jgi.p|Nanoce1779_2|584910, mRNA_3203 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584910
Unique Name	mRNA_3203
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1422
Alignment location	scaffold_7:909736..911157 +

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Properties


Property Name	Value
TranscriptId	584996
Track	FilteredModels2
ProteinId	584910

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:909736..911157 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584910	gene_3203	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584910	mRNA_3203-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3203	CDS_3203	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:909736..911157+
coding sequence from alignment at scaffold_7:909736..911157+

mRNA sequence

>mRNA_3203 ID=mRNA_3203|Name=jgi.p|Nanoce1779_2|584910|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
CCTCTCCCTTCACCACCGGAGACGCCTTTGGAGGCAACCCCACACCACTA
CCTCTCCCTCCCTCTCTCCCTCCCCCGCCTCCGAGGTTAAACTTGCTGTT
CACCCATTTCACATGCCCCGAGCCCCCGTCCAAGGCAAAGATCTTCGTCG
TCTTCTCCCCTAACAATAAACCGCACCCTTCCTCATTTCCACCCCCACCA
AAAGGATAGGAAGATGAATCCGATGCCGGACACGACATGACCGGATTATC
CAACAAATCAAGCACATTCGAGGCCAAGATCTCCTGAGTTCCGTCATCCC
TCACACAGACAATGCGGCCTTCCAATGTAGGCATCACAAAATACTTGCTC
TCCGTCGCCCGCCCGGCATTTACCCGATCTCCCCCTCCTCCTCCTCCCCC
CCCTGCCTTCTTATTGCTGGCCTCCAGGAAGAAGGAGGAGGAATAAAGGG
GAGGGCCGGAATAGAAGAGACCTTTGGCTTGCCCTGTCCACGCATCCACC
GTGTGGACCCCCCCATCAATGGTACTAATTACGATGCTCAAGTCTCTCTC
TCCTGCTGCTGCCACTGCTGTCCCTGTTGCACCCATCCCTACTCCACCGT
TTTCTGGAAACGATCGAAATGGTGGTGTTTGCTGGCGGACGGTTGTGAGG
TGCTGAGAATGCTCTTGCAGCTGCTGCAGCTGCTGCTGCTGCTGCTGCTT
CTGAGATGGGAGGGGAGCCAGAGAATTGCCATGCACACGGAGGACAGGAA
AGAGGGTGGCGAACAGAGAAGACACGACAAGGACCAAGGCAGAAAATAGT
AGTTTACTTTTCATCATGGCGCTGCTGCGGGTGCTGGCCAGGGAGCTCCA
TCTTCTCTTGGGATGCCTCCTCCTTTTGCGATTGTCACCCTCTGATTCGC
TGCTCTCCTTCCGTCCCAAATTTGATGGTGCGGGGGATGGTGATGGTGAT
GATGGATACAACGGTGGTAGCACTGGAGGCGACGATGGAGGATGCATCAG
TGGGCCGGATGAAGTCAGGGAAGGCACGGAGGCTGCCCGCCGCCGACGCC
TCCCAACTGCCTCGTCGTCGAGCGCCTTATGCTGTTGCATGGCGCTCGAT
TTTCAAAGACCGTCGCTATCTCTTCCAATTTCTAGGTACTGCGGACGTCT
GTCCTTCCTGCCACTCCTCCGCATCCCTTTTCTTCCCAGCGTTACGCCTG
TGTGTGGCAGGAGTTATAGTCGTGAGAGCTGTTCAGAAGGATGGCCCTCT
TCTGAGGGAAATCTCGGCCTCTGTCTTCCAACCGTGCTCCCATAAAGCCC
CCCATCCTGCCTCCAGCCTCTCCCTTCATACCTCGGTGTCGTTCAGTCGT
GATGTTATGACCAAGTCCTCGTGAGTAAGTGGGACTAGGAGTTCATGGTC
TGCTGGCTTGCTTGACCCTGTT

protein sequence of jgi.p|Nanoce1779_2|584910

>mRNA_3203-protein ID=mRNA_3203-protein|Name=jgi.p|Nanoce1779_2|584910|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MGGEPENCHAHGGQERGWRTEKTRQGPRQKIVVYFSSWRCCGCWPGSSIF
SWDASSFCDCHPLIRCSPSVPNLMVRGMVMVMMDTTVVALEATMEDASVG
RMKSGKARRLPAADASQLPRRRAPYAVAWRSIFKDRRYLFQFLGTADVCP
SCHSSASLFFPALRLCVAGVIVVRAVQKDGPLLREISASVFQPCSHKAPH
PASSLSLHTSVSFSRDVMTKSS*

