205	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:912605..914183-
coding sequence from alignment at scaffold_7:912605..914183-

mRNA sequence

>mRNA_3205 ID=mRNA_3205|Name=jgi.p|Nanoce1779_2|564972|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
ATGGCGGGGCTCGATGGCGTGGACCGCCGGGTCTTTGACCCCGACAAGAA
GGGTTCCGTGCGCATTTTGGACGACCCAGGCGCAGCGGCGAGACGGCTCG
TCTGCTCGCGCATTACGGCATTTACAGGAGAGCATGAGTTCCTCAGCACC
CTCAGCAAGTCCCGCGTGGTGCTGCCAGGGGAGGGCGTGATCGAAGGCGA
CAAATTCGTGGTATATCCAACCGTGGAGCACGCGCTACAAGCAGCCAAGA
GCACCGATTCCGAGTACCGACTTGCTATTCTGGTGTGTAAAGACCCGTTG
GAGGCGAAGCGGCGGGGGGCCAAGGCACCGGGATGGGACAAGGAGGGATG
GAAGACGAAGTCCCTTGCCATAATGGAAGCCTTGCTCCGCGATAAATTCC
GACGTCACAAAGGGCTACGGGCTCAACTTCTCGCCACGGGCACCAAGAAT
TTGATTTATGAAAACGAGCACAACGATCAATTTTGGGGAATCTGCAAAGG
TGGAGGAAAAGGAGGGGGCGGCAGCGGCGGGGGGCATAATCACCTCGGGT
TACTCCTGGAGAAAGTCCGGGCCGACGAAAAAGAAGGTCTCCTAGCCATC
CTTTTCTGGGCAAAGCAAATCTTCCGCGCCCTGCCCGACGCCAAGGTCCA
CGTCGACATGAGTGTCATGAGGGATGGGGCCCCTCTACCCGAAGCCGACC
TCAGCTTCGACAGGAAGTCCATCATCACCTTTGGCAAGCTGGCGGAGAAT
GACGTCCCTGTCGCTCACCCCAGCACCAGTCGTTTCCATGCGCTCATCGT
CGCTTCTGAGCCTTATGGCCCGTTGCTCATTGACCTTGAGGCAGCCAACG
GCACCTTTCTTGATGAGAGACGACTCGAGCCCTTTAAGGGGGCCTTGCTC
ACCCCTACCTCCATCGCCGCCCTCGGAACCTCCACCCGTCGGTACACCTT
TACGTTCGACCTCTTTGCGGACGCAAAACGTTCCTTAGCCATGTACGAGA
TATTGGATAACCCTCTCAAGCTCGCGGCGGCACGACCCGAACTCGGCGTT
TTCGTCAACAACCTCCCCAAAGACGTTACGGAGGAAATGGTGCTGAATTT
TTTCTCCGAATGTGGGACTGTGCTATCTGTGTCGTTGCCAAGGCATAAAA
CGACCAAGGAGCCACGCGGATTCGCGATTGTGTTGTTCGGAACGGAGGCG
GCGGTAGTTGCAGCACTAAAATTGGACAGGGACCCGATGGGGGGGTCGGA
GGTGAGAGTGAAGAGACGGAAGAAGGAGGAGGGAGGAGCAGGAGGAGCAG
GAAGAGGGAAGCTGGTGCGGATAGAACTCGAGCTACGAACAAGCATATGC
ACCACAGGGACGAGGAGTATCAAGGGAGGGAGAGGGGGAGGCAAAGGGAG
GAAGGTGAGCCTTATCGTCGCTCACGAAGTAGAAGCTTGA

