jgi.p|Nanoce1779_2|526795, mRNA_3202 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526795
Unique NamemRNA_3202
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length891
Alignment locationscaffold_7:905586..907604 -

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Properties
Property NameValue
TranscriptId526881
TrackFilteredModels2
ProteinId526795
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:905586..907604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526795gene_3202Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526795mRNA_3202-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3202CDS_3202Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3202 ID=mRNA_3202|Name=jgi.p|Nanoce1779_2|526795|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGACCACTGGCCATCAGCACAAGCCCCAGCAGCAGCAGAAACCGCAGCA
GCAGCAAAATCCAACCGAAGTTCTTTCCGACGCGCAGGGGAATCCCATCC
TCTTCCTCTCCAACCAGCGTTACCGCAACGAGTTCGAGGAAGCCCATACC
TTGGGAAAGGGCGGCTTTGGGACTGTGTTTAAATCCACAAACAAATTAGA
CGGACACGAATATGCCATCAAGAAGATTCGGCTGTCGTCTGCAGCGAGAT
GGAGTCAGCAGCTGGAGAAGGTGTTGAGGGAGGTCAAGATTTTGGCCTTG
CTGGACCACCCAAATATCATCAGATATTATCAAGCATGGCTAGAGAGGCT
GACGCCCGAGGATTTGCTTGCTGCTGCTGCTGCTGCTGCGGCAGCTGCGG
CGGCAGCAGCAATGCAGTACTGCTCCAATCGAACGTTGAAAGACTTCTTG
GACTTGCCCACTCGTCTCGTGGCAGTCGACAAGGCCGAGGCGCTTCAACT
TGCCCTGCAGATCGCGAGGGGCGTTACGTATGTGCATGCCCGAGGGCTGA
TTCACCGAGATTTGAAGCCGACAAATTGTTTTTTGGTCGGGGATAAGATC
AAATTGGGGGATTTTGGCTTGTCAAGGCATGTCGGAGCTGCGGGGTCTGG
AGGAGGAGGGGAGGGAGGAGGGGGCAGAGGAGGGGCAGGGAAGGTGCCGG
CTTCTCCAAGGGGAAGGAGGGGGGGAATGGAAGGAGGGGGAGAGGACAAC
ACGGTGGGTGTCGGGACCCCGGTGTATGGGAGTCCAGAGCAGCTGAGTGG
GGGGTACTATGACGAGAAAACAGACGTGTTTTCCCTAGGCGTAATGCTGT
TTGAATTGTTCCACCCGGGTTTTACCACGGGCATGGAGCGA
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protein sequence of jgi.p|Nanoce1779_2|526795

>mRNA_3202-protein ID=mRNA_3202-protein|Name=jgi.p|Nanoce1779_2|526795|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTTGHQHKPQQQQKPQQQQNPTEVLSDAQGNPILFLSNQRYRNEFEEAHT
LGKGGFGTVFKSTNKLDGHEYAIKKIRLSSAARWSQQLEKVLREVKILAL
LDHPNIIRYYQAWLERLTPEDLLAAAAAAAAAAAAAAMQYCSNRTLKDFL
DLPTRLVAVDKAEALQLALQIARGVTYVHARGLIHRDLKPTNCFLVGDKI
KLGDFGLSRHVGAAGSGGGGEGGGGRGGAGKVPASPRGRRGGMEGGGEDN
TVGVGTPVYGSPEQLSGGYYDEKTDVFSLGVMLFELFHPGFTTGMER
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mRNA from alignment at scaffold_7:905586..907604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3202 ID=mRNA_3202|Name=jgi.p|Nanoce1779_2|526795|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp|location=Sequence derived from alignment at scaffold_7:905586..907604- (Nannochloropsis oceanica)