mRNA from alignment at scaffold_7:909736..911157+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3203 ID=mRNA_3203|Name=jgi.p|Nanoce1779_2|584910|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp|location=Sequence derived from alignment at scaffold_7:909736..911157+ (Nannochloropsis oceanica)
CCTCTCCCTTCACCACCGGAGACGCCTTTGGAGGCAACCCCACACCACTA
CCTCTCCCTCCCTCTCTCCCTCCCCCGCCTCCGAGGTTAAACTTGCTGTT
CACCCATTTCACATGCCCCGAGCCCCCGTCCAAGGCAAAGATCTTCGTCG
TCTTCTCCCCTAACAATAAACCGCACCCTTCCTCATTTCCACCCCCACCA
AAAGGATAGGAAGATGAATCCGATGCCGGACACGACATGACCGGATTATC
CAACAAATCAAGCACATTCGAGGCCAAGATCTCCTGAGTTCCGTCATCCC
TCACACAGACAATGCGGCCTTCCAATGTAGGCATCACAAAATACTTGCTC
TCCGTCGCCCGCCCGGCATTTACCCGATCTCCCCCTCCTCCTCCTCCCCC
CCCTGCCTTCTTATTGCTGGCCTCCAGGAAGAAGGAGGAGGAATAAAGGG
GAGGGCCGGAATAGAAGAGACCTTTGGCTTGCCCTGTCCACGCATCCACC
GTGTGGACCCCCCCATCAATGGTACTAATTACGATGCTCAAGTCTCTCTC
TCCTGCTGCTGCCACTGCTGTCCCTGTTGCACCCATCCCTACTCCACCGT
TTTCTGGAAACGATCGAAATGGTGGTGTTTGCTGGCGGACGGTTGTGAGG
TGCTGAGAATGCTCTTGCAGCTGCTGCAGCTGCTGCTGCTGCTGCTGCTT
CTGAGATGGGAGGGGAGCCAGAGAATTGCCATGCACACGGAGGACAGGAA
AGAGGGTGGCGAACAGAGAAGACACGACAAGGACCAAGGCAGAAAATAGT
AGTTTACTTTTCATCATGGCGCTGCTGCGGGTGCTGGCCAGGGAGCTCCA
TCTTCTCTTGGGATGCCTCCTCCTTTTGCGATTGTCACCCTCTGATTCGC
TGCTCTCCTTCCGTCCCAAATTTGATGGTGCGGGGGATGGTGATGGTGAT
GATGGATACAACGGTGGTAGCACTGGAGGCGACGATGGAGGATGCATCAG
TGGGCCGGATGAAGTCAGGGAAGGCACGGAGGCTGCCCGCCGCCGACGCC
TCCCAACTGCCTCGTCGTCGAGCGCCTTATGCTGTTGCATGGCGCTCGAT
TTTCAAAGACCGTCGCTATCTCTTCCAATTTCTAGGTACTGCGGACGTCT
GTCCTTCCTGCCACTCCTCCGCATCCCTTTTCTTCCCAGCGTTACGCCTG
TGTGTGGCAGGAGTTATAGTCGTGAGAGCTGTTCAGAAGGATGGCCCTCT
TCTGAGGGAAATCTCGGCCTCTGTCTTCCAACCGTGCTCCCATAAAGCCC
CCCATCCTGCCTCCAGCCTCTCCCTTCATACCTCGGTGTCGTTCAGTCGT
GATGTTATGACCAAGTCCTCGTGAGTAAGTGGGACTAGGAGTTCATGGTC
TGCTGGCTTGCTTGACCCTGTT

Coding sequence (CDS) from alignment at scaffold_7:909736..911157+

>mRNA_3203 ID=mRNA_3203|Name=jgi.p|Nanoce1779_2|584910|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_7:909736..911157+ (Nannochloropsis oceanica)
ATGGGAGGGGAGCCAGAGAATTGCCATGCACACGGAGGACAGGAAAGAGG
GTGGCGAACAGAGAAGACACGACAAGGACCAAGGCAGAAAATAGTAGTTT
ACTTTTCATCATGGCGCTGCTGCGGGTGCTGGCCAGGGAGCTCCATCTTC
TCTTGGGATGCCTCCTCCTTTTGCGATTGTCACCCTCTGATTCGCTGCTC
TCCTTCCGTCCCAAATTTGATGGTGCGGGGGATGGTGATGGTGATGATGG
ATACAACGGTGGTAGCACTGGAGGCGACGATGGAGGATGCATCAGTGGGC
CGGATGAAGTCAGGGAAGGCACGGAGGCTGCCCGCCGCCGACGCCTCCCA
ACTGCCTCGTCGTCGAGCGCCTTATGCTGTTGCATGGCGCTCGATTTTCA
AAGACCGTCGCTATCTCTTCCAATTTCTAGGTACTGCGGACGTCTGTCCT
TCCTGCCACTCCTCCGCATCCCTTTTCTTCCCAGCGTTACGCCTGTGTGT
GGCAGGAGTTATAGTCGTGAGAGCTGTTCAGAAGGATGGCCCTCTTCTGA
GGGAAATCTCGGCCTCTGTCTTCCAACCGTGCTCCCATAAAGCCCCCCAT
CCTGCCTCCAGCCTCTCCCTTCATACCTCGGTGTCGTTCAGTCGTGATGT
TATGACCAAGTCCTCGTGA

Synonyms

Publications