protein sequence of jgi.p|Nanoce1779_2|564972

>mRNA_3205-protein ID=mRNA_3205-protein|Name=jgi.p|Nanoce1779_2|564972|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MAGLDGVDRRVFDPDKKGSVRILDDPGAAARRLVCSRITAFTGEHEFLST
LSKSRVVLPGEGVIEGDKFVVYPTVEHALQAAKSTDSEYRLAILVCKDPL
EAKRRGAKAPGWDKEGWKTKSLAIMEALLRDKFRRHKGLRAQLLATGTKN
LIYENEHNDQFWGICKGGGKGGGGSGGGHNHLGLLLEKVRADEKEGLLAI
LFWAKQIFRALPDAKVHVDMSVMRDGAPLPEADLSFDRKSIITFGKLAEN
DVPVAHPSTSRFHALIVASEPYGPLLIDLEAANGTFLDERRLEPFKGALL
TPTSIAALGTSTRRYTFTFDLFADAKRSLAMYEILDNPLKLAAARPELGV
FVNNLPKDVTEEMVLNFFSECGTVLSVSLPRHKTTKEPRGFAIVLFGTEA
AVVAALKLDRDPMGGSEVRVKRRKKEEGGAGGAGRGKLVRIELELRTSIC
TTGTRSIKGGRGGGKGRKVSLIVAHEVEA*

mRNA from alignment at scaffold_7:912605..914183-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3205 ID=mRNA_3205|Name=jgi.p|Nanoce1779_2|564972|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp|location=Sequence derived from alignment at scaffold_7:912605..914183- (Nannochloropsis oceanica)
ATGGCGGGGCTCGATGGCGTGGACCGCCGGGTCTTTGACCCCGACAAGAA
GGGTTCCGTGCGCATTTTGGACGACCCAGGCGCAGCGGCGAGACGGCTCG
TCTGCTCGCGCATTACGGCATTTACAGGAGAGCATGAGTTCCTCAGCACC
CTCAGCAAGTCCCGCGTGGTGCTGCCAGGGGAGGGCGTGATCGAAGGCGA
CAAATTCGTGGTATATCCAACCGTGGAGCACGCGCTACAAGCAGCCAAGA
GCACCGATTCCGAGTACCGACTTGCTATTCTGGTGTGTAAAGACCCGTTG
GAGGCGAAGCGGCGGGGGGCCAAGGCACCGGGATGGGACAAGGAGGGATG
GAAGACGAAGTCCCTTGCCATAATGGAAGCCTTGCTCCGCGATAAATTCC
GACGTCACAAAGGGCTACGGGCTCAACTTCTCGCCACGGGCACCAAGAAT
TTGATTTATGAAAACGAGCACAACGATCAATTTTGGGGAATCTGCAAAGG
TGGAGGAAAAGGAGGGGGCGGCAGCGGCGGGGGGCATAATCACCTCGGGT
TACTCCTGGAGAAAGTCCGGGCCGACGAAAAAGAAGGTCTCCTAGCCATC
CTTTTCTGGGCAAAGCAAATCTTCCGCGCCCTGCCCGACGCCAAGGTCCA
CGTCGACATGAGTGTCATGAGGGATGGGGCCCCTCTACCCGAAGCCGACC
TCAGCTTCGACAGGAAGTCCATCATCACCTTTGGCAAGCTGGCGGAGAAT
GACGTCCCTGTCGCTCACCCCAGCACCAGTCGTTTCCATGCGCTCATCGT
CGCTTCTGAGCCTTATGGCCCGTTGCTCATTGACCTTGAGGCAGCCAACG
GCACCTTTCTTGATGAGAGACGACTCGAGCCCTTTAAGGGGGCCTTGCTC
ACCCCTACCTCCATCGCCGCCCTCGGAACCTCCACCCGTCGGTACACCTT
TACGTTCGACCTCTTTGCGGACGCAAAACGTTCCTTAGCCATGTACGAGA
TATTGGATAACCCTCTCAAGCTCGCGGCGGCACGACCCGAACTCGGCGTT
TTCGTCAACAACCTCCCCAAAGACGTTACGGAGGAAATGGTGCTGAATTT
TTTCTCCGAATGTGGGACTGTGCTATCTGTGTCGTTGCCAAGGCATAAAA
CGACCAAGGAGCCACGCGGATTCGCGATTGTGTTGTTCGGAACGGAGGCG
GCGGTAGTTGCAGCACTAAAATTGGACAGGGACCCGATGGGGGGGTCGGA
GGTGAGAGTGAAGAGACGGAAGAAGGAGGAGGGAGGAGCAGGAGGAGCAG
GAAGAGGGAAGGTGAGTGAAGACGGAGGGAAGCGGAAGGAGGAGCAGAGG
AGGAATGTGGATCATTATTGCCCTTCTTCGTCGTCTTCGTCTTTGGGTGG
TGGTGGGGAGTTGAAGACGACGGCTGCAGCTGCTGTTGCTGCTGGCACAG
CTGGTGCGGATAGAACTCGAGCTACGAACAAGCATATGCACCACAGGGAC
GAGGAGTATCAAGGGAGGGAGAGGGGGAGGCAAAGGGAGGAAGGTGAGCC
TTATCGTCGCTCACGAAGTAGAAGCTTGA