ATGACCACTGGCCATCAGCACAAGCCCCAGCAGCAGCAGAAACCGCAGCA
GCAGCAAAATCCAACCGAAGTTCTTTCCGACGCGCAGGGGAATCCCATCC
TCTTCCTCTCCAACCAGCGTTACCGCAACGAGTTCGAGGAAGCCCATACC
TTGGGAAAGGGCGGCTTTGGGACTGTGTTTAAATCCACAAACAAATTAGA
CGGACACGAATATGCCATCAAGAAGATTCGGCTGTCGTCTGCAGCGAGAT
GGAGTCAGCAGCTGGAGAAGGTGTTGAGGGAGGTCAAGATTTTGGCCTTG
CTGGACCACCCAAATATCATCAGATATTATCAAGCATGGCTAGAGAGGCT
GACGCCCGAGGATTTGCTTGCTGCTGCTGCTGCTGCTGCGGCAGCTGGTG
GTCATTGTGGTCGGTCCGGGTCCGCTTCAGTGACGGTTGCGAGTGTGACA
ACGGCAGGAAGGGAGGGGGATGAGGAGGTGGACCACGAAGAGGAAGAAAG
CGACGGTATGAGAAGTCGGGGAGAGGGTGATTCATTGGTGCGGTGGCGAA
CAAACAGCAGCAGCAGTAGTGTTCGACCCCTTTCGCATACGTTGATATCG
CAGGGAGGGAGGGAGGGAGAAAGAGGTCTGCGGCGGGTAGAGAGTGGTCT
GCGGCGGGTAGAGAGTGGGGGTTCCTTGGTTAGTGGAGGAGGTGGAAAAG
GAGGAGGAGGGGAAGACGCGCTGAGTGAGATTGCCCAGAGCGGTATTCGT
CGACATTTGCTCTCGTTGCCACAGCATGCGGTCCTTGCTTCTCCAGCGGG
AGAAGAGGCTTTGCGAGAGGAAGCAGGTGAGGAGGGGGAAATCAGTAGCA
GTAGTAGCAGCAGCGGCGGCAGCAGCAGTGGCAATAGGAGTAGACAAATA
GGGCCTGCCGGTTCAAGGGGACTTGAGTCGCCGAGAGTCCTGCCAAAGTT
GCGACTGGCGCAGTCTACTGCAGGAGGAGGCGATTCTGGGGAACATAGTC
ATATTTCTCAGTGGTCTGAAGACGAGGAGGACGAGGACGAGGACGAGGAC
GAGGACGAGGACGAGGAGGACTACAGTGAAGGGGAGGACGAACACGTTCA
CAGCAGCAGCAATGGCTTGGTTATTTGGTCGAGGCCGTCAGAGCTCTCGG
TGGCCTCGGGGGAGGAAGGATCTGCCCCGCCCTCGACCGCCTCCTCGCTT
GCTAGCACTCCTAGATGTAGGAGGAGGAGGAAGACCTGTAGGAGTAGCGT
GAGCAGCAGCACCAGCAGTAGCAGGGCCGGCTCTGACTATTCGGGTGTGA
GGTCGTTTTTGGCTCCCTTTCCTTCTGACCAAGAGCAGCAGCTGCAGCCG
CATCAATCGGAAGCAGCCACGCGAGGTGGTGGTGCAGGAGGAGGAGGAGG
AGGAGGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAAAGAGAAGGCGTCGGCCACCACCGCCGCCGCGCGCGCGAGATC
CGTGAACCAGTCGTGTTTGATCTGTGTTTGTACATCCAGATGCAGTACTG
CTCCAATCGAACGTTGAAAGACTTCTTGGACTTGCCCACTCGTCTCGTGG
CAGTCGACAAGGCCGAGGCGCTTCAACTTGCCCTGCAGATCGCGAGGGGC
GTTACGTATGTGCATGCCCGAGGGCTGATTCACCGAGATTTGAAGCCGAC
AAATTGTTTTTTGGTCGGGGATAAGATCAAATTGGGGGATTTTGGCTTGT
CAAGGCATGTCGGAGCTGCGGGGTCTGGAGGAGGAGGGGAGGGAGGAGGG
GGCAGAGGAGGGGCAGGGAAGGTGCCGGCTTCTCCAAGGGGAAGGAGGGG
GGGAATGGAAGGAGGGGGAGAGGACAACACGGTGGGTGTCGGGACCCCGG
TGTATGGGAGTCCAGAGCAGCTGAGTGGGGGGTACTATGACGAGAAAACA
GACGTGTTTTCCCTAGGCGTAATGCTGTTTGAATTGTTCCACCCGGGTTT
TACCACGGGCATGGAGCGA
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Coding sequence (CDS) from alignment at scaffold_7:905586..907604-

>mRNA_3202 ID=mRNA_3202|Name=jgi.p|Nanoce1779_2|526795|organism=Nannochloropsis oceanica|type=CDS|length=2673bp|location=Sequence derived from alignment at scaffold_7:905586..907604- (Nannochloropsis oceanica)
ATGCAGTACTGCTCCAATCGAACGTTGAAAGACTTCTTGGACTTGCCCAC
TCGTCTCGTGGCAGTCGACAAGGCCGAGGCGCTTCAACTTGCCCTGCAGA
TCGCGAGGGGCGTTACGTATGTGCATGCCCGAGGGCTGATTCACCGAGAT
TTGAAGCCGACAAATTGTTTTTTGGTCGGGGATAAGATCAAATTGGGGGA