Coding sequence (CDS) from alignment at scaffold_7:912605..914183-

>mRNA_3205 ID=mRNA_3205|Name=jgi.p|Nanoce1779_2|564972|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_7:912605..914183- (Nannochloropsis oceanica)
CTGGTGCGGATAGAACTCGAGCTACGAACAAGCATATGCACCACAGGGAC
GAGGAGTATCAAGGGAGGGAGAGGGGGAGGCAAAGGGAGGAAGGTGAGCC
TTATCGTCGCTCACGAAGTAGAAGCTTGAATGGCGGGGCTCGATGGCGTG
GACCGCCGGGTCTTTGACCCCGACAAGAAGGGTTCCGTGCGCATTTTGGA
CGACCCAGGCGCAGCGGCGAGACGGCTCGTCTGCTCGCGCATTACGGCAT
TTACAGGAGAGCATGAGTTCCTCAGCACCCTCAGCAAGTCCCGCGTGGTG
CTGCCAGGGGAGGGCGTGATCGAAGGCGACAAATTCGTGGTATATCCAAC
CGTGGAGCACGCGCTACAAGCAGCCAAGAGCACCGATTCCGAGTACCGAC
TTGCTATTCTGGTGTGTAAAGACCCGTTGGAGGCGAAGCGGCGGGGGGCC
AAGGCACCGGGATGGGACAAGGAGGGATGGAAGACGAAGTCCCTTGCCAT
AATGGAAGCCTTGCTCCGCGATAAATTCCGACGTCACAAAGGGCTACGGG
CTCAACTTCTCGCCACGGGCACCAAGAATTTGATTTATGAAAACGAGCAC
AACGATCAATTTTGGGGAATCTGCAAAGGTGGAGGAAAAGGAGGGGGCGG
CAGCGGCGGGGGGCATAATCACCTCGGGTTACTCCTGGAGAAAGTCCGGG
CCGACGAAAAAGAAGGTCTCCTAGCCATCCTTTTCTGGGCAAAGCAAATC
TTCCGCGCCCTGCCCGACGCCAAGGTCCACGTCGACATGAGTGTCATGAG
GGATGGGGCCCCTCTACCCGAAGCCGACCTCAGCTTCGACAGGAAGTCCA
TCATCACCTTTGGCAAGCTGGCGGAGAATGACGTCCCTGTCGCTCACCCC
AGCACCAGTCGTTTCCATGCGCTCATCGTCGCTTCTGAGCCTTATGGCCC
GTTGCTCATTGACCTTGAGGCAGCCAACGGCACCTTTCTTGATGAGAGAC
GACTCGAGCCCTTTAAGGGGGCCTTGCTCACCCCTACCTCCATCGCCGCC
CTCGGAACCTCCACCCGTCGGTACACCTTTACGTTCGACCTCTTTGCGGA
CGCAAAACGTTCCTTAGCCATGTACGAGATATTGGATAACCCTCTCAAGC
TCGCGGCGGCACGACCCGAACTCGGCGTTTTCGTCAACAACCTCCCCAAA
GACGTTACGGAGGAAATGGTGCTGAATTTTTTCTCCGAATGTGGGACTGT
GCTATCTGTGTCGTTGCCAAGGCATAAAACGACCAAGGAGCCACGCGGAT
TCGCGATTGTGTTGTTCGGAACGGAGGCGGCGGTAGTTGCAGCACTAAAA
TTGGACAGGGACCCGATGGGGGGGTCGGAGGTGAGAGTGAAGAGACGGAA
GAAGGAGGAGGGAGGAGCAGGAGGAGCAGGAAGAGGGAAGCTGGTGCGGA
TAGAACTCGAGCTACGAACAAGCATATGCACCACAGGGACGAGGAGTATC
AAGGGAGGGAGAGGGGGAGGCAAAGGGAGGAAGGTGAGCCTTATCGTCGC
TCACGAAGTAGAAGCTTGAATGGCGGGGCTCGATGGCGTGGACCGCCGGG
TCTTTGACCCCGACAAGAAGGGTTCCGTGCGCATTTTGGACGACCCAGGC
GCAGCGGCGAGACGGCTCGTCTGCTCGCGCATTACGGCATTTACAGGAGA
GCATGAGTTCCTCAGCACCCTCAGCAAGTCCCGCGTGGTGCTGCCAGGGG
AGGGCGTGATCGAAGGCGACAAATTCGTGGTATATCCAACCGTGGAGCAC
GCGCTACAAGCAGCCAAGAGCACCGATTCCGAGTACCGACTTGCTATTCT
GGTGTGTAAAGACCCGTTGGAGGCGAAGCGGCGGGGGGCCAAGGCACCGG
GATGGGACAAGGAGGGATGGAAGACGAAGTCCCTTGCCATAATGGAAGCC
TTGCTCCGCGATAAATTCCGACGTCACAAAGGGCTACGGGCTCAACTTCT
CGCCACGGGCACCAAGAATTTGATTTATGAAAACGAGCACAACGATCAAT
TTTGGGGAATCTGCAAAGGTGGAGGAAAAGGAGGGGGCGGCAGCGGCGGG
GGGCATAATCACCTCGGGTTACTCCTGGAGAAAGTCCGGGCCGACGAAAA
AGAAGGTCTCCTAGCCATCCTTTTCTGGGCAAAGCAAATCTTCCGCGCCC
TGCCCGACGCCAAGGTCCACGTCGACATGAGTGTCATGAGGGATGGGGCC
CCTCTACCCGAAGCCGACCTCAGCTTCGACAGGAAGTCCATCATCACCTT
TGGCAAGCTGGCGGAGAATGACGTCCCTGTCGCTCACCCCAGCACCAGTC
GTTTCCATGCGCTCATCGTCGCTTCTGAGCCTTATGGCCCGTTGCTCATT
GACCTTGAGGCAGCCAACGGCACCTTTCTTGATGAGAGACGACTCGAGCC
CTTTAAGGGGGCCTTGCTCACCCCTACCTCCATCGCCGCCCTCGGAACCT
CCACCCGTCGGTACACCTTTACGTTCGACCTCTTTGCGGACGCAAAACGT
TCCTTAGCCATGTACGAGATATTGGATAACCCTCTCAAGCTCGCGGCGGC
ACGACCCGAACTCGGCGTTTTCGTCAACAACCTCCCCAAAGACGTTACGG
AGGAAATGGTGCTGAATTTTTTCTCCGAATGTGGGACTGTGCTATCTGTG
TCGTTGCCAAGGCATAAAACGACCAAGGAGCCACGCGGATTCGCGATTGT
GTTGTTCGGAACGGAGGCGGCGGTAGTTGCAGCACTAAAATTGGACAGGG
ACCCGATGGGGGGGTCGGAGGTGAGAGTGAAGAGACGGAAGAAGGAGGAG
GGAGGAGCAGGAGGAGCAGGAAGAGGGAAG

Synonyms

Publications