TTTTGGCTTGTCAAGGCATGTCGGAGCTGCGGGGTCTGGAGGAGGAGGGG
AGGGAGGAGGGGGCAGAGGAGGGGCAGGGAAGGTGCCGGCTTCTCCAAGG
GGAAGGAGGGGGGGAATGGAAGGAGGGGGAGAGGACAACACGGTGGGTGT
CGGGACCCCGGTGTATGGGAGTCCAGAGCAGCTGAGTGGGGGGTACTATG
ACGAGAAAACAGACGTGTTTTCCCTAGGCGTAATGCTGTTTGAATTGTTC
CACCCGGGTTTTACCACGGGCATGGAGCGACGGCGGCAGCAGCAATGACC
ACTGGCCATCAGCACAAGCCCCAGCAGCAGCAGAAACCGCAGCAGCAGCA
AAATCCAACCGAAGTTCTTTCCGACGCGCAGGGGAATCCCATCCTCTTCC
TCTCCAACCAGCGTTACCGCAACGAGTTCGAGGAAGCCCATACCTTGGGA
AAGGGCGGCTTTGGGACTGTGTTTAAATCCACAAACAAATTAGACGGACA
CGAATATGCCATCAAGAAGATTCGGCTGTCGTCTGCAGCGAGATGGAGTC
AGCAGCTGGAGAAGGTGTTGAGGGAGGTCAAGATTTTGGCCTTGCTGGAC
CACCCAAATATCATCAGATATTATCAAGCATGGCTAGAGAGGCTGACGCC
CGAGGATTTGCTTGCTGCTGCTGCTGCTGCTGCGGCAGCTGATGCAGTAC
TGCTCCAATCGAACGTTGAAAGACTTCTTGGACTTGCCCACTCGTCTCGT
GGCAGTCGACAAGGCCGAGGCGCTTCAACTTGCCCTGCAGATCGCGAGGG
GCGTTACGTATGTGCATGCCCGAGGGCTGATTCACCGAGATTTGAAGCCG
ACAAATTGTTTTTTGGTCGGGGATAAGATCAAATTGGGGGATTTTGGCTT
GTCAAGGCATGTCGGAGCTGCGGGGTCTGGAGGAGGAGGGGAGGGAGGAG
GGGGCAGAGGAGGGGCAGGGAAGGTGCCGGCTTCTCCAAGGGGAAGGAGG
GGGGGAATGGAAGGAGGGGGAGAGGACAACACGGTGGGTGTCGGGACCCC
GGTGTATGGGAGTCCAGAGCAGCTGAGTGGGGGGTACTATGACGAGAAAA
CAGACGTGTTTTCCCTAGGCGTAATGCTGTTTGAATTGTTCCACCCGGGT
TTTACCACGGGCATGGAGCGACGGCGGCAGCAGCAATGACCACTGGCCAT
CAGCACAAGCCCCAGCAGCAGCAGAAACCGCAGCAGCAGCAAAATCCAAC
CGAAGTTCTTTCCGACGCGCAGGGGAATCCCATCCTCTTCCTCTCCAACC
AGCGTTACCGCAACGAGTTCGAGGAAGCCCATACCTTGGGAAAGGGCGGC
TTTGGGACTGTGTTTAAATCCACAAACAAATTAGACGGACACGAATATGC
CATCAAGAAGATTCGGCTGTCGTCTGCAGCGAGATGGAGTCAGCAGCTGG
AGAAGGTGTTGAGGGAGGTCAAGATTTTGGCCTTGCTGGACCACCCAAAT
ATCATCAGATATTATCAAGCATGGCTAGAGAGGCTGACGCCCGAGGATTT
GCTTGCTGCTGCTGCTGCTGCTGCGGCAGCTGATGCAGTACTGCTCCAAT
CGAACGTTGAAAGACTTCTTGGACTTGCCCACTCGTCTCGTGGCAGTCGA
CAAGGCCGAGGCGCTTCAACTTGCCCTGCAGATCGCGAGGGGCGTTACGT
ATGTGCATGCCCGAGGGCTGATTCACCGAGATTTGAAGCCGACAAATTGT
TTTTTGGTCGGGGATAAGATCAAATTGGGGGATTTTGGCTTGTCAAGGCA
TGTCGGAGCTGCGGGGTCTGGAGGAGGAGGGGAGGGAGGAGGGGGCAGAG
GAGGGGCAGGGAAGGTGCCGGCTTCTCCAAGGGGAAGGAGGGGGGGAATG
GAAGGAGGGGGAGAGGACAACACGGTGGGTGTCGGGACCCCGGTGTATGG
GAGTCCAGAGCAGCTGAGTGGGGGGTACTATGACGAGAAAACAGACGTGT
TTTCCCTAGGCGTAATGCTGTTTGAATTGTTCCACCCGGGTTTTACCACG
GGCATGGAGCGACGGCGGCAGCAGCAATGACCACTGGCCATCAGCACAAG
CCCCAGCAGCAGCAGAAACCGCAGCAGCAGCAAAATCCAACCGAAGTTCT
TTCCGACGCGCAGGGGAATCCCATCCTCTTCCTCTCCAACCAGCGTTACC
GCAACGAGTTCGAGGAAGCCCATACCTTGGGAAAGGGCGGCTTTGGGACT
GTGTTTAAATCCACAAACAAATTAGACGGACACGAATATGCCATCAAGAA
GATTCGGCTGTCGTCTGCAGCGAGATGGAGTCAGCAGCTGGAGAAGGTGT
TGAGGGAGGTCAAGATTTTGGCCTTGCTGGACCACCCAAATATCATCAGA
TATTATCAAGCATGGCTAGAGAGGCTGACGCCCGAGGATTTGCTTGCTGC
TGCTGCTGCTGCTGCGGCAGCTG
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Synonyms
Publications